Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46867 * 2 1 4 4 C 1.52998 * 109.47233 * 120.00156 * 2 1 3 5 5 N 1.46500 * 109.46808 * 305.00054 * 4 2 1 6 6 C 1.34780 * 119.99807 * 180.02562 * 5 4 2 7 7 O 1.21369 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.49313 * 120.00100 * 180.02562 * 6 5 4 9 9 O 1.21405 * 119.99977 * 359.97438 * 8 6 5 10 10 N 1.34770 * 120.00123 * 179.97438 * 8 6 5 11 11 C 1.40291 * 120.00335 * 179.97438 * 10 8 6 12 12 C 1.40726 * 126.09472 * 359.68659 * 11 10 8 13 13 N 1.30881 * 108.37302 * 179.85602 * 12 11 10 14 14 N 1.40063 * 108.43675 * 0.40547 * 13 12 11 15 15 C 1.37289 * 126.05720 * 179.74102 * 14 13 12 16 16 H 1.08001 * 120.00451 * 174.12714 * 15 14 13 17 17 C 1.39005 * 120.00089 * 354.12685 * 15 14 13 18 18 N 1.31283 * 120.00110 * 5.93203 * 17 15 14 19 19 Si 1.86801 * 120.00342 * 185.93769 * 17 15 14 20 20 H 1.48493 * 109.47297 * 94.97688 * 19 17 15 21 21 H 1.48499 * 109.47304 * 214.97852 * 19 17 15 22 22 H 1.48502 * 109.46874 * 334.97590 * 19 17 15 23 23 C 1.35784 * 126.10213 * 180.02562 * 11 10 8 24 24 C 1.52998 * 109.47053 * 240.00114 * 2 1 3 25 25 C 1.52998 * 117.49996 * 351.38013 * 24 2 1 26 26 C 1.53003 * 60.00302 * 107.48747 * 25 24 2 27 27 H 1.09000 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47320 * 299.99723 * 1 2 3 29 29 H 1.09004 * 109.47224 * 60.00000 * 1 2 3 30 30 H 0.96697 * 113.99555 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47085 * 64.99575 * 4 2 1 32 32 H 1.08997 * 109.47305 * 185.00266 * 4 2 1 33 33 H 0.97003 * 120.00422 * 359.97438 * 5 4 2 34 34 H 0.97003 * 119.99747 * 359.97438 * 10 8 6 35 35 H 1.07991 * 125.81412 * 359.97438 * 12 11 10 36 36 H 0.96994 * 120.00519 * 179.97438 * 18 17 15 37 37 H 1.08000 * 126.25514 * 359.93421 * 23 11 10 38 38 H 1.08998 * 115.56114 * 205.68301 * 24 2 1 39 39 H 1.08998 * 117.49538 * 214.97927 * 25 24 2 40 40 H 1.08992 * 117.49885 * 359.97438 * 25 24 2 41 41 H 1.08994 * 117.49679 * 252.50960 * 26 25 24 42 42 H 1.09003 * 117.49793 * 107.48306 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4558 -0.1037 2.4423 6 6 1.7648 -0.5768 3.6659 7 8 2.5265 -1.5149 3.7793 8 6 1.1690 0.0522 4.8820 9 8 0.4066 0.9902 4.7686 10 7 1.4775 -0.4212 6.1055 11 6 0.9181 0.1701 7.2481 12 6 0.0300 1.2616 7.2663 13 7 -0.2742 1.5252 8.5117 14 7 0.4112 0.6233 9.3355 15 6 0.3575 0.5800 10.7067 16 1 0.8521 -0.2173 11.2416 17 6 -0.3333 1.5623 11.4066 18 7 -1.0310 2.4642 10.7558 19 14 -0.2690 1.5995 13.2731 20 1 0.7971 2.5348 13.7132 21 1 -1.5784 2.0560 13.8046 22 1 0.0253 0.2371 13.7854 23 6 1.1420 -0.2044 8.5339 24 6 2.0400 -0.7212 -1.2492 25 6 1.0104 -1.4540 -2.1117 26 6 1.6357 -0.1494 -2.6096 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.9702 1.4237 0.0004 31 1 1.7516 -1.7715 1.2055 32 1 3.1263 -0.6443 1.2951 33 1 0.8473 0.6463 2.3518 34 1 2.0863 -1.1710 6.1960 35 1 -0.3394 1.7903 6.4002 36 1 -1.5134 3.1494 11.2442 37 1 1.7811 -1.0108 8.8622 38 1 3.0322 -1.1643 -1.1644 39 1 1.3253 -2.3793 -2.5942 40 1 -0.0302 -1.4227 -1.7889 41 1 1.0064 0.7405 -2.6146 42 1 2.3620 -0.2164 -3.4196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319346187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = -3.572798 kcal Electronic energy + Delta-G solvation = -26316.161582 eV Core-core repulsion = 22299.664628 eV Total energy + Delta-G solvation = -4016.496954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64211 -39.87529 -39.23379 -37.86420 -36.09007 -34.92420 -34.07048 -33.15265 -30.92228 -30.32115 -28.19221 -27.52113 -25.43570 -24.35638 -22.93664 -22.55775 -21.02050 -20.50773 -19.98324 -19.47039 -18.41629 -17.47079 -17.27598 -16.33721 -16.18696 -15.96351 -15.51246 -15.21512 -15.02839 -14.78911 -14.51724 -14.03702 -13.86884 -13.56582 -13.34242 -13.15692 -12.98511 -12.77993 -12.65536 -12.21927 -11.74968 -11.66078 -11.57282 -11.32212 -11.27850 -11.19799 -10.95579 -10.86835 -10.65722 -10.54894 -10.33537 -10.28303 -9.33072 -9.23341 -9.12893 -8.87218 -8.12646 -6.77979 -6.61013 -4.27897 1.64997 2.54808 2.93197 3.03821 3.09059 3.24465 3.32636 3.71451 3.74087 3.89007 4.00379 4.08003 4.30241 4.37042 4.43999 4.57865 4.61969 4.68301 4.87678 4.97112 5.02349 5.21300 5.27124 5.36582 5.38495 5.48687 5.55094 5.67091 5.73176 5.86628 6.13859 6.20077 6.36343 6.75525 6.89345 6.91628 7.16209 7.20083 7.28157 7.76017 7.85206 8.09811 8.18530 8.48715 8.69455 9.31466 9.59851 10.35093 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043290 B = 0.002062 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.644794 B =13573.555391 C =13939.601759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 O -0.549 6.549 4 C 0.097 3.903 5 N -0.698 5.698 6 C 0.514 3.486 7 O -0.531 6.531 8 C 0.483 3.517 9 O -0.522 6.522 10 N -0.583 5.583 11 C -0.069 4.069 12 C -0.026 4.026 13 N -0.261 5.261 14 N -0.139 5.139 15 C -0.322 4.322 16 H 0.118 0.882 17 C 0.046 3.954 18 N -0.767 5.767 19 Si 0.936 3.064 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.076 4.076 24 C -0.189 4.189 25 C -0.177 4.177 26 C -0.162 4.162 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.379 0.621 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.417 0.583 34 H 0.409 0.591 35 H 0.178 0.822 36 H 0.276 0.724 37 H 0.149 0.851 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -6.465 -21.101 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.111 3.889 3 O -0.355 6.355 4 C -0.027 4.027 5 N -0.353 5.353 6 C 0.296 3.704 7 O -0.407 6.407 8 C 0.264 3.736 9 O -0.399 6.399 10 N -0.226 5.226 11 C -0.175 4.175 12 C -0.202 4.202 13 N -0.092 5.092 14 N 0.094 4.906 15 C -0.455 4.455 16 H 0.136 0.864 17 C -0.171 4.171 18 N -0.393 5.393 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.228 4.228 24 C -0.208 4.208 25 C -0.213 4.213 26 C -0.199 4.199 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.227 0.773 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.255 0.745 34 H 0.244 0.756 35 H 0.195 0.805 36 H 0.086 0.914 37 H 0.167 0.833 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.196 -5.389 -20.272 21.391 hybrid contribution 1.339 -0.842 0.212 1.596 sum 5.535 -6.231 -20.060 21.723 Atomic orbital electron populations 1.21929 0.92056 1.02935 1.03561 1.20843 0.95251 0.82089 0.90742 1.86605 1.27063 1.25044 1.96809 1.22071 0.98697 0.98118 0.83787 1.45664 1.48690 1.36504 1.04478 1.20322 0.81693 0.83530 0.84885 1.90730 1.35290 1.27801 1.86882 1.19622 0.84442 0.85461 0.84056 1.90663 1.35607 1.27841 1.85785 1.42139 1.44084 1.32921 1.03454 1.17257 1.11170 1.04621 0.84487 1.24150 1.01151 0.98316 0.96579 1.78258 1.18408 1.14010 0.98497 1.44565 1.23540 1.17197 1.05250 1.19926 1.35710 1.12988 0.76853 0.86423 1.25672 0.94933 0.95027 1.01487 1.70210 1.21169 1.11343 1.36606 0.85788 0.78421 0.79423 0.80402 1.19587 1.20060 1.18716 1.21309 1.08181 1.04068 0.89241 1.22897 1.00498 1.05102 0.92268 1.23156 0.98787 0.96314 1.03080 1.22876 1.03604 0.97691 0.95741 0.90367 0.91191 0.91216 0.77318 0.90004 0.90761 0.74480 0.75610 0.80547 0.91354 0.83339 0.87298 0.88645 0.87760 0.88207 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 7.21 37.16 0.27 -0.87 16 2 C 0.15 1.14 0.88 -90.62 -0.08 1.06 16 3 O -0.55 -4.58 12.83 -35.23 -0.45 -5.03 16 4 C 0.10 0.89 4.80 -4.04 -0.02 0.87 16 5 N -0.70 -8.38 5.18 -60.77 -0.31 -8.69 16 6 C 0.51 7.83 7.88 -11.65 -0.09 7.74 16 7 O -0.53 -8.73 16.48 5.48 0.09 -8.64 16 8 C 0.48 8.84 7.85 -11.65 -0.09 8.75 16 9 O -0.52 -10.68 13.62 5.45 0.07 -10.61 16 10 N -0.58 -11.09 5.45 -10.45 -0.06 -11.15 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 12 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 13 N -0.26 -7.52 10.41 30.81 0.32 -7.20 16 14 N -0.14 -3.78 3.73 -11.40 -0.04 -3.83 16 15 C -0.32 -8.45 10.24 -14.82 -0.15 -8.61 16 16 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.20 11.84 55.50 0.66 -20.55 16 19 Si 0.94 18.74 29.56 -169.99 -5.02 13.72 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 24 C -0.19 -1.16 5.36 -90.62 -0.49 -1.64 16 25 C -0.18 -0.99 9.57 -26.73 -0.26 -1.25 16 26 C -0.16 -0.95 9.80 -26.73 -0.26 -1.21 16 27 H 0.08 0.52 6.97 -51.93 -0.36 0.16 16 28 H 0.07 0.62 6.58 -51.93 -0.34 0.28 16 29 H 0.07 0.51 7.07 -51.93 -0.37 0.14 16 30 H 0.38 2.05 9.04 45.56 0.41 2.47 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.42 5.02 6.46 -40.82 -0.26 4.75 16 34 H 0.41 6.69 8.29 -40.82 -0.34 6.36 16 35 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 36 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 38 H 0.11 0.60 8.11 -51.93 -0.42 0.17 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.57 5.85 -51.93 -0.30 0.26 16 41 H 0.10 0.65 7.61 -51.93 -0.40 0.25 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -33.29 357.42 -5.93 -39.23 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -4.35 Total: 16.47 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.22 Total: 0.88 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.56 Total: -51.40 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.29 Total: -24.28 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.29 -5.93 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319346187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.653 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds