Wall clock time and date at job start Fri Apr 10 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35246 * 126.68972 * 2 1 4 4 C 1.42049 * 103.94938 * 180.02562 * 3 2 1 5 5 N 1.39367 * 126.89655 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99702 * 0.02562 * 5 4 3 7 7 O 1.21358 * 119.99667 * 359.97438 * 6 5 4 8 8 C 1.49375 * 119.99648 * 180.02562 * 6 5 4 9 9 O 1.21354 * 120.00071 * 353.32427 * 8 6 5 10 10 N 1.34777 * 119.99702 * 173.33023 * 8 6 5 11 11 C 1.46922 * 120.63098 * 173.05490 * 10 8 6 12 12 C 1.53193 * 108.89956 * 233.56122 * 11 10 8 13 13 C 1.53077 * 109.28943 * 305.57808 * 12 11 10 14 14 N 1.46503 * 109.44027 * 181.23227 * 13 12 11 15 15 C 1.36936 * 119.99674 * 84.79631 * 14 13 12 16 16 H 1.08002 * 120.00314 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99804 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47178 * 89.99808 * 19 17 15 21 21 H 1.48498 * 109.47131 * 209.99962 * 19 17 15 22 22 H 1.48510 * 109.46970 * 330.00089 * 19 17 15 23 23 C 1.53039 * 109.65787 * 61.15336 * 13 12 11 24 24 C 1.46928 * 120.63091 * 353.08096 * 10 8 6 25 25 N 1.30747 * 106.20719 * 0.26370 * 4 3 2 26 26 O 1.20913 * 111.46714 * 359.53358 * 25 4 3 27 27 H 1.09000 * 109.46906 * 89.99624 * 1 2 3 28 28 H 1.08993 * 109.47258 * 210.00000 * 1 2 3 29 29 H 1.08998 * 109.47002 * 330.00003 * 1 2 3 30 30 H 1.07997 * 128.02385 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00071 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.58921 * 353.41781 * 11 10 8 33 33 H 1.09000 * 109.58497 * 113.70096 * 11 10 8 34 34 H 1.09001 * 109.49700 * 65.38388 * 12 11 10 35 35 H 1.08995 * 109.49832 * 185.48870 * 12 11 10 36 36 H 1.08995 * 109.35181 * 301.12639 * 13 12 11 37 37 H 0.96996 * 119.99965 * 264.80122 * 14 13 12 38 38 H 0.96991 * 120.00085 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.49677 * 178.74295 * 23 13 12 40 40 H 1.09004 * 109.52790 * 58.66282 * 23 13 12 41 41 H 1.09000 * 109.58615 * 246.15492 * 24 10 8 42 42 H 1.08990 * 109.58506 * 6.44067 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5354 -0.0006 5 7 4.8277 1.2399 -0.0004 6 6 4.8191 2.5877 0.0011 7 8 3.7642 3.1877 0.0017 8 6 6.1080 3.3427 0.0008 9 8 7.1592 2.7486 0.1214 10 7 6.1032 4.6838 -0.1334 11 6 7.3446 5.4554 0.0158 12 6 7.1219 6.5572 1.0566 13 6 5.9034 7.3926 0.6558 14 7 5.7050 8.4656 1.6333 15 6 6.3941 9.6422 1.5077 16 1 7.0842 9.7791 0.6882 17 6 6.2065 10.6588 2.4342 18 7 5.3667 10.4915 3.4337 19 14 7.1461 12.2642 2.2625 20 1 6.3589 13.2122 1.4338 21 1 7.3718 12.8519 3.6074 22 1 8.4545 12.0046 1.6097 23 6 4.6593 6.5023 0.6165 24 6 4.8565 5.4020 -0.4310 25 7 3.4764 -0.7635 -0.0067 26 8 2.3082 -1.0752 -0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0304 2.1263 -0.0004 31 1 5.6708 0.7602 -0.0005 32 1 8.1469 4.7963 0.3475 33 1 7.6126 5.9047 -0.9404 34 1 6.9457 6.1054 2.0327 35 1 8.0038 7.1959 1.1045 36 1 6.0711 7.8260 -0.3301 37 1 5.0856 8.3425 2.3695 38 1 5.2353 11.2019 4.0809 39 1 3.7895 7.1041 0.3527 40 1 4.5045 6.0490 1.5956 41 1 4.9202 5.8491 -1.4230 42 1 4.0175 4.7072 -0.3966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997292784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:32 Heat of formation + Delta-G solvation = 34.790908 kcal Electronic energy + Delta-G solvation = -26953.832752 eV Core-core repulsion = 22938.999373 eV Total energy + Delta-G solvation = -4014.833379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.23163 -41.37429 -39.22863 -37.70778 -36.22748 -34.51988 -33.97322 -32.37410 -32.07324 -30.90166 -29.41707 -28.18955 -26.42189 -24.66290 -23.80147 -22.85654 -22.50639 -21.33261 -20.80651 -19.41745 -18.05500 -17.92237 -17.87390 -17.17574 -17.06453 -16.52578 -16.07796 -15.62135 -15.00821 -14.75310 -14.33137 -13.97685 -13.92696 -13.80785 -13.66152 -13.62323 -13.50482 -13.12510 -12.88048 -12.55733 -12.21522 -12.13055 -11.69166 -11.59728 -11.34986 -10.94667 -10.90154 -10.85123 -10.47155 -10.30472 -10.05965 -9.77343 -9.75639 -9.33323 -9.20314 -8.93517 -8.75041 -7.00686 -5.80274 -3.09598 0.72156 1.22473 1.68149 2.02385 2.75292 2.92295 3.06761 3.40817 3.46094 3.47775 3.81382 4.02378 4.47412 4.55215 4.64856 4.86317 4.99982 5.06793 5.16530 5.26758 5.28378 5.37326 5.38808 5.49657 5.51935 5.67616 5.73244 5.86616 5.88679 6.08543 6.19610 6.22235 6.36126 6.40374 6.49034 6.52402 6.83205 6.99312 7.12740 7.29613 7.65821 7.66460 7.93123 8.37976 9.49271 10.06444 10.41154 11.42271 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002484 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.522590 B =11268.060108 C =12137.475653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 C -0.226 4.226 4 C 0.244 3.756 5 N -0.606 5.606 6 C 0.524 3.476 7 O -0.478 6.478 8 C 0.512 3.488 9 O -0.525 6.525 10 N -0.562 5.562 11 C 0.109 3.891 12 C -0.150 4.150 13 C 0.176 3.824 14 N -0.724 5.724 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.133 4.133 24 C 0.052 3.948 25 N -0.384 5.384 26 O 0.101 5.899 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.193 0.807 31 H 0.431 0.569 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -21.381 -9.448 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 C -0.248 4.248 4 C -0.005 4.005 5 N -0.258 5.258 6 C 0.307 3.693 7 O -0.351 6.351 8 C 0.293 3.707 9 O -0.402 6.402 10 N -0.294 5.294 11 C -0.013 4.013 12 C -0.191 4.191 13 C 0.065 3.935 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.172 4.172 24 C -0.069 4.069 25 N -0.098 5.098 26 O 0.039 5.961 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.210 0.790 31 H 0.270 0.730 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.229 -22.048 -9.429 25.046 hybrid contribution 0.622 1.559 0.317 1.708 sum -6.607 -20.490 -9.112 23.377 Atomic orbital electron populations 1.20378 0.83493 1.04954 1.04345 1.24481 0.96593 0.85652 1.01753 1.22758 0.88993 1.02372 1.10726 1.20464 0.88079 0.89024 1.02956 1.42153 1.07224 1.05899 1.70532 1.20619 0.90937 0.81563 0.76178 1.90339 1.33034 1.65511 1.46209 1.19325 0.87890 0.83590 0.79929 1.90780 1.31731 1.67996 1.49695 1.48086 1.11833 1.04282 1.65235 1.21951 0.84997 0.93780 1.00568 1.22707 1.02439 0.96280 0.97698 1.20231 0.91122 0.88229 0.93878 1.42428 1.51403 1.12497 1.30067 1.19233 1.18161 0.91462 1.08303 0.91159 1.24755 0.99922 0.98611 0.97634 1.69657 1.39084 1.33453 1.15840 0.86203 0.79348 0.83925 0.76779 1.21706 1.21791 1.20761 1.22124 0.99949 0.96345 0.98814 1.23263 0.87477 0.97434 0.98745 1.74086 0.97683 1.12957 1.25092 1.84809 1.10347 1.32431 1.68556 0.89158 0.89659 0.88641 0.78956 0.72973 0.89363 0.90843 0.92142 0.90237 0.93381 0.78245 0.93475 0.90312 0.91832 0.91372 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.10 16 2 C -0.02 -0.17 7.48 -35.37 -0.26 -0.43 16 3 C -0.23 -2.26 9.79 -39.19 -0.38 -2.64 16 4 C 0.24 2.80 8.17 -154.92 -1.27 1.53 16 5 N -0.61 -6.68 5.41 -11.86 -0.06 -6.74 16 6 C 0.52 6.33 7.74 -11.62 -0.09 6.24 16 7 O -0.48 -5.96 10.38 5.49 0.06 -5.90 16 8 C 0.51 6.91 7.74 -11.62 -0.09 6.82 16 9 O -0.52 -7.89 15.94 5.49 0.09 -7.81 16 10 N -0.56 -7.67 2.97 -173.31 -0.52 -8.18 16 11 C 0.11 1.53 6.41 -3.71 -0.02 1.50 16 12 C -0.15 -2.56 5.67 -26.59 -0.15 -2.71 16 13 C 0.18 3.30 2.73 -67.87 -0.19 3.11 16 14 N -0.72 -17.57 5.12 -53.37 -0.27 -17.85 16 15 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.13 -2.11 5.55 -26.61 -0.15 -2.25 16 24 C 0.05 0.68 6.27 -3.71 -0.02 0.65 16 25 N -0.38 -4.49 12.10 31.18 0.38 -4.11 16 26 O 0.10 1.01 11.19 17.07 0.19 1.20 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.19 1.90 6.22 -52.49 -0.33 1.57 16 31 H 0.43 4.25 8.31 -40.82 -0.34 3.91 16 32 H 0.09 1.24 7.05 -51.93 -0.37 0.87 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.15 1.83 3.78 -56.77 -0.21 1.62 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -31.90 351.11 -6.98 -38.88 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.34 Total: 10.49 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.49 Total: 4.80 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 0.25 Total: -64.00 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.34 Total: -12.51 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.90 -6.98 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997292784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.671 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds