Wall clock time and date at job start Fri Apr 10 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.32494 * 120.37880 * 2 1 4 4 C 1.32289 * 120.90587 * 180.27996 * 3 2 1 5 5 O 1.35455 * 119.16570 * 179.71885 * 4 3 2 6 6 N 1.32317 * 121.66878 * 359.43704 * 4 3 2 7 7 C 1.32752 * 120.65985 * 0.27583 * 6 4 3 8 8 O 1.35513 * 120.47192 * 180.02562 * 7 6 4 9 9 C 1.38192 * 120.37796 * 179.72800 * 2 1 3 10 10 C 1.50695 * 120.76305 * 359.97438 * 9 2 1 11 11 C 1.50708 * 109.46780 * 270.02165 * 10 9 2 12 12 O 1.21272 * 120.00066 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99599 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99688 * 180.02562 * 13 11 10 15 15 H 1.08991 * 112.85324 * 23.80676 * 14 13 11 16 16 C 1.53782 * 113.61413 * 155.00723 * 14 13 11 17 17 C 1.53775 * 87.08366 * 139.97977 * 16 14 13 18 18 H 1.09003 * 113.61862 * 89.11072 * 17 16 14 19 19 N 1.46506 * 113.61343 * 220.01723 * 17 16 14 20 20 C 1.36936 * 119.99779 * 204.99435 * 19 17 16 21 21 H 1.08003 * 120.00429 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99961 * 179.97438 * 20 19 17 23 23 N 1.31625 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47081 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47176 * 120.00378 * 24 22 20 27 27 H 1.48500 * 109.47014 * 239.99996 * 24 22 20 28 28 C 1.53777 * 87.08042 * 334.56361 * 17 16 14 29 29 H 1.08998 * 109.47114 * 270.27124 * 1 2 3 30 30 H 1.08999 * 109.47376 * 30.27182 * 1 2 3 31 31 H 1.09002 * 109.47533 * 150.27455 * 1 2 3 32 32 H 0.96701 * 113.99652 * 269.73154 * 5 4 3 33 33 H 0.96700 * 113.99452 * 90.00934 * 8 7 6 34 34 H 1.09001 * 109.47169 * 30.01572 * 10 9 2 35 35 H 1.08996 * 109.47524 * 150.02088 * 10 9 2 36 36 H 0.97004 * 120.00693 * 0.02562 * 13 11 10 37 37 H 1.09003 * 113.61164 * 254.52979 * 16 14 13 38 38 H 1.08997 * 113.61627 * 25.42893 * 16 14 13 39 39 H 0.96999 * 120.00074 * 25.00130 * 19 17 16 40 40 H 0.96992 * 119.99863 * 179.97438 * 23 22 20 41 41 H 1.08998 * 113.62074 * 270.88339 * 28 17 16 42 42 H 1.09004 * 113.61662 * 139.98435 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1770 1.1430 0.0000 4 6 3.4998 1.1552 -0.0055 5 8 4.1490 2.3440 -0.0111 6 7 4.2048 0.0355 -0.0002 7 6 3.5992 -1.1458 0.0055 8 8 4.3250 -2.2901 0.0114 9 6 2.2058 -1.1922 0.0057 10 6 1.4784 -2.5120 0.0125 11 6 1.2361 -2.9445 1.4357 12 8 1.6161 -2.2493 2.3538 13 7 0.5961 -4.1035 1.6880 14 6 0.3600 -4.5237 3.0714 15 1 0.3551 -3.6891 3.7723 16 6 -0.8420 -5.4695 3.2313 17 6 0.0080 -6.2509 4.2470 18 1 -0.0922 -5.8891 5.2704 19 7 -0.1378 -7.7047 4.1392 20 6 0.1103 -8.5001 5.2258 21 1 0.4132 -8.0558 6.1625 22 6 -0.0283 -9.8775 5.1239 23 7 -0.3979 -10.4190 3.9825 24 14 0.3095 -10.9626 6.6063 25 1 0.7062 -10.1154 7.7597 26 1 -0.9172 -11.7251 6.9515 27 1 1.4075 -11.9098 6.2865 28 6 1.2445 -5.7001 3.5173 29 1 -0.3633 0.0049 1.0276 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 4.3374 2.6851 -0.8962 33 1 4.5352 -2.6179 0.8966 34 1 0.5235 -2.4033 -0.5018 35 1 2.0824 -3.2624 -0.4975 36 1 0.2917 -4.6594 0.9536 37 1 -1.7179 -4.9920 3.6706 38 1 -1.0750 -6.0358 2.3296 39 1 -0.4101 -8.1037 3.2980 40 1 -0.4944 -11.3815 3.9112 41 1 1.5820 -6.3293 2.6938 42 1 2.0533 -5.4087 4.1876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022883411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:55 Heat of formation + Delta-G solvation = -65.403640 kcal Electronic energy + Delta-G solvation = -26477.926659 eV Core-core repulsion = 22458.748518 eV Total energy + Delta-G solvation = -4019.178141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60922 -40.99586 -39.53468 -39.05285 -38.11891 -35.76271 -35.29296 -34.29102 -33.70019 -31.81154 -30.32048 -28.44073 -26.51462 -26.30488 -24.79345 -24.00021 -23.30532 -21.49196 -20.71498 -20.39099 -19.72921 -19.19564 -19.06225 -18.05328 -17.56367 -16.93322 -16.58072 -16.44410 -16.18025 -15.97859 -15.66489 -15.20174 -14.91314 -14.69626 -14.62353 -14.28242 -13.84010 -13.57723 -13.53332 -13.48681 -13.26002 -13.14874 -12.91835 -12.82416 -12.58280 -12.19999 -12.16576 -12.06066 -11.95660 -11.72951 -11.52214 -11.48288 -10.99151 -10.85353 -10.43936 -10.14700 -9.94452 -8.96543 -7.94995 -5.22199 -0.46296 -0.20516 1.48088 1.49023 1.58367 1.62933 1.82501 2.08911 2.33635 2.57441 2.64424 3.19893 3.37263 3.48398 3.67360 3.72641 3.81543 3.88679 3.99885 4.03734 4.19246 4.30723 4.35124 4.42787 4.60190 4.72819 4.76981 4.84246 4.85271 4.93626 4.95320 5.18602 5.19551 5.26640 5.41938 5.52641 5.64904 5.72267 6.28227 6.28473 6.46373 6.63245 6.81049 7.28973 7.34992 8.11380 8.34249 9.28122 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.002178 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.413352 B =12852.988346 C =13223.478431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.214 3.786 3 N -0.546 5.546 4 C 0.509 3.491 5 O -0.465 6.465 6 N -0.579 5.579 7 C 0.385 3.615 8 O -0.475 6.475 9 C -0.194 4.194 10 C -0.086 4.086 11 C 0.518 3.482 12 O -0.585 6.585 13 N -0.700 5.700 14 C 0.139 3.861 15 H 0.104 0.896 16 C -0.138 4.138 17 C 0.145 3.855 18 H 0.074 0.926 19 N -0.723 5.723 20 C -0.242 4.242 21 H 0.074 0.926 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.293 1.293 27 H -0.295 1.295 28 C -0.170 4.170 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.432 0.568 33 H 0.425 0.575 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.417 0.583 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.074 0.926 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 21.703 -14.521 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 N -0.274 5.274 4 C 0.204 3.796 5 O -0.271 6.271 6 N -0.317 5.317 7 C 0.198 3.802 8 O -0.286 6.286 9 C -0.200 4.200 10 C -0.126 4.126 11 C 0.306 3.694 12 O -0.465 6.465 13 N -0.351 5.351 14 C 0.033 3.967 15 H 0.122 0.878 16 C -0.178 4.178 17 C 0.035 3.965 18 H 0.092 0.908 19 N -0.361 5.361 20 C -0.374 4.374 21 H 0.092 0.908 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.193 1.193 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.212 4.212 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.296 0.704 33 H 0.287 0.713 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.254 0.746 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.216 23.018 -13.675 26.866 hybrid contribution 0.305 -1.917 0.376 1.977 sum 2.521 21.101 -13.299 25.069 Atomic orbital electron populations 1.21052 0.84620 1.06321 1.04741 1.21882 0.99019 0.85538 0.86610 1.67922 1.08779 1.31983 1.18747 1.20005 0.84054 0.84876 0.90645 1.84682 1.76002 1.30141 1.36315 1.67391 1.44742 0.99361 1.20202 1.19142 0.87207 0.84647 0.89211 1.84596 1.73856 1.34250 1.35866 1.21110 0.93384 0.98164 1.07319 1.20583 1.04585 0.93492 0.93960 1.20871 0.76668 0.80442 0.91452 1.90724 1.52532 1.55106 1.48176 1.45864 1.58191 1.22350 1.08653 1.22069 0.96060 0.94821 0.83731 0.87826 1.23657 0.97106 0.96673 1.00343 1.21697 0.94780 0.82942 0.97076 0.90783 1.42495 1.80830 1.01235 1.11530 1.19705 1.36638 0.89037 0.92028 0.90797 1.25501 1.03358 0.98189 0.99634 1.69792 1.55780 1.10385 1.25783 0.85149 0.76774 0.78862 0.79440 1.19288 1.22068 1.22228 1.24157 0.98902 0.97424 1.00689 0.89219 0.88445 0.86635 0.70449 0.71270 0.83142 0.84840 0.74551 0.90054 0.89050 0.79095 0.94030 0.90750 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.83 71.23 0.70 -0.47 16 2 C 0.21 3.95 6.82 42.45 0.29 4.24 16 3 N -0.55 -12.41 10.40 -301.73 -3.14 -15.55 16 4 C 0.51 12.16 8.71 180.58 1.57 13.73 16 5 O -0.46 -9.01 13.64 -87.52 -1.19 -10.20 16 6 N -0.58 -14.79 10.49 -426.36 -4.47 -19.26 16 7 C 0.38 8.50 7.81 84.84 0.66 9.16 16 8 O -0.48 -8.90 12.75 -88.15 -1.12 -10.02 16 9 C -0.19 -3.51 4.42 -19.59 -0.09 -3.59 16 10 C -0.09 -0.99 5.28 29.10 0.15 -0.84 16 11 C 0.52 9.78 7.82 87.66 0.69 10.46 16 12 O -0.59 -16.54 15.63 -3.00 -0.05 -16.59 16 13 N -0.70 -12.32 5.35 -440.04 -2.36 -14.68 16 14 C 0.14 3.38 4.24 45.52 0.19 3.57 16 15 H 0.10 2.75 7.46 -2.39 -0.02 2.73 16 16 C -0.14 -3.61 7.58 31.12 0.24 -3.38 16 17 C 0.15 5.20 4.48 45.51 0.20 5.41 16 18 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 19 N -0.72 -34.14 5.40 -320.44 -1.73 -35.87 16 20 C -0.24 -12.98 9.97 84.03 0.84 -12.14 16 21 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 23 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 24 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 C -0.17 -5.28 7.68 31.12 0.24 -5.04 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 0.48 6.06 -2.39 -0.01 0.46 16 32 H 0.43 3.29 9.06 -74.06 -0.67 2.62 16 33 H 0.42 5.64 9.06 -74.06 -0.67 4.97 16 34 H 0.15 0.59 6.07 -2.39 -0.01 0.58 16 35 H 0.13 1.16 7.63 -2.39 -0.02 1.14 16 36 H 0.42 4.99 8.73 -92.71 -0.81 4.18 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 2.29 8.09 -2.39 -0.02 2.27 16 39 H 0.38 18.81 7.92 -92.71 -0.73 18.07 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -79.24 362.76 -7.35 -86.59 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -1.76 Total: 27.78 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.15 Total: 17.42 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -11.41 Total: -142.19 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -2.36 Total: -36.82 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -79.24 -7.35 -86.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022883411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.190 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds