Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46867 * 2 1 4 4 C 1.52998 * 109.47233 * 120.00156 * 2 1 3 5 5 N 1.46500 * 109.46808 * 305.00054 * 4 2 1 6 6 C 1.34780 * 119.99807 * 180.02562 * 5 4 2 7 7 O 1.21369 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.49313 * 120.00100 * 180.02562 * 6 5 4 9 9 O 1.21405 * 119.99977 * 359.97438 * 8 6 5 10 10 N 1.34770 * 120.00123 * 179.97438 * 8 6 5 11 11 C 1.40291 * 120.00335 * 179.97438 * 10 8 6 12 12 C 1.40726 * 126.09472 * 359.68659 * 11 10 8 13 13 N 1.30881 * 108.37302 * 179.85602 * 12 11 10 14 14 N 1.40063 * 108.43675 * 0.40547 * 13 12 11 15 15 C 1.37289 * 126.05720 * 179.74102 * 14 13 12 16 16 H 1.08001 * 120.00451 * 174.12714 * 15 14 13 17 17 C 1.39005 * 120.00089 * 354.12685 * 15 14 13 18 18 N 1.31283 * 120.00110 * 5.93203 * 17 15 14 19 19 Si 1.86801 * 120.00342 * 185.93769 * 17 15 14 20 20 H 1.48493 * 109.47297 * 94.97688 * 19 17 15 21 21 H 1.48499 * 109.47304 * 214.97852 * 19 17 15 22 22 H 1.48502 * 109.46874 * 334.97590 * 19 17 15 23 23 C 1.35784 * 126.10213 * 180.02562 * 11 10 8 24 24 C 1.52998 * 109.47053 * 240.00114 * 2 1 3 25 25 C 1.52998 * 117.49996 * 351.38013 * 24 2 1 26 26 C 1.53003 * 60.00302 * 107.48747 * 25 24 2 27 27 H 1.09000 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47320 * 299.99723 * 1 2 3 29 29 H 1.09004 * 109.47224 * 60.00000 * 1 2 3 30 30 H 0.96697 * 113.99555 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47085 * 64.99575 * 4 2 1 32 32 H 1.08997 * 109.47305 * 185.00266 * 4 2 1 33 33 H 0.97003 * 120.00422 * 359.97438 * 5 4 2 34 34 H 0.97003 * 119.99747 * 359.97438 * 10 8 6 35 35 H 1.07991 * 125.81412 * 359.97438 * 12 11 10 36 36 H 0.96994 * 120.00519 * 179.97438 * 18 17 15 37 37 H 1.08000 * 126.25514 * 359.93421 * 23 11 10 38 38 H 1.08998 * 115.56114 * 205.68301 * 24 2 1 39 39 H 1.08998 * 117.49538 * 214.97927 * 25 24 2 40 40 H 1.08992 * 117.49885 * 359.97438 * 25 24 2 41 41 H 1.08994 * 117.49679 * 252.50960 * 26 25 24 42 42 H 1.09003 * 117.49793 * 107.48306 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4558 -0.1037 2.4423 6 6 1.7648 -0.5768 3.6659 7 8 2.5265 -1.5149 3.7793 8 6 1.1690 0.0522 4.8820 9 8 0.4066 0.9902 4.7686 10 7 1.4775 -0.4212 6.1055 11 6 0.9181 0.1701 7.2481 12 6 0.0300 1.2616 7.2663 13 7 -0.2742 1.5252 8.5117 14 7 0.4112 0.6233 9.3355 15 6 0.3575 0.5800 10.7067 16 1 0.8521 -0.2173 11.2416 17 6 -0.3333 1.5623 11.4066 18 7 -1.0310 2.4642 10.7558 19 14 -0.2690 1.5995 13.2731 20 1 0.7971 2.5348 13.7132 21 1 -1.5784 2.0560 13.8046 22 1 0.0253 0.2371 13.7854 23 6 1.1420 -0.2044 8.5339 24 6 2.0400 -0.7212 -1.2492 25 6 1.0104 -1.4540 -2.1117 26 6 1.6357 -0.1494 -2.6096 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.9702 1.4237 0.0004 31 1 1.7516 -1.7715 1.2055 32 1 3.1263 -0.6443 1.2951 33 1 0.8473 0.6463 2.3518 34 1 2.0863 -1.1710 6.1960 35 1 -0.3394 1.7903 6.4002 36 1 -1.5134 3.1494 11.2442 37 1 1.7811 -1.0108 8.8622 38 1 3.0322 -1.1643 -1.1644 39 1 1.3253 -2.3793 -2.5942 40 1 -0.0302 -1.4227 -1.7889 41 1 1.0064 0.7405 -2.6146 42 1 2.3620 -0.2164 -3.4196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319346187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = -30.038932 kcal Electronic energy + Delta-G solvation = -26317.309240 eV Core-core repulsion = 22299.664628 eV Total energy + Delta-G solvation = -4017.644612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.05860 -41.28717 -40.30676 -39.27447 -36.77769 -36.21349 -35.45507 -34.88428 -32.30425 -31.66015 -29.92782 -28.45759 -27.09912 -25.63219 -23.78058 -23.16700 -22.85700 -21.72930 -21.27649 -20.70446 -19.80017 -19.19580 -17.99669 -17.48902 -17.44182 -17.12760 -17.07891 -16.63043 -16.11488 -16.00048 -15.57725 -15.45434 -15.08798 -14.92221 -14.80370 -14.68635 -13.93128 -13.54820 -13.52158 -13.39181 -13.32579 -13.01188 -12.90552 -12.85326 -12.51565 -12.10492 -12.06730 -11.97475 -11.83700 -11.43831 -11.13360 -11.08287 -10.96654 -10.86723 -10.55360 -10.35102 -10.14389 -8.62867 -8.49710 -6.27084 0.27177 1.27967 1.29067 1.41982 1.59168 1.72098 2.03159 2.11574 2.52565 2.55103 2.77730 2.93597 3.06434 3.40774 3.43137 3.52505 3.74410 3.86485 4.12460 4.17203 4.32819 4.39420 4.52210 4.55817 4.70802 4.76330 4.85427 4.93526 4.95415 4.98302 5.04633 5.11060 5.16567 5.21432 5.30160 5.30224 5.31961 5.89436 5.97665 6.23701 6.45960 6.66377 6.75808 6.81786 7.06546 7.41247 7.62279 8.49852 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043290 B = 0.002062 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.644794 B =13573.555391 C =13939.601759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 O -0.565 6.565 4 C 0.095 3.905 5 N -0.683 5.683 6 C 0.524 3.476 7 O -0.540 6.540 8 C 0.485 3.515 9 O -0.544 6.544 10 N -0.582 5.582 11 C -0.057 4.057 12 C -0.048 4.048 13 N -0.309 5.309 14 N -0.163 5.163 15 C -0.353 4.353 16 H 0.142 0.858 17 C -0.005 4.005 18 N -0.821 5.821 19 Si 1.020 2.980 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.243 1.243 23 C -0.073 4.073 24 C -0.189 4.189 25 C -0.175 4.175 26 C -0.163 4.163 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.391 0.609 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.418 0.582 34 H 0.424 0.576 35 H 0.175 0.825 36 H 0.278 0.722 37 H 0.189 0.811 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -8.176 -21.673 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.118 3.882 3 O -0.373 6.373 4 C -0.028 4.028 5 N -0.336 5.336 6 C 0.304 3.696 7 O -0.418 6.418 8 C 0.266 3.734 9 O -0.422 6.422 10 N -0.226 5.226 11 C -0.163 4.163 12 C -0.224 4.224 13 N -0.140 5.140 14 N 0.069 4.931 15 C -0.484 4.484 16 H 0.159 0.841 17 C -0.218 4.218 18 N -0.448 5.448 19 Si 0.839 3.161 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.166 1.166 23 C -0.224 4.224 24 C -0.208 4.208 25 C -0.212 4.212 26 C -0.200 4.200 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.241 0.759 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.256 0.744 34 H 0.261 0.739 35 H 0.192 0.808 36 H 0.088 0.912 37 H 0.206 0.794 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.669 -7.128 -20.905 22.803 hybrid contribution 0.920 -0.335 0.156 0.991 sum 6.589 -7.463 -20.749 23.014 Atomic orbital electron populations 1.21982 0.92431 1.03466 1.02975 1.20769 0.94961 0.81845 0.90629 1.86587 1.28375 1.25519 1.96812 1.22337 0.99161 0.98394 0.82905 1.45701 1.47728 1.35877 1.04304 1.19627 0.81792 0.83472 0.84666 1.90737 1.35934 1.28252 1.86877 1.20303 0.83489 0.84762 0.84811 1.90655 1.36423 1.28836 1.86308 1.42073 1.44505 1.33432 1.02631 1.17299 1.09761 1.03375 0.85894 1.24243 1.02450 0.99710 0.95988 1.78155 1.20235 1.15931 0.99702 1.44848 1.24507 1.17888 1.05906 1.20660 1.36568 1.14264 0.76952 0.84059 1.26899 0.93748 0.94011 1.07094 1.70377 1.22807 1.12611 1.39050 0.84564 0.78219 0.80288 0.73065 1.19178 1.20070 1.16570 1.22012 1.07460 1.03953 0.88994 1.22844 1.01122 1.05323 0.91530 1.23241 0.98718 0.96601 1.02661 1.22895 1.03739 0.97537 0.95807 0.89322 0.92704 0.90888 0.75923 0.89397 0.89789 0.74402 0.73867 0.80836 0.91226 0.79406 0.86246 0.87664 0.87735 0.89077 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.21 71.98 0.52 -1.64 16 2 C 0.16 2.11 0.88 -10.80 -0.01 2.10 16 3 O -0.56 -8.58 12.83 -148.98 -1.91 -10.50 16 4 C 0.09 1.53 4.80 86.38 0.41 1.94 16 5 N -0.68 -15.37 5.18 -464.54 -2.41 -17.78 16 6 C 0.52 15.18 7.88 87.23 0.69 15.87 16 7 O -0.54 -16.65 16.48 -3.31 -0.05 -16.70 16 8 C 0.48 17.40 7.85 87.23 0.69 18.09 16 9 O -0.54 -22.43 13.62 -3.42 -0.05 -22.48 16 10 N -0.58 -21.54 5.45 -305.33 -1.66 -23.21 16 11 C -0.06 -2.64 6.90 37.83 0.26 -2.38 16 12 C -0.05 -2.60 10.85 85.44 0.93 -1.67 16 13 N -0.31 -18.41 10.41 -56.43 -0.59 -19.00 16 14 N -0.16 -9.03 3.73 -189.98 -0.71 -9.73 16 15 C -0.35 -18.55 10.24 84.02 0.86 -17.69 16 16 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 17 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 18 N -0.82 -46.87 11.84 21.66 0.26 -46.61 16 19 Si 1.02 38.20 29.56 68.60 2.03 40.22 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 23 C -0.07 -3.41 11.50 83.41 0.96 -2.45 16 24 C -0.19 -1.89 5.36 -10.79 -0.06 -1.95 16 25 C -0.18 -1.59 9.57 30.59 0.29 -1.29 16 26 C -0.16 -1.59 9.80 30.60 0.30 -1.29 16 27 H 0.09 1.05 6.97 -2.39 -0.02 1.03 16 28 H 0.05 0.94 6.58 -2.39 -0.02 0.93 16 29 H 0.07 0.99 7.07 -2.38 -0.02 0.97 16 30 H 0.39 3.57 9.04 -74.06 -0.67 2.90 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.42 9.67 6.46 -92.71 -0.60 9.07 16 34 H 0.42 13.11 8.29 -92.71 -0.77 12.34 16 35 H 0.17 9.18 5.92 -2.91 -0.02 9.17 16 36 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 38 H 0.12 0.97 8.11 -2.39 -0.02 0.95 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.94 5.85 -2.39 -0.01 0.92 16 41 H 0.09 1.06 7.61 -2.39 -0.02 1.05 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.66 357.42 0.28 -73.38 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -0.93 Total: 44.57 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.31 Total: 7.82 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -5.11 Total: -116.33 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -2.01 Total: -49.67 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Total: -73.66 0.28 -73.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319346187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.342 kcal (2) G-P(sol) polarization free energy of solvation -73.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds