Wall clock time and date at job start Fri Apr 10 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32217 * 120.51315 * 2 1 4 4 C 1.31906 * 121.14499 * 180.02562 * 3 2 1 5 5 N 1.31755 * 122.19266 * 0.02893 * 4 3 2 6 6 C 1.32744 * 120.87219 * 359.67741 * 5 4 3 7 7 O 1.35285 * 120.61610 * 180.29330 * 6 5 4 8 8 C 1.39766 * 120.50644 * 180.02562 * 2 1 3 9 9 C 1.47538 * 120.98357 * 359.95747 * 8 2 1 10 10 O 1.21582 * 120.00631 * 89.99513 * 9 8 2 11 11 N 1.34783 * 119.99626 * 270.00153 * 9 8 2 12 12 C 1.46501 * 119.99965 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47195 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.51228 * 304.90238 * 13 12 11 15 15 C 1.52874 * 109.62721 * 184.90811 * 13 12 11 16 16 N 1.47146 * 108.61038 * 187.90024 * 15 13 12 17 17 C 1.36938 * 120.98166 * 230.49961 * 16 15 13 18 18 H 1.08004 * 120.00362 * 26.46603 * 17 16 15 19 19 C 1.38811 * 120.00369 * 206.46273 * 17 16 15 20 20 N 1.31624 * 119.99894 * 16.40694 * 19 17 16 21 21 Si 1.86793 * 120.00437 * 196.13282 * 19 17 16 22 22 H 1.48503 * 109.47164 * 59.99815 * 21 19 17 23 23 H 1.48503 * 109.47446 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47137 * 299.99970 * 21 19 17 25 25 C 1.47152 * 118.03553 * 50.22601 * 16 15 13 26 26 C 1.53291 * 108.38463 * 309.71610 * 25 16 15 27 27 O 1.42958 * 109.22268 * 52.30270 * 26 25 16 28 28 H 1.08997 * 109.46883 * 269.97613 * 1 2 3 29 29 H 1.09003 * 109.46804 * 29.97466 * 1 2 3 30 30 H 1.08996 * 109.47133 * 149.97569 * 1 2 3 31 31 H 1.07996 * 118.90231 * 180.02562 * 4 3 2 32 32 H 0.96699 * 113.99309 * 270.27889 * 7 6 5 33 33 H 0.97002 * 119.99921 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.46907 * 59.99826 * 12 11 9 35 35 H 1.08995 * 109.47254 * 300.00014 * 12 11 9 36 36 H 1.09004 * 109.61801 * 68.08073 * 15 13 12 37 37 H 1.09002 * 109.52448 * 307.66775 * 15 13 12 38 38 H 0.97001 * 120.00132 * 179.97438 * 20 19 17 39 39 H 1.08995 * 109.68009 * 69.44637 * 25 16 15 40 40 H 1.08998 * 109.67837 * 189.95158 * 25 16 15 41 41 H 1.09002 * 109.50962 * 172.22809 * 26 25 16 42 42 H 1.08996 * 109.51452 * 292.32644 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1536 -0.0005 5 7 4.2115 0.0464 -0.0016 6 6 3.6233 -1.1436 0.0042 7 8 4.3617 -2.2771 0.0090 8 6 2.2165 -1.2042 -0.0005 9 6 1.5123 -2.5006 -0.0002 10 8 1.2213 -3.0348 -1.0529 11 7 1.1914 -3.0928 1.1673 12 6 0.4916 -4.3799 1.1677 13 6 0.2498 -4.8285 2.6103 14 1 1.1975 -4.8508 3.1483 15 6 -0.3698 -6.2260 2.6165 16 7 -0.7674 -6.5573 3.9940 17 6 -0.3922 -7.7413 4.5706 18 1 0.5049 -8.2430 4.2390 19 6 -1.1647 -8.2967 5.5813 20 7 -2.3999 -7.8822 5.7688 21 14 -0.4542 -9.6378 6.6703 22 1 0.7430 -9.1178 7.3785 23 1 -1.4730 -10.0593 7.6651 24 1 -0.0675 -10.8020 5.8334 25 6 -1.5750 -5.5759 4.7357 26 6 -0.8922 -4.2077 4.6281 27 8 -0.6420 -3.9134 3.2517 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 4.0088 2.1048 -0.0001 32 1 4.5795 -2.6083 -0.8730 33 1 1.4238 -2.6668 2.0072 34 1 1.0996 -5.1242 0.6533 35 1 -0.4642 -4.2740 0.6547 36 1 0.3613 -6.9520 2.2608 37 1 -1.2460 -6.2389 1.9683 38 1 -2.9399 -8.2706 6.4748 39 1 -2.5747 -5.5223 4.3046 40 1 -1.6423 -5.8721 5.7825 41 1 -1.5422 -3.4422 5.0518 42 1 0.0509 -4.2275 5.1743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035483021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:04 Heat of formation + Delta-G solvation = -71.427621 kcal Electronic energy + Delta-G solvation = -27224.161917 eV Core-core repulsion = 23204.722557 eV Total energy + Delta-G solvation = -4019.439360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.54381 -40.72923 -39.91641 -38.87558 -36.54047 -35.83441 -35.33999 -33.50554 -33.14116 -32.19569 -29.90726 -29.19303 -27.43779 -25.95195 -24.95874 -23.97724 -23.44515 -22.11612 -21.35499 -20.04105 -19.24778 -19.09687 -18.76568 -17.66306 -17.44657 -17.15486 -16.89865 -16.31650 -16.10369 -15.76544 -15.57894 -15.49178 -15.30126 -15.02237 -14.66172 -14.49748 -14.44310 -13.91699 -13.77717 -13.60992 -13.24415 -13.14438 -13.00836 -12.68352 -12.55966 -12.47973 -12.19800 -12.10377 -11.88734 -11.50136 -11.39990 -11.16328 -10.80620 -10.68186 -10.56282 -10.54641 -10.24734 -8.76004 -7.92174 -5.39857 -0.57313 -0.28512 1.25385 1.46803 1.48491 1.55500 1.91890 2.12679 2.46407 2.48557 2.74845 2.88523 3.10938 3.23101 3.43352 3.47951 3.76353 3.94265 4.03976 4.07554 4.20231 4.25495 4.46300 4.51069 4.55551 4.59783 4.62004 4.71176 4.74342 4.88961 4.89491 5.04603 5.15886 5.21555 5.23782 5.54937 5.60552 5.64222 6.23721 6.27363 6.29740 6.32584 6.83128 6.94077 7.05570 7.73603 8.26754 9.13789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.002680 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.877054 B =10446.056684 C =10802.460702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.230 3.770 3 N -0.533 5.533 4 C 0.340 3.660 5 N -0.556 5.556 6 C 0.399 3.601 7 O -0.479 6.479 8 C -0.267 4.267 9 C 0.586 3.414 10 O -0.563 6.563 11 N -0.696 5.696 12 C 0.141 3.859 13 C 0.078 3.922 14 H 0.065 0.935 15 C 0.117 3.883 16 N -0.614 5.614 17 C -0.268 4.268 18 H 0.072 0.928 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.144 3.856 26 C 0.054 3.946 27 O -0.387 6.387 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.431 0.569 33 H 0.411 0.589 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.021 0.979 38 H 0.252 0.748 39 H 0.001 0.999 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 18.208 -10.609 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.084 3.916 3 N -0.250 5.250 4 C 0.054 3.946 5 N -0.282 5.282 6 C 0.211 3.789 7 O -0.290 6.290 8 C -0.276 4.276 9 C 0.371 3.629 10 O -0.443 6.443 11 N -0.346 5.346 12 C 0.017 3.983 13 C 0.018 3.982 14 H 0.083 0.917 15 C -0.009 4.009 16 N -0.338 5.338 17 C -0.398 4.398 18 H 0.090 0.910 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.202 1.202 25 C 0.018 3.982 26 C -0.024 4.024 27 O -0.306 6.306 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.295 0.705 33 H 0.247 0.753 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.579 18.690 -10.753 24.018 hybrid contribution -0.142 -2.023 0.785 2.175 sum 10.438 16.667 -9.968 22.048 Atomic orbital electron populations 1.20997 0.85758 1.05103 1.05368 1.22126 0.98631 0.85798 0.85077 1.68425 1.10741 1.28891 1.16910 1.25812 0.86077 0.97027 0.85667 1.68185 1.42861 0.98859 1.18276 1.19508 0.85470 0.86495 0.87437 1.84591 1.72326 1.35747 1.36333 1.21659 0.95250 0.96347 1.14325 1.17626 0.77957 0.83605 0.83739 1.90819 1.55666 1.65630 1.32143 1.45821 1.57779 1.22423 1.08552 1.21300 0.97615 0.84887 0.94503 1.22567 0.92837 0.90131 0.92621 0.91679 1.21509 0.97795 0.94918 0.86691 1.44316 1.62104 1.17323 1.10081 1.19508 1.04409 0.99224 1.16633 0.91019 1.25821 0.95053 1.00809 1.02762 1.70177 1.07642 1.46445 1.33810 0.85295 0.77291 0.79122 0.78445 1.20176 1.22017 1.20150 1.21300 0.91655 0.87637 0.97609 1.23154 0.99817 0.97526 0.81885 1.87793 1.66805 1.51251 1.24800 0.87480 0.87506 0.90655 0.74004 0.70456 0.75291 0.88842 0.90825 0.90931 0.96085 0.93914 0.98110 0.91574 0.87213 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.85 71.24 0.70 -1.12 16 2 C 0.23 4.41 6.86 42.87 0.29 4.71 16 3 N -0.53 -9.41 10.36 -187.21 -1.94 -11.35 16 4 C 0.34 5.08 12.27 180.86 2.22 7.30 16 5 N -0.56 -10.58 10.45 -312.04 -3.26 -13.85 16 6 C 0.40 8.19 7.85 85.18 0.67 8.86 16 7 O -0.48 -8.86 13.10 -85.70 -1.12 -9.99 16 8 C -0.27 -5.71 5.67 -19.83 -0.11 -5.83 16 9 C 0.59 14.56 5.51 86.70 0.48 15.04 16 10 O -0.56 -17.45 17.11 -3.97 -0.07 -17.51 16 11 N -0.70 -16.43 5.50 -466.28 -2.56 -19.00 16 12 C 0.14 3.75 5.35 86.38 0.46 4.21 16 13 C 0.08 2.48 2.80 30.55 0.09 2.56 16 14 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.12 4.65 6.00 86.21 0.52 5.17 16 16 N -0.61 -30.14 3.05 -698.37 -2.13 -32.27 16 17 C -0.27 -14.36 9.65 84.03 0.81 -13.55 16 18 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 19 C -0.05 -2.66 4.95 84.86 0.42 -2.24 16 20 N -0.94 -54.21 11.15 21.65 0.24 -53.97 16 21 Si 0.97 43.70 29.58 68.60 2.03 45.73 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.14 6.74 5.44 86.35 0.47 7.21 16 26 C 0.05 1.92 6.98 72.08 0.50 2.42 16 27 O -0.39 -13.06 10.33 -148.98 -1.54 -14.60 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.38 7.18 -2.39 -0.02 1.37 16 31 H 0.24 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.43 4.31 9.06 -74.06 -0.67 3.64 16 33 H 0.41 8.85 8.46 -92.71 -0.78 8.07 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.72 7.96 -2.38 -0.02 2.70 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.07 3.46 6.16 -2.39 -0.01 3.45 16 41 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.33 357.47 -3.21 -74.55 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.38 Total: 17.51 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 7.52 Total: 34.74 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -9.66 Total: -130.43 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -2.73 Total: -42.10 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.33 -3.21 -74.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035483021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.120 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds