Wall clock time and date at job start Fri Apr 10 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30648 * 128.64048 * 2 1 4 4 O 1.20839 * 109.61768 * 180.24167 * 3 2 1 5 5 N 1.20907 * 115.90442 * 359.74104 * 4 3 2 6 6 C 1.31599 * 109.18187 * 359.97438 * 5 4 3 7 7 C 1.48274 * 128.70859 * 179.97438 * 6 5 4 8 8 O 1.21508 * 119.99712 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00349 * 0.02562 * 7 6 5 10 10 C 1.47480 * 125.65823 * 359.97438 * 9 7 6 11 11 C 1.55026 * 104.89777 * 204.01079 * 10 9 7 12 12 C 1.54813 * 101.62744 * 323.73243 * 11 10 9 13 13 C 1.47181 * 125.66381 * 180.02562 * 9 7 6 14 14 C 1.52514 * 110.21728 * 152.89824 * 12 11 10 15 15 N 1.47303 * 108.40334 * 72.18005 * 14 12 11 16 16 C 1.36940 * 121.06394 * 229.36495 * 15 14 12 17 17 H 1.08001 * 119.99817 * 154.20085 * 16 15 14 18 18 C 1.38807 * 119.99961 * 334.19463 * 16 15 14 19 19 N 1.31622 * 119.99801 * 159.56080 * 18 16 15 20 20 Si 1.86798 * 120.00075 * 339.56474 * 18 16 15 21 21 H 1.48498 * 109.47036 * 90.82877 * 20 18 16 22 22 H 1.48498 * 109.47239 * 210.82657 * 20 18 16 23 23 H 1.48500 * 109.47215 * 330.82495 * 20 18 16 24 24 C 1.47169 * 117.87245 * 49.38589 * 15 14 12 25 25 C 1.53284 * 108.54589 * 308.86773 * 24 15 14 26 26 O 1.42073 * 110.30558 * 275.96501 * 12 11 10 27 27 H 1.09002 * 109.47090 * 270.16089 * 1 2 3 28 28 H 1.09000 * 109.47398 * 30.15588 * 1 2 3 29 29 H 1.08998 * 109.47285 * 150.16068 * 1 2 3 30 30 H 1.08996 * 110.35715 * 322.86543 * 10 9 7 31 31 H 1.08999 * 110.35147 * 85.15891 * 10 9 7 32 32 H 1.08999 * 111.01330 * 81.68272 * 11 10 9 33 33 H 1.09001 * 111.01614 * 205.52561 * 11 10 9 34 34 H 1.09000 * 109.90904 * 297.87334 * 13 9 7 35 35 H 1.09005 * 109.91114 * 58.94935 * 13 9 7 36 36 H 1.09001 * 109.67715 * 191.90912 * 14 12 11 37 37 H 1.08998 * 109.67831 * 312.41263 * 14 12 11 38 38 H 0.97003 * 119.99708 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.62457 * 68.58411 * 24 15 14 40 40 H 1.08999 * 109.62504 * 188.96421 * 24 15 14 41 41 H 1.08995 * 109.51086 * 172.82865 * 25 24 15 42 42 H 1.08999 * 109.51098 * 292.97999 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0048 5 7 3.6101 -0.5738 -0.0035 6 6 2.4280 -1.1520 0.0036 7 6 2.1034 -2.5987 0.0072 8 8 0.9436 -2.9611 0.0135 9 7 3.0947 -3.5118 0.0036 10 6 4.5389 -3.2129 -0.0046 11 6 5.2033 -4.4733 -0.6155 12 6 4.3159 -5.6039 -0.0401 13 6 2.9157 -4.9727 0.0060 14 6 4.3288 -6.8105 -0.9728 15 7 5.6456 -7.4628 -0.8711 16 6 6.3622 -7.7866 -1.9923 17 1 7.4382 -7.8647 -1.9415 18 6 5.7056 -8.0146 -3.1938 19 7 6.3637 -7.9269 -4.3303 20 14 3.8881 -8.4458 -3.1978 21 1 3.0844 -7.2014 -3.3009 22 1 3.5904 -9.3248 -4.3571 23 1 3.5446 -9.1541 -1.9386 24 6 6.1663 -7.7557 0.4738 25 6 6.0877 -6.4775 1.3162 26 8 4.7546 -5.9599 1.2635 27 1 -0.3633 0.0029 1.0277 28 1 -0.3634 0.8886 -0.5162 29 1 -0.3634 -0.8914 -0.5113 30 1 4.7418 -2.3394 -0.6240 31 1 4.8980 -3.0499 1.0116 32 1 5.1506 -4.4542 -1.7041 33 1 6.2348 -4.5740 -0.2779 34 1 2.3993 -5.2819 0.9147 35 1 2.3418 -5.2779 -0.8691 36 1 3.5482 -7.5114 -0.6770 37 1 4.1589 -6.4833 -1.9985 38 1 5.9047 -8.0859 -5.1700 39 1 5.5642 -8.5372 0.9373 40 1 7.2024 -8.0864 0.4013 41 1 6.3490 -6.7058 2.3494 42 1 6.7818 -5.7367 0.9194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972699726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:13 Heat of formation + Delta-G solvation = 86.170421 kcal Electronic energy + Delta-G solvation = -28416.477076 eV Core-core repulsion = 24403.871680 eV Total energy + Delta-G solvation = -4012.605396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -47.12477 -40.58038 -39.10184 -36.53000 -35.43419 -34.93190 -34.75825 -31.88131 -31.67095 -29.91235 -29.75940 -28.08519 -26.72827 -25.09331 -23.88059 -23.30237 -22.47131 -21.45511 -20.20052 -19.35757 -19.29215 -18.03930 -17.43849 -17.32336 -16.37326 -15.96217 -15.62522 -15.25980 -14.83473 -14.49737 -14.26234 -14.16054 -13.90065 -13.84587 -13.71570 -13.28197 -13.08394 -12.65571 -12.63236 -12.40936 -12.26195 -12.06185 -11.91348 -11.58828 -11.42254 -11.27912 -11.19543 -10.80104 -10.61809 -10.51539 -10.47647 -10.29840 -9.83763 -9.61206 -9.48694 -8.86521 -8.66496 -7.13260 -6.07611 -3.44845 0.52528 1.03835 2.30267 2.73228 3.10049 3.18363 3.20196 3.40354 3.41299 3.56086 3.87428 4.31044 4.39564 4.44985 4.58339 4.63029 4.80790 4.99521 5.04683 5.11918 5.25246 5.26764 5.31864 5.46358 5.55513 5.61507 5.66214 5.67558 5.73092 5.81881 5.97727 6.00417 6.07841 6.18963 6.28830 6.35454 6.38820 6.61195 7.15199 7.54837 7.68117 7.73856 8.17910 8.19174 8.74579 9.56057 9.91597 11.07778 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.003781 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.363026 B = 7404.425902 C = 7791.947321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 N -0.359 5.359 4 O 0.340 5.660 5 N -0.316 5.316 6 C -0.035 4.035 7 C 0.617 3.383 8 O -0.518 6.518 9 N -0.593 5.593 10 C 0.097 3.903 11 C -0.144 4.144 12 C 0.095 3.905 13 C 0.124 3.876 14 C 0.112 3.888 15 N -0.604 5.604 16 C -0.262 4.262 17 H 0.090 0.910 18 C 0.027 3.973 19 N -0.904 5.904 20 Si 0.876 3.124 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.044 3.956 26 O -0.372 6.372 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.264 0.736 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 13.645 10.610 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 N -0.085 5.085 4 O 0.115 5.885 5 N -0.036 5.036 6 C -0.201 4.201 7 C 0.401 3.599 8 O -0.393 6.393 9 N -0.326 5.326 10 C -0.025 4.025 11 C -0.182 4.182 12 C 0.053 3.947 13 C 0.002 3.998 14 C -0.015 4.015 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.107 0.893 18 C -0.173 4.173 19 N -0.546 5.546 20 Si 0.706 3.294 21 H -0.215 1.215 22 H -0.228 1.228 23 H -0.194 1.194 24 C -0.014 4.014 25 C -0.034 4.034 26 O -0.291 6.291 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.775 14.149 10.573 18.918 hybrid contribution -1.350 -0.879 -0.349 1.649 sum -8.125 13.270 10.224 18.618 Atomic orbital electron populations 1.20347 0.82893 1.05301 1.04733 1.26217 1.00352 0.85090 0.98788 1.75059 0.91204 1.24022 1.18226 1.85075 1.23265 1.16859 1.63267 1.75481 1.22893 0.92587 1.12662 1.25975 0.88080 0.98150 1.07865 1.15983 0.84543 0.81112 0.78235 1.90819 1.18296 1.79348 1.50802 1.48350 1.07161 1.06840 1.70266 1.22676 0.78451 0.99500 1.01886 1.23279 1.00473 0.92381 1.02084 1.22387 0.92084 0.95058 0.85200 1.21917 0.96753 0.77415 1.03712 1.21815 0.89317 0.91910 0.98424 1.44374 1.18439 1.67978 1.02092 1.18887 0.91468 1.43150 0.85438 0.89251 1.25227 0.97459 0.99301 0.95291 1.69817 1.36647 1.51031 0.97114 0.87104 0.86860 0.78311 0.77152 1.21473 1.22767 1.19439 1.21635 0.99337 0.94417 0.85986 1.23169 0.83462 0.96445 1.00297 1.87693 1.31515 1.83305 1.26622 0.88825 0.89417 0.87924 0.89459 0.90624 0.89085 0.88458 0.89538 0.89298 0.94548 0.89670 0.92575 0.94987 0.90776 0.89249 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.22 36.01 0.37 -0.23 16 2 C 0.06 0.68 7.79 -79.33 -0.62 0.06 16 3 N -0.36 -4.03 12.22 33.76 0.41 -3.62 16 4 O 0.34 3.87 11.65 27.26 0.32 4.18 16 5 N -0.32 -3.89 9.71 33.49 0.33 -3.56 16 6 C -0.04 -0.45 7.33 -80.07 -0.59 -1.04 16 7 C 0.62 9.13 7.88 -12.13 -0.10 9.04 16 8 O -0.52 -8.44 16.29 5.36 0.09 -8.36 16 9 N -0.59 -8.87 3.33 -171.64 -0.57 -9.44 16 10 C 0.10 1.34 6.23 -2.44 -0.02 1.32 16 11 C -0.14 -2.28 5.93 -24.71 -0.15 -2.43 16 12 C 0.09 1.62 0.84 -89.57 -0.08 1.55 16 13 C 0.12 1.96 6.23 -3.33 -0.02 1.94 16 14 C 0.11 2.31 2.92 -3.85 -0.01 2.29 16 15 N -0.60 -13.43 2.74 -172.17 -0.47 -13.90 16 16 C -0.26 -6.87 10.10 -15.06 -0.15 -7.02 16 17 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 18 C 0.03 0.74 5.25 -17.43 -0.09 0.65 16 19 N -0.90 -26.58 13.97 55.49 0.78 -25.81 16 20 Si 0.88 21.49 24.27 -169.99 -4.13 17.37 16 21 H -0.29 -6.74 6.53 56.52 0.37 -6.38 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 23 H -0.27 -6.54 6.61 56.52 0.37 -6.17 16 24 C 0.11 2.04 6.72 -3.53 -0.02 2.02 16 25 C 0.04 0.67 6.77 37.30 0.25 0.92 16 26 O -0.37 -6.25 10.23 -35.23 -0.36 -6.61 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.89 7.32 -51.93 -0.38 0.51 16 30 H 0.09 1.15 6.32 -51.93 -0.33 0.82 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.58 7.86 -51.93 -0.41 1.17 16 33 H 0.10 1.52 6.00 -51.93 -0.31 1.21 16 34 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 35 H 0.09 1.43 7.79 -51.93 -0.40 1.02 16 36 H 0.04 0.77 6.84 -51.93 -0.36 0.42 16 37 H 0.09 1.91 4.46 -51.93 -0.23 1.68 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.30 7.96 -51.93 -0.41 0.88 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.82 6.14 -51.93 -0.32 0.50 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.23 334.70 -5.09 -35.32 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.30 Total: 0.32 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.22 Total: 9.06 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.47 Total: -56.34 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.04 Total: -10.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.13 Total: 17.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.23 -5.09 -35.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972699726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.489 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds