Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 112.85157 * 2 1 4 4 C 1.53774 * 113.61707 * 228.69004 * 2 1 3 5 5 H 1.09002 * 113.61861 * 105.47173 * 4 2 1 6 6 O 1.42901 * 113.61380 * 334.56929 * 4 2 1 7 7 C 1.53781 * 87.08466 * 220.02182 * 4 2 1 8 8 C 1.53782 * 113.61347 * 131.19026 * 2 1 3 9 9 H 1.08997 * 113.61553 * 254.61922 * 8 2 1 10 10 N 1.46505 * 113.61202 * 25.43525 * 8 2 1 11 11 C 1.34777 * 119.99724 * 205.00117 * 10 8 2 12 12 O 1.21363 * 120.00410 * 359.97438 * 11 10 8 13 13 C 1.49313 * 119.99573 * 180.02562 * 11 10 8 14 14 O 1.21403 * 120.00040 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99574 * 179.97438 * 13 11 10 16 16 C 1.40297 * 119.99494 * 179.72108 * 15 13 11 17 17 C 1.40719 * 126.10465 * 0.30689 * 16 15 13 18 18 N 1.30867 * 108.37702 * 179.97438 * 17 16 15 19 19 N 1.40064 * 108.43903 * 359.97438 * 18 17 16 20 20 C 1.37292 * 126.05590 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99855 * 179.97438 * 20 19 18 22 22 C 1.39005 * 120.00031 * 359.97338 * 20 19 18 23 23 N 1.31284 * 120.00540 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99966 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47259 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47104 * 120.00274 * 24 22 20 27 27 H 1.48501 * 109.47312 * 240.00034 * 24 22 20 28 28 C 1.35790 * 126.09768 * 179.97438 * 16 15 13 29 29 H 1.08994 * 109.47459 * 288.80635 * 1 2 3 30 30 H 1.09002 * 109.46913 * 48.80877 * 1 2 3 31 31 H 1.08999 * 109.46844 * 168.80526 * 1 2 3 32 32 H 1.08992 * 109.47373 * 191.19476 * 3 2 1 33 33 H 1.09001 * 109.46670 * 311.19493 * 3 2 1 34 34 H 1.09004 * 109.47215 * 71.18756 * 3 2 1 35 35 H 0.96697 * 114.00039 * 180.02562 * 6 4 2 36 36 H 1.09001 * 113.61292 * 270.88495 * 7 4 2 37 37 H 1.08998 * 113.62058 * 139.97467 * 7 4 2 38 38 H 0.97000 * 119.99792 * 24.99685 * 10 8 2 39 39 H 0.97001 * 120.00485 * 0.02562 * 15 13 11 40 40 H 1.08002 * 125.80845 * 0.02562 * 17 16 15 41 41 H 0.97001 * 120.00561 * 180.02562 * 23 22 20 42 42 H 1.08003 * 126.24905 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9301 -1.0583 5 1 2.5651 -0.4008 -1.9141 6 8 1.2919 -2.0114 -1.4370 7 6 3.1923 -1.3136 0.0014 8 6 2.1460 -0.9279 1.0603 9 1 2.5636 -0.3969 1.9157 10 7 1.2703 -2.0357 1.4507 11 6 1.4123 -2.6128 2.6603 12 8 2.2658 -2.2153 3.4261 13 6 0.5201 -3.7422 3.0579 14 8 -0.3334 -4.1402 2.2918 15 7 0.6624 -4.3197 4.2674 16 6 -0.1797 -5.3770 4.6432 17 6 -1.2060 -5.9380 3.8608 18 7 -1.7686 -6.9002 4.5466 19 7 -1.1273 -6.9926 5.7883 20 6 -1.4294 -7.8821 6.7896 21 1 -0.8684 -7.8674 7.7123 22 6 -2.4574 -8.8015 6.6157 23 7 -3.1391 -8.8197 5.4939 24 14 -2.8689 -10.0112 7.9783 25 1 -1.9608 -9.7856 9.1315 26 1 -4.2756 -9.8109 8.4100 27 1 -2.6978 -11.3985 7.4770 28 6 -0.1457 -6.0458 5.8245 29 1 -0.3634 0.3313 0.9727 30 1 -0.3633 0.6768 -0.7734 31 1 -0.3633 -1.0081 -0.1995 32 1 3.1942 1.3533 -0.1995 33 1 1.6415 2.0075 -0.7733 34 1 1.9599 1.8735 0.9728 35 1 1.6741 -2.6001 -2.1021 36 1 4.0711 -0.6687 0.0008 37 1 3.4443 -2.3741 0.0026 38 1 0.5883 -2.3537 0.8386 39 1 1.3441 -4.0014 4.8797 40 1 -1.4818 -5.6278 2.8637 41 1 -3.8567 -9.4610 5.3727 42 1 0.5330 -5.8604 6.6440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320589813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = -34.295243 kcal Electronic energy + Delta-G solvation = -26888.268880 eV Core-core repulsion = 22870.439701 eV Total energy + Delta-G solvation = -4017.829179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.21692 -41.63411 -40.65543 -39.19241 -36.41679 -36.05974 -35.10727 -34.30286 -32.30965 -31.41714 -29.92439 -28.26257 -27.39186 -26.32948 -24.55529 -23.52039 -22.89737 -21.71118 -21.24081 -20.20007 -19.31182 -19.05395 -17.99054 -17.66500 -17.45491 -16.96935 -16.77963 -16.52469 -16.01703 -15.79721 -15.62226 -15.49425 -15.17687 -14.88262 -14.74489 -14.21783 -13.83869 -13.52837 -13.39800 -13.26306 -13.20442 -13.04163 -12.96611 -12.94547 -12.84027 -12.46067 -12.02733 -12.00725 -11.96594 -11.87923 -11.09358 -11.07382 -10.88712 -10.65059 -10.53612 -10.16842 -10.14896 -8.63821 -8.49609 -6.27458 0.25650 1.27711 1.27885 1.41875 1.60068 1.71119 2.01649 2.11114 2.51180 2.55540 2.89161 3.05318 3.06979 3.39475 3.50320 3.74046 3.76867 4.06902 4.22920 4.38549 4.48585 4.50975 4.60504 4.68744 4.80794 4.81226 4.93042 4.94835 4.97453 5.00469 5.09152 5.14494 5.20318 5.29146 5.31827 5.37501 5.51857 5.89970 6.03142 6.24434 6.47702 6.66296 6.80232 6.92580 7.05551 7.40442 7.61456 8.49855 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.002337 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.129780 B =11978.986193 C =12336.467774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.123 4.123 4 C 0.091 3.909 5 H 0.097 0.903 6 O -0.567 6.567 7 C -0.178 4.178 8 C 0.111 3.889 9 H 0.098 0.902 10 N -0.665 5.665 11 C 0.524 3.476 12 O -0.542 6.542 13 C 0.485 3.515 14 O -0.543 6.543 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.049 4.049 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.352 4.352 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.021 2.979 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.075 4.075 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.419 0.581 39 H 0.423 0.577 40 H 0.174 0.826 41 H 0.278 0.722 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.749 17.387 -10.729 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 C -0.180 4.180 4 C 0.032 3.968 5 H 0.115 0.885 6 O -0.376 6.376 7 C -0.216 4.216 8 C 0.006 3.994 9 H 0.116 0.884 10 N -0.317 5.317 11 C 0.304 3.696 12 O -0.420 6.420 13 C 0.266 3.734 14 O -0.421 6.421 15 N -0.226 5.226 16 C -0.163 4.163 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.483 4.483 21 H 0.160 0.840 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.226 4.226 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.249 0.751 36 H 0.142 0.858 37 H 0.085 0.915 38 H 0.258 0.742 39 H 0.261 0.739 40 H 0.191 0.809 41 H 0.088 0.912 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.288 16.676 -10.430 22.678 hybrid contribution 0.501 -0.390 0.020 0.635 sum 11.789 16.286 -10.410 22.640 Atomic orbital electron populations 1.21559 0.94060 1.02136 1.01627 1.22430 0.96313 0.95781 0.93686 1.21581 1.01680 0.91466 1.03282 1.22898 0.89825 0.88211 0.95889 0.88508 1.86382 1.45183 1.41818 1.64199 1.24136 0.98314 1.02953 0.96219 1.22329 0.91877 0.87391 0.97766 0.88357 1.45473 1.36958 1.33907 1.15398 1.19697 0.83660 0.83056 0.83195 1.90714 1.35316 1.63815 1.52152 1.20284 0.85553 0.84881 0.82635 1.90651 1.35685 1.63910 1.51848 1.42074 1.33711 1.30754 1.16097 1.17303 1.02235 0.99816 0.96956 1.24233 0.98460 0.98275 1.01490 1.78155 1.21620 1.21366 0.92741 1.44857 1.18256 1.19827 1.10122 1.20707 1.19656 1.12202 0.95728 0.84019 1.26907 0.94734 0.99813 1.00359 1.70384 1.16924 1.32138 1.25433 0.84514 0.78861 0.76038 0.76655 1.16365 1.19721 1.19693 1.22002 1.01398 0.98530 1.00642 0.93353 0.91037 0.92941 0.90257 0.90416 0.91610 0.75115 0.85768 0.91490 0.74157 0.73906 0.80899 0.91223 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.43 71.98 0.61 -1.81 16 2 C -0.08 -1.16 1.34 -51.66 -0.07 -1.23 16 3 C -0.12 -1.09 9.07 71.98 0.65 -0.44 16 4 C 0.09 1.12 4.70 31.12 0.15 1.27 16 5 H 0.10 0.72 8.10 -2.39 -0.02 0.70 16 6 O -0.57 -8.76 10.89 -148.98 -1.62 -10.38 16 7 C -0.18 -2.49 7.36 31.12 0.23 -2.26 16 8 C 0.11 2.15 3.78 45.52 0.17 2.32 16 9 H 0.10 2.05 7.42 -2.39 -0.02 2.03 16 10 N -0.66 -17.18 4.65 -441.49 -2.05 -19.23 16 11 C 0.52 16.55 7.88 87.23 0.69 17.23 16 12 O -0.54 -17.99 16.08 -3.29 -0.05 -18.04 16 13 C 0.48 18.35 7.85 87.23 0.69 19.03 16 14 O -0.54 -23.37 13.62 -3.41 -0.05 -23.41 16 15 N -0.58 -22.38 5.45 -305.32 -1.66 -24.04 16 16 C -0.06 -2.69 6.90 37.82 0.26 -2.43 16 17 C -0.05 -2.69 10.84 85.44 0.93 -1.76 16 18 N -0.31 -18.50 10.39 -56.44 -0.59 -19.09 16 19 N -0.16 -9.07 3.73 -189.98 -0.71 -9.78 16 20 C -0.35 -18.59 10.25 84.02 0.86 -17.73 16 21 H 0.14 6.50 7.83 -2.91 -0.02 6.48 16 22 C -0.01 -0.31 5.50 84.96 0.47 0.15 16 23 N -0.82 -47.12 11.81 21.66 0.26 -46.86 16 24 Si 1.02 38.40 29.55 68.60 2.03 40.42 16 25 H -0.24 -8.13 7.11 99.48 0.71 -7.42 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 28 C -0.07 -3.54 11.50 83.41 0.96 -2.58 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.14 5.68 -2.39 -0.01 1.13 16 32 H 0.08 0.46 7.35 -2.39 -0.02 0.44 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.40 3.18 9.12 -74.06 -0.68 2.50 16 36 H 0.12 1.13 7.66 -2.39 -0.02 1.11 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.42 11.32 5.57 -92.71 -0.52 10.80 16 39 H 0.42 13.72 8.29 -92.71 -0.77 12.95 16 40 H 0.17 9.33 5.92 -2.91 -0.02 9.31 16 41 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.19 7.09 8.06 -2.91 -0.02 7.07 16 Total: -1.00 -75.52 352.89 1.28 -74.24 By element: Atomic # 1 Polarization: 47.28 SS G_CDS: -0.86 Total: 46.42 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.59 Total: 9.75 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -4.76 Total: -119.00 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -1.72 Total: -51.84 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.42 kcal Total: -75.52 1.28 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.946 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds