Wall clock time and date at job start Fri Apr 10 2020 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35246 * 126.68972 * 2 1 4 4 C 1.42049 * 103.94938 * 180.02562 * 3 2 1 5 5 N 1.39367 * 126.89655 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99702 * 0.02562 * 5 4 3 7 7 O 1.21358 * 119.99667 * 359.97438 * 6 5 4 8 8 C 1.49375 * 119.99648 * 180.02562 * 6 5 4 9 9 O 1.21354 * 120.00071 * 353.32427 * 8 6 5 10 10 N 1.34777 * 119.99702 * 173.33023 * 8 6 5 11 11 C 1.46922 * 120.63098 * 173.05490 * 10 8 6 12 12 C 1.53193 * 108.89956 * 233.56122 * 11 10 8 13 13 C 1.53077 * 109.28943 * 305.57808 * 12 11 10 14 14 N 1.46503 * 109.44027 * 181.23227 * 13 12 11 15 15 C 1.36936 * 119.99674 * 84.79631 * 14 13 12 16 16 H 1.08002 * 120.00314 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99804 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47178 * 89.99808 * 19 17 15 21 21 H 1.48498 * 109.47131 * 209.99962 * 19 17 15 22 22 H 1.48510 * 109.46970 * 330.00089 * 19 17 15 23 23 C 1.53039 * 109.65787 * 61.15336 * 13 12 11 24 24 C 1.46928 * 120.63091 * 353.08096 * 10 8 6 25 25 N 1.30747 * 106.20719 * 0.26370 * 4 3 2 26 26 O 1.20913 * 111.46714 * 359.53358 * 25 4 3 27 27 H 1.09000 * 109.46906 * 89.99624 * 1 2 3 28 28 H 1.08993 * 109.47258 * 210.00000 * 1 2 3 29 29 H 1.08998 * 109.47002 * 330.00003 * 1 2 3 30 30 H 1.07997 * 128.02385 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00071 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.58921 * 353.41781 * 11 10 8 33 33 H 1.09000 * 109.58497 * 113.70096 * 11 10 8 34 34 H 1.09001 * 109.49700 * 65.38388 * 12 11 10 35 35 H 1.08995 * 109.49832 * 185.48870 * 12 11 10 36 36 H 1.08995 * 109.35181 * 301.12639 * 13 12 11 37 37 H 0.96996 * 119.99965 * 264.80122 * 14 13 12 38 38 H 0.96991 * 120.00085 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.49677 * 178.74295 * 23 13 12 40 40 H 1.09004 * 109.52790 * 58.66282 * 23 13 12 41 41 H 1.09000 * 109.58615 * 246.15492 * 24 10 8 42 42 H 1.08990 * 109.58506 * 6.44067 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5354 -0.0006 5 7 4.8277 1.2399 -0.0004 6 6 4.8191 2.5877 0.0011 7 8 3.7642 3.1877 0.0017 8 6 6.1080 3.3427 0.0008 9 8 7.1592 2.7486 0.1214 10 7 6.1032 4.6838 -0.1334 11 6 7.3446 5.4554 0.0158 12 6 7.1219 6.5572 1.0566 13 6 5.9034 7.3926 0.6558 14 7 5.7050 8.4656 1.6333 15 6 6.3941 9.6422 1.5077 16 1 7.0842 9.7791 0.6882 17 6 6.2065 10.6588 2.4342 18 7 5.3667 10.4915 3.4337 19 14 7.1461 12.2642 2.2625 20 1 6.3589 13.2122 1.4338 21 1 7.3718 12.8519 3.6074 22 1 8.4545 12.0046 1.6097 23 6 4.6593 6.5023 0.6165 24 6 4.8565 5.4020 -0.4310 25 7 3.4764 -0.7635 -0.0067 26 8 2.3082 -1.0752 -0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0304 2.1263 -0.0004 31 1 5.6708 0.7602 -0.0005 32 1 8.1469 4.7963 0.3475 33 1 7.6126 5.9047 -0.9404 34 1 6.9457 6.1054 2.0327 35 1 8.0038 7.1959 1.1045 36 1 6.0711 7.8260 -0.3301 37 1 5.0856 8.3425 2.3695 38 1 5.2353 11.2019 4.0809 39 1 3.7895 7.1041 0.3527 40 1 4.5045 6.0490 1.5956 41 1 4.9202 5.8491 -1.4230 42 1 4.0175 4.7072 -0.3966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997292784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:31 Heat of formation + Delta-G solvation = 13.147604 kcal Electronic energy + Delta-G solvation = -26954.771277 eV Core-core repulsion = 22938.999373 eV Total energy + Delta-G solvation = -4015.771903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.01755 -42.39999 -40.31200 -38.96751 -37.23113 -36.08938 -34.59458 -33.85029 -33.18269 -32.13829 -31.14660 -28.69875 -27.61217 -26.20529 -24.84412 -24.22253 -23.75745 -22.21477 -21.94579 -20.70354 -19.29123 -18.85529 -18.76440 -18.66318 -18.06385 -17.50617 -17.14509 -16.77238 -16.53185 -15.98459 -15.58131 -15.39171 -15.24519 -14.99837 -14.71122 -14.48953 -14.39041 -13.97989 -13.91445 -13.63767 -13.26827 -13.13924 -13.05179 -12.84182 -12.77969 -12.49688 -12.28800 -12.20420 -12.12355 -11.94958 -11.70273 -11.54013 -10.90650 -10.47099 -10.37398 -10.10681 -9.91037 -9.00655 -7.93340 -5.21911 -0.23331 0.49392 0.72154 1.16640 1.48260 1.49295 1.57477 1.91840 1.98952 2.20395 2.56802 2.84502 3.25964 3.39857 3.67493 3.78581 3.91266 4.00537 4.09100 4.14185 4.28702 4.36404 4.38430 4.52942 4.56750 4.76560 4.78482 4.83095 4.84309 4.91633 5.01876 5.06488 5.17334 5.21350 5.29095 5.43347 5.51192 5.54685 5.58749 6.02984 6.28634 6.33184 6.59317 7.17671 7.34725 8.10663 8.33367 9.30282 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002484 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.522590 B =11268.060108 C =12137.475653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.001 4.001 3 C -0.247 4.247 4 C 0.227 3.773 5 N -0.599 5.599 6 C 0.530 3.470 7 O -0.482 6.482 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.565 5.565 11 C 0.118 3.882 12 C -0.139 4.139 13 C 0.170 3.830 14 N -0.738 5.738 15 C -0.235 4.235 16 H 0.079 0.921 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.970 3.030 20 H -0.287 1.287 21 H -0.299 1.299 22 H -0.269 1.269 23 C -0.124 4.124 24 C 0.062 3.938 25 N -0.404 5.404 26 O 0.098 5.902 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.194 0.806 31 H 0.435 0.565 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 -22.307 -11.052 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C -0.270 4.270 4 C -0.022 4.022 5 N -0.251 5.251 6 C 0.313 3.687 7 O -0.356 6.356 8 C 0.296 3.704 9 O -0.418 6.418 10 N -0.297 5.297 11 C -0.004 4.004 12 C -0.180 4.180 13 C 0.062 3.938 14 N -0.377 5.377 15 C -0.367 4.367 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.800 3.200 20 H -0.214 1.214 21 H -0.226 1.226 22 H -0.194 1.194 23 C -0.163 4.163 24 C -0.059 4.059 25 N -0.119 5.119 26 O 0.036 5.964 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.211 0.789 31 H 0.275 0.725 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.202 0.798 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.794 -23.024 -11.082 26.715 hybrid contribution 0.740 1.727 0.786 2.037 sum -7.054 -21.297 -10.297 24.685 Atomic orbital electron populations 1.20651 0.80232 1.06365 1.05923 1.25188 0.98073 0.84381 0.98874 1.22854 0.88741 1.02976 1.12402 1.20709 0.88531 0.89323 1.03587 1.42025 1.07576 1.05531 1.69953 1.20245 0.90224 0.81814 0.76452 1.90325 1.32846 1.65670 1.46724 1.19485 0.88175 0.83483 0.79212 1.90775 1.32492 1.68309 1.50265 1.48105 1.11818 1.04473 1.65323 1.21826 0.85332 0.92834 1.00412 1.22476 1.00869 0.96747 0.97915 1.20493 0.93162 0.87629 0.92556 1.42659 1.50937 1.13311 1.30747 1.19633 1.17263 0.92127 1.07674 0.90351 1.25547 1.01530 1.02030 0.97915 1.69815 1.41238 1.34220 1.16966 0.85182 0.78592 0.80048 0.76211 1.21436 1.22627 1.19353 1.21998 0.98405 0.96587 0.99281 1.23257 0.87595 0.96573 0.98465 1.74079 0.98648 1.13156 1.26014 1.84780 1.10147 1.33088 1.68360 0.87280 0.88013 0.87417 0.78909 0.72515 0.89082 0.88741 0.93895 0.91476 0.92996 0.79772 0.94163 0.90332 0.93083 0.89403 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 71.24 0.74 0.40 16 2 C 0.00 -0.02 7.48 25.00 0.19 0.17 16 3 C -0.25 -4.63 9.79 22.52 0.22 -4.41 16 4 C 0.23 5.03 8.17 134.15 1.10 6.12 16 5 N -0.60 -12.76 5.41 -310.82 -1.68 -14.44 16 6 C 0.53 12.19 7.74 87.24 0.68 12.87 16 7 O -0.48 -11.35 10.38 -3.27 -0.03 -11.39 16 8 C 0.51 13.19 7.74 87.25 0.68 13.87 16 9 O -0.54 -15.62 15.94 -3.26 -0.05 -15.67 16 10 N -0.57 -14.44 2.97 -820.59 -2.44 -16.88 16 11 C 0.12 3.11 6.41 86.36 0.55 3.66 16 12 C -0.14 -4.68 5.67 30.68 0.17 -4.50 16 13 C 0.17 6.28 2.73 45.03 0.12 6.40 16 14 N -0.74 -36.12 5.12 -322.75 -1.65 -37.77 16 15 C -0.24 -12.68 9.93 84.04 0.83 -11.85 16 16 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 18 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 19 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.12 -3.81 5.55 30.67 0.17 -3.64 16 24 C 0.06 1.49 6.27 86.36 0.54 2.03 16 25 N -0.40 -9.17 12.10 -56.35 -0.68 -9.85 16 26 O 0.10 1.84 11.19 71.24 0.80 2.63 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.19 3.56 6.22 -2.91 -0.02 3.54 16 31 H 0.44 8.36 8.31 -92.71 -0.77 7.59 16 32 H 0.09 2.41 7.05 -2.39 -0.02 2.39 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 37 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 38 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.16 3.58 3.78 -78.90 -0.30 3.28 16 Total: -1.00 -68.78 351.11 2.33 -66.45 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.69 Total: 31.06 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.46 Total: 17.15 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -6.17 Total: -137.87 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.71 Total: -24.42 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.78 2.33 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997292784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.597 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds