Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 112.90788 * 2 1 4 4 C 1.54052 * 113.61037 * 228.63350 * 2 1 3 5 5 H 1.09000 * 113.69997 * 25.48288 * 4 2 1 6 6 O 1.42901 * 113.61084 * 156.38281 * 4 2 1 7 7 C 1.53783 * 87.07848 * 270.92520 * 4 2 1 8 8 C 1.53781 * 113.61326 * 131.25187 * 2 1 3 9 9 H 1.09002 * 113.61445 * 203.66487 * 8 2 1 10 10 N 1.46497 * 113.61305 * 334.48194 * 8 2 1 11 11 C 1.34780 * 119.99653 * 203.46742 * 10 8 2 12 12 O 1.21360 * 120.00344 * 0.02562 * 11 10 8 13 13 C 1.49314 * 119.99593 * 179.97438 * 11 10 8 14 14 O 1.21402 * 120.00298 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99685 * 180.02562 * 13 11 10 16 16 C 1.40295 * 120.00063 * 180.02562 * 15 13 11 17 17 C 1.40727 * 126.09701 * 0.02562 * 16 15 13 18 18 N 1.30876 * 108.37378 * 179.97438 * 17 16 15 19 19 N 1.40060 * 108.43755 * 359.97438 * 18 17 16 20 20 C 1.37298 * 126.05623 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99947 * 179.97438 * 20 19 18 22 22 C 1.39005 * 119.99693 * 359.97217 * 20 19 18 23 23 N 1.31282 * 120.00573 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99835 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46957 * 60.00095 * 24 22 20 26 26 H 1.48498 * 109.47093 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46859 * 300.00149 * 24 22 20 28 28 C 1.35782 * 126.10115 * 179.71407 * 16 15 13 29 29 H 1.09003 * 109.46796 * 288.75111 * 1 2 3 30 30 H 1.09005 * 109.47091 * 48.74790 * 1 2 3 31 31 H 1.08995 * 109.46983 * 168.74709 * 1 2 3 32 32 H 1.09008 * 109.47535 * 191.25286 * 3 2 1 33 33 H 1.09000 * 109.47633 * 311.25098 * 3 2 1 34 34 H 1.09004 * 109.47511 * 71.25255 * 3 2 1 35 35 H 0.96707 * 113.99766 * 176.99621 * 6 4 2 36 36 H 1.08992 * 113.61796 * 220.02286 * 7 4 2 37 37 H 1.09005 * 113.68996 * 89.12897 * 7 4 2 38 38 H 0.96995 * 120.00146 * 23.47603 * 10 8 2 39 39 H 0.96999 * 120.00229 * 359.97438 * 15 13 11 40 40 H 1.08002 * 125.81198 * 359.97438 * 17 16 15 41 41 H 0.97003 * 120.00348 * 179.97438 * 23 22 20 42 42 H 1.07999 * 126.25538 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4092 0.0000 4 6 2.1470 -0.9329 -1.0594 5 1 1.4970 -1.1144 -1.9153 6 8 3.4756 -0.5682 -1.4390 7 6 2.0929 -2.0445 0.0019 8 6 2.1460 -0.9291 1.0593 9 1 3.1591 -0.6499 1.3490 10 7 1.2711 -1.1688 2.2097 11 6 1.7998 -1.5402 3.3925 12 8 3.0006 -1.6756 3.5048 13 6 0.9082 -1.7840 4.5651 14 8 -0.2930 -1.6481 4.4529 15 7 1.4369 -2.1549 5.7480 16 6 0.5991 -2.3844 6.8497 17 6 -0.8032 -2.2667 6.8637 18 7 -1.2299 -2.5601 8.0657 19 7 -0.1231 -2.8759 8.8638 20 6 -0.1584 -3.2375 10.1878 21 1 0.7594 -3.4617 10.7110 22 6 -1.3754 -3.3148 10.8549 23 7 -2.4912 -3.0427 10.2188 24 14 -1.4235 -3.8060 12.6566 25 1 -0.6374 -2.8324 13.4561 26 1 -2.8309 -3.8142 13.1301 27 1 -0.8403 -5.1624 12.8155 28 6 0.9960 -2.7656 8.0910 29 1 -0.3633 0.3304 0.9732 30 1 -0.3633 0.6776 -0.7726 31 1 -0.3633 -1.0079 -0.2005 32 1 3.1955 1.3517 -0.2005 33 1 1.6429 2.0078 -0.7726 34 1 1.9628 1.8726 0.9732 35 1 3.8853 -1.1763 -2.0696 36 1 2.9712 -2.6898 0.0035 37 1 1.1570 -2.6033 0.0035 38 1 0.3114 -1.0604 2.1200 39 1 2.3965 -2.2638 5.8376 40 1 -1.4219 -1.9827 6.0253 41 1 -3.3405 -3.0971 10.6843 42 1 2.0121 -2.9471 8.4090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320589812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = -9.264190 kcal Electronic energy + Delta-G solvation = -26634.992643 eV Core-core repulsion = 22618.248892 eV Total energy + Delta-G solvation = -4016.743751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08391 -40.11668 -39.23121 -37.79327 -35.85659 -34.51682 -33.40126 -32.98387 -30.75848 -30.32573 -28.09774 -27.78434 -26.05456 -24.83139 -23.22880 -22.79704 -21.03616 -20.31429 -19.52587 -19.15554 -18.12013 -17.46231 -17.40496 -16.40967 -15.81264 -15.64168 -15.47944 -15.30502 -15.13832 -14.45314 -14.08826 -13.96926 -13.80427 -13.60138 -13.17843 -12.99724 -12.94707 -12.78123 -12.64029 -12.42612 -12.06738 -11.73882 -11.57560 -11.38500 -11.28278 -11.26597 -11.18245 -10.86075 -10.58480 -10.46292 -10.29131 -10.12959 -9.23164 -9.19035 -9.11410 -8.87999 -8.13453 -6.78406 -6.60723 -4.28149 1.64888 2.61790 2.94086 3.03398 3.07080 3.31567 3.53063 3.70531 3.75847 3.96733 4.03816 4.23609 4.35959 4.44394 4.60011 4.64874 4.82644 4.97790 5.00254 5.04934 5.23344 5.28332 5.33398 5.54035 5.58473 5.63440 5.70219 5.79711 5.95897 6.12646 6.19692 6.28631 6.35552 6.75444 6.88151 6.91684 7.15862 7.23932 7.25090 7.76247 7.86182 8.10323 8.17954 8.48273 8.69068 9.30715 9.59342 10.34999 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040598 B = 0.002195 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.525066 B =12750.605635 C =13097.052948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.134 4.134 4 C 0.090 3.910 5 H 0.074 0.926 6 O -0.547 6.547 7 C -0.185 4.185 8 C 0.136 3.864 9 H 0.121 0.879 10 N -0.696 5.696 11 C 0.516 3.484 12 O -0.527 6.527 13 C 0.483 3.517 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.078 4.078 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.381 0.619 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.413 0.587 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 3.658 -19.949 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.191 4.191 4 C 0.030 3.970 5 H 0.092 0.908 6 O -0.352 6.352 7 C -0.224 4.224 8 C 0.031 3.969 9 H 0.139 0.861 10 N -0.349 5.349 11 C 0.297 3.703 12 O -0.403 6.403 13 C 0.264 3.736 14 O -0.402 6.402 15 N -0.225 5.225 16 C -0.175 4.175 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.087 0.913 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.356 4.051 -18.722 20.182 hybrid contribution 0.940 -0.696 -0.122 1.176 sum 7.296 3.355 -18.844 20.484 Atomic orbital electron populations 1.21651 0.92005 1.02739 1.03199 1.22401 0.96043 0.95823 0.94066 1.21610 1.01853 0.93934 1.01694 1.22681 0.84458 0.94820 0.95072 0.90786 1.86448 1.28227 1.53974 1.66567 1.24142 1.03655 0.97763 0.96807 1.22672 0.95773 0.95374 0.83077 0.86090 1.45787 1.11859 1.67981 1.09308 1.20351 0.88214 0.77365 0.84349 1.90726 1.15109 1.50205 1.84281 1.19678 0.88177 0.81856 0.83937 1.90647 1.14493 1.51633 1.83384 1.42154 1.10292 1.62334 1.07766 1.17255 0.90804 1.22172 0.87292 1.24147 0.91968 1.06788 0.97350 1.78259 1.07604 1.23027 1.00244 1.44559 1.02489 1.35966 1.07467 1.19878 0.95808 1.47617 0.82114 0.86476 1.25667 0.94653 0.95761 1.01052 1.70196 0.98144 1.34563 1.36508 0.85870 0.78259 0.79615 0.80283 1.19083 1.20097 1.19093 1.21309 0.92956 1.17319 0.91325 0.91019 0.91327 0.91724 0.91055 0.92460 0.92434 0.77096 0.90176 0.88722 0.74879 0.75586 0.80559 0.91296 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.08 37.16 0.30 -0.67 16 2 C -0.08 -0.68 1.35 -153.56 -0.21 -0.89 16 3 C -0.13 -1.15 9.05 37.15 0.34 -0.81 16 4 C 0.09 0.63 4.70 -25.77 -0.12 0.51 16 5 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 6 O -0.55 -3.97 12.14 -35.23 -0.43 -4.40 16 7 C -0.18 -1.53 7.36 -25.92 -0.19 -1.72 16 8 C 0.14 1.41 3.60 -67.12 -0.24 1.17 16 9 H 0.12 1.49 7.46 -51.93 -0.39 1.10 16 10 N -0.70 -8.48 5.24 -53.49 -0.28 -8.76 16 11 C 0.52 7.99 7.88 -11.65 -0.09 7.89 16 12 O -0.53 -8.94 16.09 5.49 0.09 -8.85 16 13 C 0.48 8.82 7.85 -11.65 -0.09 8.72 16 14 O -0.52 -10.57 13.62 5.45 0.07 -10.50 16 15 N -0.58 -11.12 5.45 -10.45 -0.06 -11.18 16 16 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 17 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 19 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 20 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.31 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.17 11.81 55.50 0.66 -20.51 16 24 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 H 0.07 0.55 7.07 -51.93 -0.37 0.19 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 7.34 -51.93 -0.38 0.02 16 32 H 0.07 0.67 6.97 -51.92 -0.36 0.31 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.38 1.18 9.12 45.56 0.42 1.60 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.73 7.66 -51.93 -0.40 0.34 16 38 H 0.41 4.67 6.08 -40.82 -0.25 4.42 16 39 H 0.41 6.77 8.29 -40.82 -0.34 6.43 16 40 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 41 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -33.46 354.99 -5.31 -38.77 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -4.46 Total: 15.76 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.51 Total: 1.62 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.60 Total: -51.42 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.27 Total: -23.75 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.46 -5.31 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.506 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds