Wall clock time and date at job start Fri Apr 10 2020 18:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 112.90788 * 2 1 4 4 C 1.54052 * 113.61037 * 228.63350 * 2 1 3 5 5 H 1.09000 * 113.69997 * 25.48288 * 4 2 1 6 6 O 1.42901 * 113.61084 * 156.38281 * 4 2 1 7 7 C 1.53783 * 87.07848 * 270.92520 * 4 2 1 8 8 C 1.53781 * 113.61326 * 131.25187 * 2 1 3 9 9 H 1.09002 * 113.61445 * 203.66487 * 8 2 1 10 10 N 1.46497 * 113.61305 * 334.48194 * 8 2 1 11 11 C 1.34780 * 119.99653 * 203.46742 * 10 8 2 12 12 O 1.21360 * 120.00344 * 0.02562 * 11 10 8 13 13 C 1.49314 * 119.99593 * 179.97438 * 11 10 8 14 14 O 1.21402 * 120.00298 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99685 * 180.02562 * 13 11 10 16 16 C 1.40295 * 120.00063 * 180.02562 * 15 13 11 17 17 C 1.40727 * 126.09701 * 0.02562 * 16 15 13 18 18 N 1.30876 * 108.37378 * 179.97438 * 17 16 15 19 19 N 1.40060 * 108.43755 * 359.97438 * 18 17 16 20 20 C 1.37298 * 126.05623 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99947 * 179.97438 * 20 19 18 22 22 C 1.39005 * 119.99693 * 359.97217 * 20 19 18 23 23 N 1.31282 * 120.00573 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99835 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46957 * 60.00095 * 24 22 20 26 26 H 1.48498 * 109.47093 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46859 * 300.00149 * 24 22 20 28 28 C 1.35782 * 126.10115 * 179.71407 * 16 15 13 29 29 H 1.09003 * 109.46796 * 288.75111 * 1 2 3 30 30 H 1.09005 * 109.47091 * 48.74790 * 1 2 3 31 31 H 1.08995 * 109.46983 * 168.74709 * 1 2 3 32 32 H 1.09008 * 109.47535 * 191.25286 * 3 2 1 33 33 H 1.09000 * 109.47633 * 311.25098 * 3 2 1 34 34 H 1.09004 * 109.47511 * 71.25255 * 3 2 1 35 35 H 0.96707 * 113.99766 * 176.99621 * 6 4 2 36 36 H 1.08992 * 113.61796 * 220.02286 * 7 4 2 37 37 H 1.09005 * 113.68996 * 89.12897 * 7 4 2 38 38 H 0.96995 * 120.00146 * 23.47603 * 10 8 2 39 39 H 0.96999 * 120.00229 * 359.97438 * 15 13 11 40 40 H 1.08002 * 125.81198 * 359.97438 * 17 16 15 41 41 H 0.97003 * 120.00348 * 179.97438 * 23 22 20 42 42 H 1.07999 * 126.25538 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4092 0.0000 4 6 2.1470 -0.9329 -1.0594 5 1 1.4970 -1.1144 -1.9153 6 8 3.4756 -0.5682 -1.4390 7 6 2.0929 -2.0445 0.0019 8 6 2.1460 -0.9291 1.0593 9 1 3.1591 -0.6499 1.3490 10 7 1.2711 -1.1688 2.2097 11 6 1.7998 -1.5402 3.3925 12 8 3.0006 -1.6756 3.5048 13 6 0.9082 -1.7840 4.5651 14 8 -0.2930 -1.6481 4.4529 15 7 1.4369 -2.1549 5.7480 16 6 0.5991 -2.3844 6.8497 17 6 -0.8032 -2.2667 6.8637 18 7 -1.2299 -2.5601 8.0657 19 7 -0.1231 -2.8759 8.8638 20 6 -0.1584 -3.2375 10.1878 21 1 0.7594 -3.4617 10.7110 22 6 -1.3754 -3.3148 10.8549 23 7 -2.4912 -3.0427 10.2188 24 14 -1.4235 -3.8060 12.6566 25 1 -0.6374 -2.8324 13.4561 26 1 -2.8309 -3.8142 13.1301 27 1 -0.8403 -5.1624 12.8155 28 6 0.9960 -2.7656 8.0910 29 1 -0.3633 0.3304 0.9732 30 1 -0.3633 0.6776 -0.7726 31 1 -0.3633 -1.0079 -0.2005 32 1 3.1955 1.3517 -0.2005 33 1 1.6429 2.0078 -0.7726 34 1 1.9628 1.8726 0.9732 35 1 3.8853 -1.1763 -2.0696 36 1 2.9712 -2.6898 0.0035 37 1 1.1570 -2.6033 0.0035 38 1 0.3114 -1.0604 2.1200 39 1 2.3965 -2.2638 5.8376 40 1 -1.4219 -1.9827 6.0253 41 1 -3.3405 -3.0971 10.6843 42 1 2.0121 -2.9471 8.4090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320589812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:09 Heat of formation + Delta-G solvation = -36.173587 kcal Electronic energy + Delta-G solvation = -26636.159522 eV Core-core repulsion = 22618.248892 eV Total energy + Delta-G solvation = -4017.910630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -42.18333 -41.60037 -40.67317 -39.22061 -36.63395 -36.06695 -35.07980 -34.19576 -32.30377 -31.43443 -29.91866 -28.40129 -27.50731 -26.38656 -24.32384 -23.56102 -22.89355 -21.72492 -21.25365 -20.25460 -19.33164 -18.97925 -18.27251 -17.55127 -17.43503 -17.01904 -16.79219 -16.59952 -16.13985 -15.81528 -15.49829 -15.33842 -14.87737 -14.86942 -14.78087 -14.50028 -13.82881 -13.51404 -13.39290 -13.38780 -13.28807 -13.06966 -12.96092 -12.88929 -12.77276 -12.48413 -12.13380 -12.04068 -11.97495 -11.93855 -11.10605 -11.06123 -10.88500 -10.78441 -10.51645 -10.17902 -10.14603 -8.63578 -8.49188 -6.27131 0.25448 1.29251 1.30148 1.42014 1.57096 1.72140 2.02037 2.12135 2.51686 2.57573 2.92282 3.00382 3.07197 3.33361 3.50945 3.62379 3.72968 4.02029 4.19754 4.38743 4.46862 4.50166 4.51394 4.69240 4.74828 4.85254 4.93463 4.94484 4.96095 4.97551 5.07452 5.11648 5.20202 5.24610 5.29524 5.36436 5.50508 5.89419 6.00371 6.24199 6.46954 6.66355 6.78684 6.93143 7.04950 7.40330 7.61912 8.49792 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.040598 B = 0.002195 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.525066 B =12750.605635 C =13097.052948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.132 4.132 4 C 0.102 3.898 5 H 0.100 0.900 6 O -0.563 6.563 7 C -0.179 4.179 8 C 0.120 3.880 9 H 0.101 0.899 10 N -0.677 5.677 11 C 0.523 3.477 12 O -0.543 6.543 13 C 0.486 3.514 14 O -0.542 6.542 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.048 4.048 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.142 0.858 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.419 0.581 39 H 0.423 0.577 40 H 0.177 0.823 41 H 0.278 0.722 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 3.354 -20.977 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.190 4.190 4 C 0.042 3.958 5 H 0.118 0.882 6 O -0.372 6.372 7 C -0.218 4.218 8 C 0.016 3.984 9 H 0.119 0.881 10 N -0.330 5.330 11 C 0.304 3.696 12 O -0.420 6.420 13 C 0.267 3.733 14 O -0.420 6.420 15 N -0.227 5.227 16 C -0.163 4.163 17 C -0.223 4.223 18 N -0.139 5.139 19 N 0.070 4.930 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.177 1.177 28 C -0.227 4.227 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.258 0.742 39 H 0.260 0.740 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.572 3.752 -19.820 21.547 hybrid contribution 0.662 -0.534 -0.017 0.851 sum 8.234 3.218 -19.837 21.718 Atomic orbital electron populations 1.21678 0.90882 1.03834 1.03213 1.22452 0.96875 0.95311 0.93464 1.21587 1.01379 0.94453 1.01541 1.22614 0.84823 0.93042 0.95285 0.88197 1.86414 1.28479 1.54942 1.67348 1.24145 1.04064 0.97512 0.96062 1.22942 0.94707 0.97944 0.82811 0.88145 1.45817 1.12475 1.66041 1.08702 1.19770 0.87416 0.78086 0.84347 1.90729 1.15320 1.51525 1.84438 1.20275 0.88314 0.80282 0.84391 1.90637 1.15679 1.51878 1.83823 1.42094 1.10581 1.62918 1.07092 1.17296 0.90251 1.20393 0.88392 1.24260 0.93507 1.07666 0.96908 1.78155 1.09599 1.24666 1.01471 1.44839 1.02902 1.37143 1.08164 1.20620 0.97310 1.48270 0.82268 0.84115 1.26889 0.93774 0.94886 1.06172 1.70368 0.98990 1.36560 1.38892 0.84642 0.78239 0.79788 0.73495 1.17776 1.20172 1.17750 1.22001 0.93904 1.15735 0.91035 0.92044 0.89799 0.90643 0.92116 0.91144 0.93481 0.74974 0.90420 0.87765 0.74208 0.73966 0.80656 0.91201 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.08 71.98 0.58 -1.05 16 2 C -0.08 -1.17 1.35 -51.56 -0.07 -1.24 16 3 C -0.13 -2.11 9.05 71.98 0.65 -1.46 16 4 C 0.10 1.17 4.70 31.21 0.15 1.31 16 5 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 6 O -0.56 -6.93 12.14 -148.98 -1.81 -8.74 16 7 C -0.18 -2.58 7.36 31.12 0.23 -2.35 16 8 C 0.12 2.35 3.60 45.52 0.16 2.51 16 9 H 0.10 2.44 7.46 -2.39 -0.02 2.42 16 10 N -0.68 -15.86 5.24 -441.50 -2.31 -18.17 16 11 C 0.52 15.83 7.88 87.23 0.69 16.52 16 12 O -0.54 -17.97 16.09 -3.28 -0.05 -18.02 16 13 C 0.49 17.55 7.85 87.23 0.69 18.24 16 14 O -0.54 -21.94 13.62 -3.41 -0.05 -21.99 16 15 N -0.58 -21.86 5.45 -305.32 -1.66 -23.52 16 16 C -0.06 -2.65 6.90 37.82 0.26 -2.39 16 17 C -0.05 -2.56 10.85 85.44 0.93 -1.64 16 18 N -0.31 -18.25 10.39 -56.43 -0.59 -18.84 16 19 N -0.16 -8.98 3.73 -189.98 -0.71 -9.69 16 20 C -0.35 -18.57 10.25 84.02 0.86 -17.71 16 21 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 22 C 0.00 -0.26 5.50 84.96 0.47 0.21 16 23 N -0.82 -46.66 11.81 21.66 0.26 -46.41 16 24 Si 1.02 38.08 29.55 68.60 2.03 40.11 16 25 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 26 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 28 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 29 H 0.06 0.86 7.07 -2.39 -0.02 0.84 16 30 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.73 7.34 -2.39 -0.02 0.71 16 32 H 0.06 1.10 6.97 -2.38 -0.02 1.08 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.40 1.49 9.12 -74.05 -0.68 0.82 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.33 7.66 -2.38 -0.02 1.31 16 38 H 0.42 9.00 6.08 -92.71 -0.56 8.44 16 39 H 0.42 13.48 8.29 -92.71 -0.77 12.71 16 40 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 41 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -74.62 354.99 0.75 -73.87 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -0.91 Total: 43.03 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.55 Total: 8.37 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -5.01 Total: -116.62 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.91 Total: -48.76 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -74.62 0.75 -73.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.694 kcal (2) G-P(sol) polarization free energy of solvation -74.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds