Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35239 * 126.68992 * 2 1 4 4 C 1.42048 * 103.95659 * 179.97438 * 3 2 1 5 5 N 1.39355 * 126.90340 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99825 * 359.97438 * 5 4 3 7 7 O 1.21356 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.49380 * 120.00113 * 180.02562 * 6 5 4 9 9 O 1.21352 * 119.99872 * 359.97438 * 8 6 5 10 10 N 1.34774 * 119.99899 * 180.02562 * 8 6 5 11 11 C 1.47423 * 125.64884 * 180.02562 * 10 8 6 12 12 C 1.54912 * 104.83178 * 204.08923 * 11 10 8 13 13 H 1.08996 * 111.00652 * 81.06144 * 12 11 10 14 14 C 1.53002 * 111.00282 * 204.91565 * 12 11 10 15 15 C 1.55156 * 101.57949 * 322.98729 * 12 11 10 16 16 H 1.09000 * 110.72067 * 277.13756 * 15 12 11 17 17 N 1.46502 * 110.71824 * 154.04715 * 15 12 11 18 18 C 1.36933 * 119.99833 * 154.99778 * 17 15 12 19 19 H 1.08002 * 120.00500 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99973 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00242 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47216 * 120.00430 * 22 20 18 25 25 H 1.48505 * 109.47311 * 240.00458 * 22 20 18 26 26 C 1.47020 * 125.65067 * 359.68477 * 10 8 6 27 27 N 1.30756 * 106.20054 * 359.97438 * 4 3 2 28 28 O 1.20912 * 111.46753 * 359.72132 * 27 4 3 29 29 H 1.09002 * 109.47152 * 90.00180 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00281 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00262 * 1 2 3 32 32 H 1.08005 * 128.02000 * 359.95174 * 3 2 1 33 33 H 0.97003 * 120.00613 * 180.02562 * 5 4 3 34 34 H 1.08996 * 110.36403 * 322.92293 * 11 10 8 35 35 H 1.09002 * 110.36888 * 85.24771 * 11 10 8 36 36 H 1.09005 * 109.47465 * 58.54216 * 14 12 11 37 37 H 1.08995 * 109.47603 * 178.54333 * 14 12 11 38 38 H 1.09003 * 109.47117 * 298.54591 * 14 12 11 39 39 H 0.96993 * 120.00204 * 334.99908 * 17 15 12 40 40 H 0.97007 * 120.00352 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.88243 * 298.39925 * 26 10 8 42 42 H 1.09005 * 109.88459 * 59.56137 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5355 0.0006 5 7 4.8276 1.2399 0.0014 6 6 4.8190 2.5877 0.0010 7 8 3.7642 3.1877 0.0006 8 6 6.1079 3.3429 0.0012 9 8 7.1627 2.7428 0.0022 10 7 6.0992 4.6906 0.0014 11 6 7.2917 5.5574 0.0011 12 6 6.8088 6.8963 0.6127 13 1 6.7832 6.8420 1.7010 14 6 7.6841 8.0605 0.1442 15 6 5.3761 7.0072 0.0276 16 1 5.4020 7.4227 -0.9798 17 7 4.5218 7.8180 0.8988 18 6 3.4331 8.4662 0.3793 19 1 3.2045 8.3800 -0.6727 20 6 2.6234 9.2341 1.2048 21 7 2.9022 9.3396 2.4868 22 14 1.1379 10.1177 0.4964 23 1 1.0441 9.8394 -0.9594 24 1 -0.0935 9.6359 1.1723 25 1 1.2817 11.5798 0.7130 26 6 4.8991 5.5398 -0.0051 27 7 3.4764 -0.7635 0.0015 28 8 2.3082 -1.0752 0.0069 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 2.0302 2.1263 -0.0007 33 1 5.6708 0.7603 0.0014 34 1 8.0781 5.1210 0.6168 35 1 7.6480 5.7122 -1.0173 36 1 7.6583 8.1196 -0.9439 37 1 7.3075 8.9916 0.5677 38 1 8.7102 7.8997 0.4750 39 1 4.7273 7.8958 1.8435 40 1 2.3366 9.8765 3.0637 41 1 4.3200 5.3561 -0.9101 42 1 4.2916 5.3299 0.8752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939730293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = 1.443543 kcal Electronic energy + Delta-G solvation = -27122.328977 eV Core-core repulsion = 23106.049547 eV Total energy + Delta-G solvation = -4016.279429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.05128 -42.21251 -40.42836 -39.08159 -37.10174 -35.88896 -34.64143 -33.97813 -33.19677 -32.49933 -29.29294 -28.76332 -28.38599 -26.31159 -25.74891 -24.36455 -22.98386 -22.11281 -21.47356 -21.11990 -19.13971 -18.88098 -18.85950 -18.68682 -18.03404 -17.63111 -17.41893 -16.83692 -16.46741 -15.94647 -15.44683 -15.36500 -14.95353 -14.73671 -14.57359 -14.43508 -14.20053 -14.00063 -13.84559 -13.61767 -13.38633 -13.09816 -13.01161 -12.93083 -12.85409 -12.77524 -12.33779 -12.17072 -12.08609 -12.02993 -11.69188 -11.44371 -11.11463 -10.83012 -10.51060 -10.15107 -9.90381 -9.05532 -7.93715 -5.23325 -0.20327 0.44887 0.69907 1.12148 1.50131 1.51333 1.60428 1.92612 1.94841 2.14476 2.57428 2.85686 3.22694 3.37636 3.57271 3.70267 3.80048 3.84489 3.96567 4.21896 4.27714 4.32916 4.42270 4.57099 4.63203 4.63888 4.73404 4.80454 4.85728 4.90783 4.95869 5.04412 5.14543 5.15715 5.23236 5.34915 5.48469 5.56123 5.58181 6.03428 6.24951 6.28075 6.60005 7.13093 7.34990 8.05733 8.29430 9.29330 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003688 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.052421 B = 7589.439003 C = 9975.748551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.002 3.998 3 C -0.254 4.254 4 C 0.231 3.769 5 N -0.601 5.601 6 C 0.519 3.481 7 O -0.493 6.493 8 C 0.528 3.472 9 O -0.538 6.538 10 N -0.575 5.575 11 C 0.115 3.885 12 C -0.105 4.105 13 H 0.074 0.926 14 C -0.126 4.126 15 C 0.169 3.831 16 H 0.076 0.924 17 N -0.719 5.719 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.068 4.068 21 N -0.967 5.967 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.297 1.297 25 H -0.295 1.295 26 C 0.091 3.909 27 N -0.401 5.401 28 O 0.100 5.900 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.183 0.817 33 H 0.435 0.565 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -16.144 -6.903 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.277 4.277 4 C -0.018 4.018 5 N -0.255 5.255 6 C 0.300 3.700 7 O -0.365 6.365 8 C 0.310 3.690 9 O -0.416 6.416 10 N -0.307 5.307 11 C -0.006 4.006 12 C -0.125 4.125 13 H 0.092 0.908 14 C -0.184 4.184 15 C 0.058 3.942 16 H 0.094 0.906 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.797 3.203 23 H -0.189 1.189 24 H -0.224 1.224 25 H -0.222 1.222 26 C -0.034 4.034 27 N -0.117 5.117 28 O 0.039 5.961 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.200 0.800 33 H 0.275 0.725 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.801 -16.983 -7.038 18.596 hybrid contribution -0.733 1.098 0.435 1.390 sum 2.068 -15.885 -6.603 17.327 Atomic orbital electron populations 1.20652 0.80155 1.06346 1.05962 1.25132 0.98039 0.84271 0.98755 1.22798 0.89362 1.02746 1.12826 1.20662 0.88469 0.89322 1.03311 1.41949 1.07417 1.05419 1.70680 1.20289 0.90460 0.81968 0.77300 1.90792 1.32614 1.68075 1.44970 1.19107 0.88152 0.82270 0.79507 1.90759 1.32007 1.67843 1.51027 1.48350 1.11216 1.03643 1.67514 1.22629 0.86670 0.88299 1.03016 1.22599 0.95058 0.94555 1.00335 0.90784 1.21557 0.99021 0.96058 1.01757 1.21529 0.89541 0.87901 0.95229 0.90580 1.42454 1.29693 1.55550 1.08064 1.19660 1.02309 1.21217 0.93999 0.90228 1.25480 1.02332 1.02356 0.95923 1.69811 1.41459 1.45690 1.04743 0.85171 0.79374 0.77700 0.78096 1.18893 1.22447 1.22181 1.23195 0.86090 0.92292 1.01844 1.74054 0.98591 1.12755 1.26257 1.84765 1.10116 1.32817 1.68384 0.87222 0.87858 0.87546 0.80006 0.72464 0.88975 0.88322 0.91358 0.93462 0.90446 0.79209 0.94069 0.91369 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.45 71.24 0.74 0.04 16 2 C 0.00 0.04 7.48 24.99 0.19 0.22 16 3 C -0.25 -6.50 9.79 22.52 0.22 -6.28 16 4 C 0.23 6.35 8.17 134.15 1.10 7.44 16 5 N -0.60 -15.98 5.41 -310.80 -1.68 -17.66 16 6 C 0.52 15.50 7.82 87.25 0.68 16.18 16 7 O -0.49 -16.69 11.40 -3.27 -0.04 -16.72 16 8 C 0.53 15.85 7.91 87.25 0.69 16.54 16 9 O -0.54 -16.74 16.73 -3.25 -0.05 -16.79 16 10 N -0.58 -17.13 3.33 -813.45 -2.70 -19.83 16 11 C 0.11 2.83 6.37 86.86 0.55 3.39 16 12 C -0.11 -2.97 3.27 -9.40 -0.03 -3.00 16 13 H 0.07 2.29 8.01 -2.39 -0.02 2.27 16 14 C -0.13 -3.02 9.29 71.98 0.67 -2.35 16 15 C 0.17 5.98 3.07 46.18 0.14 6.12 16 16 H 0.08 2.63 7.96 -2.39 -0.02 2.61 16 17 N -0.72 -33.48 5.17 -317.32 -1.64 -35.12 16 18 C -0.24 -12.50 9.96 84.03 0.84 -11.66 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 21 N -0.97 -57.03 13.06 21.65 0.28 -56.75 16 22 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 C 0.09 3.16 5.26 86.73 0.46 3.62 16 27 N -0.40 -10.68 12.10 -56.34 -0.68 -11.36 16 28 O 0.10 2.28 11.19 71.24 0.80 3.07 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.18 5.07 6.22 -2.91 -0.02 5.06 16 33 H 0.44 10.09 8.29 -92.71 -0.77 9.32 16 34 H 0.09 2.12 8.04 -2.39 -0.02 2.10 16 35 H 0.10 2.04 8.04 -2.39 -0.02 2.02 16 36 H 0.07 1.46 8.11 -2.38 -0.02 1.44 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.38 19.08 7.76 -92.71 -0.72 18.36 16 40 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 41 H 0.07 2.38 7.71 -2.39 -0.02 2.36 16 42 H 0.06 2.33 7.46 -2.38 -0.02 2.31 16 Total: -1.00 -66.66 358.02 2.61 -64.05 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.41 Total: 33.66 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 6.71 Total: 26.99 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -6.42 Total: -140.73 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: 0.71 Total: -30.44 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.66 2.61 -64.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939730293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.490 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds