Wall clock time and date at job start Fri Apr 10 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 112.85157 * 2 1 4 4 C 1.53774 * 113.61707 * 228.69004 * 2 1 3 5 5 H 1.09002 * 113.61861 * 105.47173 * 4 2 1 6 6 O 1.42901 * 113.61380 * 334.56929 * 4 2 1 7 7 C 1.53781 * 87.08466 * 220.02182 * 4 2 1 8 8 C 1.53782 * 113.61347 * 131.19026 * 2 1 3 9 9 H 1.08997 * 113.61553 * 254.61922 * 8 2 1 10 10 N 1.46505 * 113.61202 * 25.43525 * 8 2 1 11 11 C 1.34777 * 119.99724 * 205.00117 * 10 8 2 12 12 O 1.21363 * 120.00410 * 359.97438 * 11 10 8 13 13 C 1.49313 * 119.99573 * 180.02562 * 11 10 8 14 14 O 1.21403 * 120.00040 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99574 * 179.97438 * 13 11 10 16 16 C 1.40297 * 119.99494 * 179.72108 * 15 13 11 17 17 C 1.40719 * 126.10465 * 0.30689 * 16 15 13 18 18 N 1.30867 * 108.37702 * 179.97438 * 17 16 15 19 19 N 1.40064 * 108.43903 * 359.97438 * 18 17 16 20 20 C 1.37292 * 126.05590 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99855 * 179.97438 * 20 19 18 22 22 C 1.39005 * 120.00031 * 359.97338 * 20 19 18 23 23 N 1.31284 * 120.00540 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99966 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47259 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47104 * 120.00274 * 24 22 20 27 27 H 1.48501 * 109.47312 * 240.00034 * 24 22 20 28 28 C 1.35790 * 126.09768 * 179.97438 * 16 15 13 29 29 H 1.08994 * 109.47459 * 288.80635 * 1 2 3 30 30 H 1.09002 * 109.46913 * 48.80877 * 1 2 3 31 31 H 1.08999 * 109.46844 * 168.80526 * 1 2 3 32 32 H 1.08992 * 109.47373 * 191.19476 * 3 2 1 33 33 H 1.09001 * 109.46670 * 311.19493 * 3 2 1 34 34 H 1.09004 * 109.47215 * 71.18756 * 3 2 1 35 35 H 0.96697 * 114.00039 * 180.02562 * 6 4 2 36 36 H 1.09001 * 113.61292 * 270.88495 * 7 4 2 37 37 H 1.08998 * 113.62058 * 139.97467 * 7 4 2 38 38 H 0.97000 * 119.99792 * 24.99685 * 10 8 2 39 39 H 0.97001 * 120.00485 * 0.02562 * 15 13 11 40 40 H 1.08002 * 125.80845 * 0.02562 * 17 16 15 41 41 H 0.97001 * 120.00561 * 180.02562 * 23 22 20 42 42 H 1.08003 * 126.24905 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9301 -1.0583 5 1 2.5651 -0.4008 -1.9141 6 8 1.2919 -2.0114 -1.4370 7 6 3.1923 -1.3136 0.0014 8 6 2.1460 -0.9279 1.0603 9 1 2.5636 -0.3969 1.9157 10 7 1.2703 -2.0357 1.4507 11 6 1.4123 -2.6128 2.6603 12 8 2.2658 -2.2153 3.4261 13 6 0.5201 -3.7422 3.0579 14 8 -0.3334 -4.1402 2.2918 15 7 0.6624 -4.3197 4.2674 16 6 -0.1797 -5.3770 4.6432 17 6 -1.2060 -5.9380 3.8608 18 7 -1.7686 -6.9002 4.5466 19 7 -1.1273 -6.9926 5.7883 20 6 -1.4294 -7.8821 6.7896 21 1 -0.8684 -7.8674 7.7123 22 6 -2.4574 -8.8015 6.6157 23 7 -3.1391 -8.8197 5.4939 24 14 -2.8689 -10.0112 7.9783 25 1 -1.9608 -9.7856 9.1315 26 1 -4.2756 -9.8109 8.4100 27 1 -2.6978 -11.3985 7.4770 28 6 -0.1457 -6.0458 5.8245 29 1 -0.3634 0.3313 0.9727 30 1 -0.3633 0.6768 -0.7734 31 1 -0.3633 -1.0081 -0.1995 32 1 3.1942 1.3533 -0.1995 33 1 1.6415 2.0075 -0.7733 34 1 1.9599 1.8735 0.9728 35 1 1.6741 -2.6001 -2.1021 36 1 4.0711 -0.6687 0.0008 37 1 3.4443 -2.3741 0.0026 38 1 0.5883 -2.3537 0.8386 39 1 1.3441 -4.0014 4.8797 40 1 -1.4818 -5.6278 2.8637 41 1 -3.8567 -9.4610 5.3727 42 1 0.5330 -5.8604 6.6440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320589813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:20 Heat of formation + Delta-G solvation = -7.584972 kcal Electronic energy + Delta-G solvation = -26887.110636 eV Core-core repulsion = 22870.439701 eV Total energy + Delta-G solvation = -4016.670935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -41.13782 -40.07976 -39.17130 -37.73151 -35.59158 -34.52369 -33.43506 -32.99022 -30.72276 -30.30328 -28.08784 -27.60344 -25.93720 -24.83690 -23.43827 -22.70771 -21.01312 -20.24955 -19.47602 -19.08904 -18.08374 -17.47900 -17.17813 -16.39857 -15.65974 -15.57358 -15.47591 -15.23041 -15.07432 -14.88083 -14.21272 -13.89843 -13.65377 -13.36978 -13.12842 -13.01002 -12.96343 -12.75999 -12.53421 -12.40324 -12.18533 -11.72994 -11.54136 -11.29849 -11.29488 -11.17890 -11.15246 -10.81996 -10.52012 -10.41862 -10.26900 -9.96907 -9.22093 -9.15039 -9.07963 -8.85508 -8.11036 -6.75642 -6.59097 -4.26148 1.69385 2.60935 2.93480 3.04832 3.10613 3.34768 3.56886 3.73418 3.77044 3.96378 4.11208 4.37062 4.38696 4.47338 4.64773 4.68056 4.83551 4.99544 5.03983 5.05973 5.28670 5.31984 5.36325 5.49861 5.58698 5.62009 5.71304 5.75172 5.96711 6.18282 6.22039 6.37761 6.38396 6.78660 6.90862 6.95851 7.18012 7.29555 7.39016 7.80303 7.92487 8.14731 8.20651 8.51831 8.71928 9.33137 9.61840 10.36787 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.002337 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.129780 B =11978.986193 C =12336.467774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.126 4.126 4 C 0.086 3.914 5 H 0.069 0.931 6 O -0.546 6.546 7 C -0.186 4.186 8 C 0.133 3.867 9 H 0.105 0.895 10 N -0.679 5.679 11 C 0.516 3.484 12 O -0.532 6.532 13 C 0.484 3.516 14 O -0.520 6.520 15 N -0.584 5.584 16 C -0.068 4.068 17 C -0.027 4.027 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.078 4.078 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.384 0.616 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.420 0.580 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.275 0.725 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.842 16.059 -10.995 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 C -0.183 4.183 4 C 0.026 3.974 5 H 0.087 0.913 6 O -0.351 6.351 7 C -0.225 4.225 8 C 0.027 3.973 9 H 0.123 0.877 10 N -0.333 5.333 11 C 0.297 3.703 12 O -0.408 6.408 13 C 0.264 3.736 14 O -0.397 6.397 15 N -0.227 5.227 16 C -0.174 4.174 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.094 4.906 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.260 0.740 39 H 0.244 0.756 40 H 0.195 0.805 41 H 0.086 0.914 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.333 15.298 -10.663 20.853 hybrid contribution 1.033 -0.123 0.228 1.065 sum 10.366 15.175 -10.435 21.134 Atomic orbital electron populations 1.21575 0.92883 1.03105 1.01748 1.22353 0.97232 0.94629 0.94516 1.21558 1.00644 0.93195 1.02907 1.22847 0.90631 0.88597 0.95275 0.91272 1.86412 1.44229 1.41070 1.63435 1.24115 0.97869 1.03236 0.97295 1.21918 0.90895 0.87657 0.96870 0.87727 1.45422 1.37109 1.33984 1.16764 1.20331 0.84123 0.83584 0.82223 1.90714 1.34973 1.63526 1.51627 1.19642 0.85852 0.84735 0.83322 1.90662 1.34670 1.63181 1.51231 1.42145 1.33753 1.31466 1.15351 1.17259 1.02944 0.99576 0.97644 1.24152 0.97144 0.97740 1.01227 1.78256 1.19770 1.19827 0.91252 1.44567 1.17250 1.18528 1.10248 1.19964 1.18642 1.11767 0.94990 0.86409 1.25669 0.95521 0.98175 0.97801 1.70217 1.15857 1.30680 1.22650 0.85742 0.79017 0.79414 0.79856 1.18630 1.19876 1.19876 1.21305 1.02017 0.99920 0.99659 0.92364 0.92389 0.90956 0.91963 0.91629 0.91342 0.76818 0.88311 0.90151 0.74011 0.75627 0.80541 0.91421 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.43 37.16 0.31 -0.95 16 2 C -0.09 -0.71 1.34 -153.70 -0.21 -0.91 16 3 C -0.13 -0.75 9.07 37.16 0.34 -0.41 16 4 C 0.09 0.64 4.70 -25.92 -0.12 0.52 16 5 H 0.07 0.40 8.10 -51.93 -0.42 -0.03 16 6 O -0.55 -4.59 10.89 -35.23 -0.38 -4.97 16 7 C -0.19 -1.53 7.36 -25.92 -0.19 -1.72 16 8 C 0.13 1.38 3.78 -67.11 -0.25 1.13 16 9 H 0.10 1.16 7.42 -51.93 -0.39 0.78 16 10 N -0.68 -8.93 4.65 -53.49 -0.25 -9.18 16 11 C 0.52 8.26 7.88 -11.65 -0.09 8.17 16 12 O -0.53 -9.09 16.08 5.49 0.09 -9.00 16 13 C 0.48 9.12 7.85 -11.65 -0.09 9.03 16 14 O -0.52 -10.94 13.62 5.45 0.07 -10.87 16 15 N -0.58 -11.35 5.45 -10.45 -0.06 -11.41 16 16 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 17 C -0.03 -0.71 10.84 -17.03 -0.18 -0.89 16 18 N -0.26 -7.55 10.39 30.81 0.32 -7.23 16 19 N -0.14 -3.82 3.73 -11.40 -0.04 -3.86 16 20 C -0.32 -8.47 10.25 -14.82 -0.15 -8.62 16 21 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.32 11.81 55.50 0.66 -20.67 16 24 Si 0.94 18.83 29.55 -169.99 -5.02 13.81 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 C -0.08 -1.85 11.50 -16.38 -0.19 -2.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.79 5.68 -51.93 -0.29 0.50 16 32 H 0.06 0.30 7.35 -51.93 -0.38 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 1.81 9.12 45.56 0.42 2.22 16 36 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.42 5.67 5.57 -40.82 -0.23 5.44 16 39 H 0.41 6.86 8.29 -40.82 -0.34 6.53 16 40 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 41 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.15 2.97 8.06 -52.48 -0.42 2.54 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -33.61 352.89 -5.23 -38.83 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -4.42 Total: 17.03 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.50 Total: 2.19 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.63 Total: -52.34 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.22 Total: -24.84 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.61 -5.23 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.247 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds