Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90682 * 2 1 4 4 C 1.53779 * 113.61731 * 228.74209 * 2 1 3 5 5 H 1.08999 * 113.61062 * 105.38926 * 4 2 1 6 6 O 1.42899 * 113.61486 * 334.57325 * 4 2 1 7 7 C 1.53779 * 87.08402 * 220.02348 * 4 2 1 8 8 C 1.53784 * 87.08045 * 25.43458 * 7 4 2 9 9 H 1.08994 * 113.61477 * 89.11454 * 8 7 4 10 10 N 1.46496 * 113.61320 * 220.02163 * 8 7 4 11 11 C 1.34774 * 120.00099 * 252.49766 * 10 8 7 12 12 O 1.21372 * 119.99729 * 359.97438 * 11 10 8 13 13 C 1.49306 * 120.00441 * 180.02562 * 11 10 8 14 14 O 1.21408 * 119.99983 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00028 * 179.97438 * 13 11 10 16 16 C 1.40302 * 119.99986 * 179.97438 * 15 13 11 17 17 C 1.40716 * 126.09858 * 359.69238 * 16 15 13 18 18 N 1.30874 * 108.37837 * 179.87357 * 17 16 15 19 19 N 1.40060 * 108.43488 * 0.38324 * 18 17 16 20 20 C 1.37291 * 126.05797 * 179.77117 * 19 18 17 21 21 H 1.08004 * 120.00118 * 179.97438 * 20 19 18 22 22 C 1.39002 * 120.00068 * 359.97438 * 20 19 18 23 23 N 1.31287 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46977 * 119.99846 * 24 22 20 27 27 H 1.48501 * 109.47520 * 239.99812 * 24 22 20 28 28 C 1.35785 * 126.09899 * 179.97438 * 16 15 13 29 29 H 1.08994 * 109.47401 * 288.75252 * 1 2 3 30 30 H 1.09006 * 109.46633 * 48.75292 * 1 2 3 31 31 H 1.09005 * 109.47442 * 168.74578 * 1 2 3 32 32 H 1.09004 * 109.46638 * 191.24837 * 3 2 1 33 33 H 1.08993 * 109.46951 * 311.24511 * 3 2 1 34 34 H 1.08996 * 109.47178 * 71.24795 * 3 2 1 35 35 H 0.96703 * 113.99860 * 179.97438 * 6 4 2 36 36 H 1.09002 * 113.61557 * 270.88569 * 7 4 2 37 37 H 1.09004 * 113.61501 * 139.97990 * 7 4 2 38 38 H 0.97002 * 120.00490 * 72.49429 * 10 8 7 39 39 H 0.96998 * 120.00545 * 0.02562 * 15 13 11 40 40 H 1.08010 * 125.81564 * 0.02562 * 17 16 15 41 41 H 0.96998 * 119.99912 * 179.97438 * 23 22 20 42 42 H 1.07992 * 126.25343 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9292 -1.0592 5 1 2.5638 -0.3990 -1.9151 6 8 1.2920 -2.0100 -1.4389 7 6 3.1923 -1.3137 0.0002 8 6 2.1459 -0.9291 1.0595 9 1 1.4944 -1.7535 1.3491 10 7 2.7090 -0.2164 2.2089 11 6 2.8171 -0.8376 3.4000 12 8 2.4475 -1.9873 3.5205 13 6 3.3904 -0.1111 4.5716 14 8 3.7597 1.0392 4.4512 15 7 3.4980 -0.7322 5.7629 16 6 4.0373 -0.0496 6.8637 17 6 4.5090 1.2761 6.8673 18 7 4.9320 1.5603 8.0728 19 7 4.7567 0.4303 8.8815 20 6 5.0840 0.3295 10.2110 21 1 4.9051 -0.5934 10.7428 22 6 5.6457 1.4152 10.8728 23 7 5.8636 2.5369 10.2264 24 14 6.0904 1.2782 12.6819 25 1 5.7480 -0.0803 13.1744 26 1 7.5466 1.5137 12.8529 27 1 5.3307 2.2921 13.4567 28 6 4.2020 -0.5523 8.1143 29 1 -0.3634 0.3304 0.9730 30 1 -0.3633 0.6776 -0.7727 31 1 -0.3634 -1.0079 -0.2006 32 1 3.1954 1.3516 -0.2005 33 1 1.6429 2.0077 -0.7727 34 1 1.9626 1.8726 0.9731 35 1 1.6739 -2.5977 -2.1052 36 1 4.0711 -0.6688 0.0002 37 1 3.4443 -2.3742 0.0003 38 1 3.0041 0.7027 2.1127 39 1 3.2034 -1.6513 5.8591 40 1 4.5180 1.9461 6.0202 41 1 6.2551 3.2946 10.6883 42 1 3.9419 -1.5479 8.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320589809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = -36.275482 kcal Electronic energy + Delta-G solvation = -26636.951786 eV Core-core repulsion = 22619.036737 eV Total energy + Delta-G solvation = -4017.915049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18530 -41.60511 -40.67844 -39.22105 -36.63429 -36.06805 -35.08130 -34.19866 -32.30486 -31.43228 -29.91985 -28.40167 -27.50978 -26.38924 -24.32470 -23.55462 -22.89516 -21.72747 -21.25466 -20.25453 -19.33285 -18.97960 -18.29347 -17.55476 -17.44496 -17.01622 -16.79076 -16.58264 -16.13451 -15.80637 -15.50114 -15.33500 -14.88297 -14.87895 -14.77575 -14.49403 -13.81883 -13.52723 -13.39731 -13.39039 -13.28520 -13.06845 -12.94679 -12.94492 -12.77309 -12.48110 -12.04203 -12.02893 -11.99979 -11.95066 -11.10390 -11.09083 -10.88621 -10.77401 -10.52036 -10.17577 -10.14774 -8.63629 -8.49670 -6.27272 0.25310 1.27732 1.29508 1.42148 1.59967 1.71085 2.01927 2.11273 2.51627 2.57586 2.92318 3.01145 3.06945 3.34299 3.50885 3.62610 3.73710 4.02155 4.20095 4.38735 4.46942 4.50317 4.51381 4.69111 4.74986 4.85216 4.93729 4.94530 4.96339 4.97699 5.07553 5.11818 5.20162 5.24712 5.29554 5.36658 5.50626 5.89616 6.00468 6.24143 6.46926 6.66243 6.78679 6.93731 7.04882 7.40371 7.61860 8.49778 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040629 B = 0.002195 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.001311 B =12752.893742 C =13093.647966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.102 3.898 5 H 0.101 0.899 6 O -0.563 6.563 7 C -0.178 4.178 8 C 0.120 3.880 9 H 0.101 0.899 10 N -0.677 5.677 11 C 0.523 3.477 12 O -0.543 6.543 13 C 0.486 3.514 14 O -0.542 6.542 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.048 4.048 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.352 4.352 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.242 1.242 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.075 4.075 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.399 0.601 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.419 0.581 39 H 0.423 0.577 40 H 0.177 0.823 41 H 0.278 0.722 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -6.951 -21.084 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 C -0.196 4.196 4 C 0.042 3.958 5 H 0.119 0.881 6 O -0.372 6.372 7 C -0.217 4.217 8 C 0.016 3.984 9 H 0.119 0.881 10 N -0.330 5.330 11 C 0.304 3.696 12 O -0.420 6.420 13 C 0.267 3.733 14 O -0.420 6.420 15 N -0.227 5.227 16 C -0.163 4.163 17 C -0.223 4.223 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.483 4.483 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.448 5.448 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.226 4.226 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.258 0.742 39 H 0.260 0.740 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.399 -5.579 -19.905 21.640 hybrid contribution 0.216 -0.767 -0.038 0.797 sum -6.184 -6.346 -19.943 21.823 Atomic orbital electron populations 1.21588 0.93278 1.02585 1.01505 1.22424 0.96800 0.95437 0.93551 1.21676 1.01793 0.92924 1.03199 1.22553 0.89552 0.88284 0.95373 0.88114 1.86417 1.44864 1.41752 1.64137 1.24144 0.98379 1.03191 0.96013 1.22943 0.96708 0.95968 0.82821 0.88116 1.45809 1.61105 1.17899 1.08179 1.19774 0.79232 0.86222 0.84402 1.90732 1.49116 1.17581 1.84616 1.20271 0.81663 0.86929 0.84388 1.90639 1.49498 1.17882 1.83994 1.42096 1.57629 1.16331 1.06633 1.17297 1.16507 0.94402 0.88107 1.24259 1.05227 0.96003 0.96844 1.78155 1.26570 1.08151 1.01009 1.44851 1.33781 1.06487 1.07979 1.20693 1.43062 1.02891 0.81663 0.84100 1.26891 0.94857 0.93770 1.06260 1.70382 1.32908 1.02780 1.38762 0.84521 0.78083 0.80104 0.73412 1.16440 1.19689 1.19707 1.22002 1.12281 0.97444 0.90911 0.93548 0.91145 0.92112 0.90619 0.89815 0.92089 0.74968 0.87726 0.90446 0.74201 0.73964 0.80657 0.91221 0.79539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.04 71.98 0.65 -1.47 16 2 C -0.08 -1.18 1.35 -51.65 -0.07 -1.25 16 3 C -0.14 -1.63 8.06 71.98 0.58 -1.05 16 4 C 0.10 1.16 4.69 31.12 0.15 1.31 16 5 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 6 O -0.56 -6.90 12.12 -148.98 -1.81 -8.70 16 7 C -0.18 -2.57 7.36 31.12 0.23 -2.34 16 8 C 0.12 2.35 3.63 45.52 0.17 2.51 16 9 H 0.10 2.46 7.42 -2.39 -0.02 2.44 16 10 N -0.68 -15.87 5.22 -441.51 -2.30 -18.17 16 11 C 0.52 15.85 7.88 87.22 0.69 16.54 16 12 O -0.54 -18.02 16.08 -3.31 -0.05 -18.08 16 13 C 0.49 17.56 7.85 87.22 0.69 18.25 16 14 O -0.54 -21.94 13.62 -3.43 -0.05 -21.99 16 15 N -0.58 -21.86 5.45 -305.33 -1.66 -23.52 16 16 C -0.06 -2.64 6.90 37.82 0.26 -2.38 16 17 C -0.05 -2.56 10.84 85.44 0.93 -1.63 16 18 N -0.31 -18.25 10.39 -56.43 -0.59 -18.83 16 19 N -0.16 -9.00 3.73 -189.98 -0.71 -9.71 16 20 C -0.35 -18.48 10.25 84.02 0.86 -17.62 16 21 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 22 C -0.01 -0.29 5.50 84.96 0.47 0.17 16 23 N -0.82 -46.67 11.81 21.66 0.26 -46.41 16 24 Si 1.02 38.15 29.55 68.60 2.03 40.18 16 25 H -0.24 -8.13 7.11 99.48 0.71 -7.42 16 26 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 27 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 28 C -0.08 -3.53 11.50 83.41 0.96 -2.57 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.06 1.10 6.96 -2.38 -0.02 1.09 16 32 H 0.07 0.73 7.34 -2.38 -0.02 0.71 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.86 7.10 -2.39 -0.02 0.84 16 35 H 0.40 1.43 9.12 -74.06 -0.68 0.75 16 36 H 0.10 1.32 7.65 -2.39 -0.02 1.30 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.42 9.00 6.13 -92.71 -0.57 8.43 16 39 H 0.42 13.49 8.29 -92.71 -0.77 12.72 16 40 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 41 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -74.76 354.94 0.75 -74.01 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.91 Total: 42.77 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.55 Total: 8.47 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.01 Total: -116.65 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.91 Total: -48.77 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -74.76 0.75 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.733 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds