Wall clock time and date at job start Fri Apr 10 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90682 * 2 1 4 4 C 1.53779 * 113.61731 * 228.74209 * 2 1 3 5 5 H 1.08999 * 113.61062 * 105.38926 * 4 2 1 6 6 O 1.42899 * 113.61486 * 334.57325 * 4 2 1 7 7 C 1.53779 * 87.08402 * 220.02348 * 4 2 1 8 8 C 1.53784 * 87.08045 * 25.43458 * 7 4 2 9 9 H 1.08994 * 113.61477 * 89.11454 * 8 7 4 10 10 N 1.46496 * 113.61320 * 220.02163 * 8 7 4 11 11 C 1.34774 * 120.00099 * 252.49766 * 10 8 7 12 12 O 1.21372 * 119.99729 * 359.97438 * 11 10 8 13 13 C 1.49306 * 120.00441 * 180.02562 * 11 10 8 14 14 O 1.21408 * 119.99983 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00028 * 179.97438 * 13 11 10 16 16 C 1.40302 * 119.99986 * 179.97438 * 15 13 11 17 17 C 1.40716 * 126.09858 * 359.69238 * 16 15 13 18 18 N 1.30874 * 108.37837 * 179.87357 * 17 16 15 19 19 N 1.40060 * 108.43488 * 0.38324 * 18 17 16 20 20 C 1.37291 * 126.05797 * 179.77117 * 19 18 17 21 21 H 1.08004 * 120.00118 * 179.97438 * 20 19 18 22 22 C 1.39002 * 120.00068 * 359.97438 * 20 19 18 23 23 N 1.31287 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46977 * 119.99846 * 24 22 20 27 27 H 1.48501 * 109.47520 * 239.99812 * 24 22 20 28 28 C 1.35785 * 126.09899 * 179.97438 * 16 15 13 29 29 H 1.08994 * 109.47401 * 288.75252 * 1 2 3 30 30 H 1.09006 * 109.46633 * 48.75292 * 1 2 3 31 31 H 1.09005 * 109.47442 * 168.74578 * 1 2 3 32 32 H 1.09004 * 109.46638 * 191.24837 * 3 2 1 33 33 H 1.08993 * 109.46951 * 311.24511 * 3 2 1 34 34 H 1.08996 * 109.47178 * 71.24795 * 3 2 1 35 35 H 0.96703 * 113.99860 * 179.97438 * 6 4 2 36 36 H 1.09002 * 113.61557 * 270.88569 * 7 4 2 37 37 H 1.09004 * 113.61501 * 139.97990 * 7 4 2 38 38 H 0.97002 * 120.00490 * 72.49429 * 10 8 7 39 39 H 0.96998 * 120.00545 * 0.02562 * 15 13 11 40 40 H 1.08010 * 125.81564 * 0.02562 * 17 16 15 41 41 H 0.96998 * 119.99912 * 179.97438 * 23 22 20 42 42 H 1.07992 * 126.25343 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9292 -1.0592 5 1 2.5638 -0.3990 -1.9151 6 8 1.2920 -2.0100 -1.4389 7 6 3.1923 -1.3137 0.0002 8 6 2.1459 -0.9291 1.0595 9 1 1.4944 -1.7535 1.3491 10 7 2.7090 -0.2164 2.2089 11 6 2.8171 -0.8376 3.4000 12 8 2.4475 -1.9873 3.5205 13 6 3.3904 -0.1111 4.5716 14 8 3.7597 1.0392 4.4512 15 7 3.4980 -0.7322 5.7629 16 6 4.0373 -0.0496 6.8637 17 6 4.5090 1.2761 6.8673 18 7 4.9320 1.5603 8.0728 19 7 4.7567 0.4303 8.8815 20 6 5.0840 0.3295 10.2110 21 1 4.9051 -0.5934 10.7428 22 6 5.6457 1.4152 10.8728 23 7 5.8636 2.5369 10.2264 24 14 6.0904 1.2782 12.6819 25 1 5.7480 -0.0803 13.1744 26 1 7.5466 1.5137 12.8529 27 1 5.3307 2.2921 13.4567 28 6 4.2020 -0.5523 8.1143 29 1 -0.3634 0.3304 0.9730 30 1 -0.3633 0.6776 -0.7727 31 1 -0.3634 -1.0079 -0.2006 32 1 3.1954 1.3516 -0.2005 33 1 1.6429 2.0077 -0.7727 34 1 1.9626 1.8726 0.9731 35 1 1.6739 -2.5977 -2.1052 36 1 4.0711 -0.6688 0.0002 37 1 3.4443 -2.3742 0.0003 38 1 3.0041 0.7027 2.1127 39 1 3.2034 -1.6513 5.8591 40 1 4.5180 1.9461 6.0202 41 1 6.2551 3.2946 10.6883 42 1 3.9419 -1.5479 8.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320589809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:00 Heat of formation + Delta-G solvation = -9.321378 kcal Electronic energy + Delta-G solvation = -26635.782968 eV Core-core repulsion = 22619.036737 eV Total energy + Delta-G solvation = -4016.746231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.09018 -40.12035 -39.23384 -37.79288 -35.85852 -34.51793 -33.40320 -32.98491 -30.75564 -30.32657 -28.09899 -27.78332 -26.05623 -24.83402 -23.22801 -22.79214 -21.03729 -20.31658 -19.52613 -19.15335 -18.13336 -17.46896 -17.41561 -16.39881 -15.80645 -15.63739 -15.48685 -15.29965 -15.13605 -14.46277 -14.07681 -13.96356 -13.79557 -13.59961 -13.17749 -13.00648 -12.93765 -12.77906 -12.64663 -12.42590 -12.06983 -11.74945 -11.57733 -11.38439 -11.31242 -11.27413 -11.17629 -10.84430 -10.53312 -10.46003 -10.30179 -10.12487 -9.24438 -9.18744 -9.11467 -8.88157 -8.13497 -6.78473 -6.61176 -4.28291 1.64804 2.61891 2.91942 3.03688 3.09423 3.31434 3.53666 3.70468 3.75317 3.96898 4.04559 4.23787 4.35974 4.45042 4.59996 4.64879 4.83075 4.97594 5.00031 5.04609 5.23758 5.28118 5.33789 5.54117 5.58874 5.63856 5.70501 5.80009 5.96097 6.12914 6.19685 6.28884 6.35527 6.75450 6.88509 6.91599 7.15745 7.24001 7.25108 7.76375 7.86317 8.10296 8.17892 8.48184 8.68983 9.30726 9.59298 10.34706 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040629 B = 0.002195 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.001311 B =12752.893742 C =13093.647966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.090 3.910 5 H 0.074 0.926 6 O -0.546 6.546 7 C -0.184 4.184 8 C 0.136 3.864 9 H 0.122 0.878 10 N -0.695 5.695 11 C 0.516 3.484 12 O -0.528 6.528 13 C 0.483 3.517 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.077 4.077 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.381 0.619 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.275 0.725 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -5.741 -20.041 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 C -0.196 4.196 4 C 0.030 3.970 5 H 0.092 0.908 6 O -0.352 6.352 7 C -0.223 4.223 8 C 0.031 3.969 9 H 0.140 0.860 10 N -0.349 5.349 11 C 0.297 3.703 12 O -0.403 6.403 13 C 0.264 3.736 14 O -0.402 6.402 15 N -0.226 5.226 16 C -0.175 4.175 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.453 4.453 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.161 -4.337 -18.791 20.245 hybrid contribution 0.242 -1.092 -0.147 1.128 sum -5.920 -5.430 -18.938 20.571 Atomic orbital electron populations 1.21612 0.92829 1.02965 1.01681 1.22374 0.97137 0.94793 0.94143 1.21649 1.00959 0.93767 1.03208 1.22621 0.90662 0.88608 0.95143 0.90775 1.86451 1.44267 1.41223 1.63239 1.24139 0.98291 1.03109 0.96767 1.22673 0.95493 0.95669 0.83075 0.86014 1.45779 1.62576 1.17746 1.08795 1.20352 0.78940 0.86602 0.84386 1.90729 1.48000 1.17144 1.84460 1.19677 0.82879 0.87152 0.83933 1.90649 1.49112 1.16840 1.83558 1.42156 1.57314 1.15780 1.07300 1.17257 1.17960 0.95295 0.86995 1.24145 1.04266 0.94537 0.97303 1.78259 1.24868 1.06210 0.99785 1.44572 1.32503 1.06160 1.07302 1.19972 1.42357 1.01493 0.81520 0.86384 1.25674 0.95758 0.94644 1.01103 1.70219 1.31259 1.01597 1.36315 0.85737 0.78697 0.79280 0.80293 1.18613 1.19868 1.19858 1.21312 1.13868 0.96527 0.91172 0.92451 0.92482 0.91052 0.91740 0.91350 0.91017 0.77115 0.88732 0.90165 0.74882 0.75582 0.80559 0.91409 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.04 37.16 0.34 -0.82 16 2 C -0.08 -0.69 1.35 -153.69 -0.21 -0.90 16 3 C -0.14 -0.98 8.06 37.16 0.30 -0.68 16 4 C 0.09 0.63 4.69 -25.92 -0.12 0.51 16 5 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 6 O -0.55 -3.95 12.12 -35.23 -0.43 -4.38 16 7 C -0.18 -1.53 7.36 -25.92 -0.19 -1.72 16 8 C 0.14 1.41 3.63 -67.12 -0.24 1.17 16 9 H 0.12 1.51 7.42 -51.93 -0.39 1.12 16 10 N -0.70 -8.49 5.22 -53.49 -0.28 -8.77 16 11 C 0.52 7.99 7.88 -11.65 -0.09 7.90 16 12 O -0.53 -8.95 16.08 5.48 0.09 -8.86 16 13 C 0.48 8.82 7.85 -11.65 -0.09 8.73 16 14 O -0.52 -10.57 13.62 5.45 0.07 -10.50 16 15 N -0.58 -11.12 5.45 -10.46 -0.06 -11.18 16 16 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 17 C -0.03 -0.70 10.84 -17.02 -0.18 -0.88 16 18 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 19 N -0.14 -3.77 3.73 -11.40 -0.04 -3.82 16 20 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 21 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -21.16 11.81 55.50 0.66 -20.51 16 24 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.68 6.96 -51.93 -0.36 0.32 16 32 H 0.06 0.40 7.34 -51.93 -0.38 0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.56 7.10 -51.93 -0.37 0.19 16 35 H 0.38 1.16 9.12 45.56 0.42 1.57 16 36 H 0.09 0.73 7.65 -51.93 -0.40 0.33 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.41 4.67 6.13 -40.82 -0.25 4.42 16 39 H 0.41 6.77 8.29 -40.82 -0.34 6.43 16 40 H 0.18 4.43 5.92 -52.48 -0.31 4.12 16 41 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -33.51 354.94 -5.31 -38.82 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -4.46 Total: 15.68 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.51 Total: 1.63 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.60 Total: -51.42 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.26 Total: -23.74 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.51 -5.31 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds