Wall clock time and date at job start Fri Apr 10 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 112.84840 * 2 1 4 4 C 1.53782 * 113.61455 * 131.19172 * 2 1 3 5 5 H 1.08997 * 113.61363 * 25.35385 * 4 2 1 6 6 N 1.46502 * 113.61407 * 254.53299 * 4 2 1 7 7 C 1.34778 * 119.99807 * 156.52799 * 6 4 2 8 8 O 1.21371 * 120.00208 * 0.02562 * 7 6 4 9 9 C 1.49307 * 119.99852 * 180.02562 * 7 6 4 10 10 O 1.21400 * 120.00523 * 359.97438 * 9 7 6 11 11 N 1.34778 * 119.99850 * 180.02562 * 9 7 6 12 12 C 1.40292 * 120.00115 * 179.97438 * 11 9 7 13 13 C 1.40718 * 126.10097 * 0.04085 * 12 11 9 14 14 N 1.30874 * 108.38185 * 179.71874 * 13 12 11 15 15 N 1.40063 * 108.43048 * 0.38021 * 14 13 12 16 16 C 1.37295 * 126.05331 * 179.87478 * 15 14 13 17 17 H 1.08009 * 120.00055 * 179.41207 * 16 15 14 18 18 C 1.39006 * 120.00354 * 359.69292 * 16 15 14 19 19 N 1.31286 * 119.99622 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00375 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99872 * 20 18 16 23 23 H 1.48504 * 109.47102 * 240.00220 * 20 18 16 24 24 C 1.35791 * 126.10310 * 179.97438 * 12 11 9 25 25 C 1.53782 * 87.17282 * 139.94707 * 4 2 1 26 26 C 1.53777 * 113.62009 * 228.69478 * 2 1 3 27 27 H 1.08999 * 113.61169 * 334.64649 * 26 2 1 28 28 O 1.42895 * 113.61649 * 105.47070 * 26 2 1 29 29 H 1.08993 * 109.47604 * 288.80270 * 1 2 3 30 30 H 1.09005 * 109.46846 * 48.80928 * 1 2 3 31 31 H 1.09002 * 109.46800 * 168.80118 * 1 2 3 32 32 H 1.08999 * 109.47228 * 191.18947 * 3 2 1 33 33 H 1.09002 * 109.46803 * 311.19335 * 3 2 1 34 34 H 1.09005 * 109.46852 * 71.19147 * 3 2 1 35 35 H 0.97002 * 120.00604 * 336.52960 * 6 4 2 36 36 H 0.97002 * 120.00181 * 359.97438 * 11 9 7 37 37 H 1.08010 * 125.81106 * 359.96384 * 13 12 11 38 38 H 0.96996 * 119.99659 * 180.02562 * 19 18 16 39 39 H 1.08008 * 126.24759 * 0.03521 * 24 12 11 40 40 H 1.08995 * 113.62070 * 89.15906 * 25 4 2 41 41 H 1.09000 * 113.61232 * 220.06390 * 25 4 2 42 42 H 0.96705 * 113.99867 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 1.4940 -1.7513 1.3518 6 7 2.7091 -0.2141 2.2091 7 6 2.8457 -0.8438 3.3928 8 8 2.5027 -2.0025 3.5070 9 6 3.4191 -0.1162 4.5637 10 8 3.7626 1.0426 4.4495 11 7 3.5562 -0.7461 5.7473 12 6 4.0954 -0.0625 6.8474 13 6 4.5321 1.2751 6.8596 14 7 4.9643 1.5572 8.0623 15 7 4.8299 0.4143 8.8605 16 6 5.1765 0.3082 10.1848 17 1 5.0211 -0.6222 10.7109 18 6 5.7219 1.4000 10.8501 19 7 5.9061 2.5325 10.2120 20 14 6.1928 1.2560 12.6520 21 1 5.8864 -0.1142 13.1357 22 1 7.6454 1.5228 12.8070 23 1 5.4203 2.2449 13.4461 24 6 4.2878 -0.5733 8.0908 25 6 3.1929 -1.3158 0.0027 26 6 2.1461 -0.9300 -1.0584 27 1 1.4941 -1.7540 -1.3482 28 8 2.6955 -0.2359 -2.1802 29 1 -0.3634 0.3312 0.9727 30 1 -0.3633 0.6768 -0.7734 31 1 -0.3633 -1.0081 -0.1996 32 1 3.1942 1.3534 -0.1994 33 1 1.6414 2.0076 -0.7733 34 1 1.9598 1.8735 0.9729 35 1 2.9836 0.7118 2.1178 36 1 3.2820 -1.6720 5.8386 37 1 4.5102 1.9547 6.0204 38 1 6.2871 3.2942 10.6762 39 1 4.0545 -1.5778 8.4117 40 1 4.0725 -0.6722 0.0024 41 1 3.4433 -2.3766 0.0048 42 1 3.0842 -0.8157 -2.8495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320589815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:26 Heat of formation + Delta-G solvation = -37.781970 kcal Electronic energy + Delta-G solvation = -26605.947933 eV Core-core repulsion = 22587.967557 eV Total energy + Delta-G solvation = -4017.980375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17901 -41.58841 -40.65213 -39.21475 -36.63611 -36.08351 -35.08558 -34.21620 -32.30482 -31.50865 -29.91890 -28.45548 -27.48123 -26.32869 -24.22969 -23.56562 -22.89030 -21.70928 -21.25033 -20.26030 -19.31468 -18.87233 -18.55299 -17.59466 -17.45136 -16.96572 -16.79223 -16.46577 -15.97517 -15.77869 -15.62912 -15.36389 -15.11834 -14.87380 -14.71415 -14.27292 -13.86967 -13.58092 -13.52462 -13.39144 -13.25555 -13.05405 -12.94773 -12.94281 -12.64305 -12.47262 -12.10426 -12.02765 -11.99968 -11.75504 -11.37018 -11.09103 -10.88194 -10.71548 -10.54557 -10.19666 -10.14921 -8.63293 -8.49552 -6.27240 0.25370 1.27895 1.28251 1.42016 1.60032 1.71276 2.01860 2.11175 2.51716 2.55799 2.90560 3.07162 3.24982 3.27721 3.49007 3.62377 3.74506 3.90607 4.20936 4.38925 4.43327 4.47733 4.51631 4.60111 4.76000 4.89794 4.92489 4.94643 4.96647 4.97928 5.01731 5.09888 5.20449 5.25567 5.29825 5.35657 5.45798 5.89860 5.99948 6.23663 6.45917 6.66213 6.77121 6.95680 7.05577 7.40733 7.62004 8.49893 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038664 B = 0.002188 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.008783 B =12792.432472 C =13079.599753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.127 4.127 4 C 0.119 3.881 5 H 0.121 0.879 6 N -0.677 5.677 7 C 0.527 3.473 8 O -0.538 6.538 9 C 0.484 3.516 10 O -0.544 6.544 11 N -0.581 5.581 12 C -0.057 4.057 13 C -0.049 4.049 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.352 4.352 17 H 0.142 0.858 18 C -0.006 4.006 19 N -0.821 5.821 20 Si 1.020 2.980 21 H -0.241 1.241 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.074 4.074 25 C -0.179 4.179 26 C 0.101 3.899 27 H 0.109 0.891 28 O -0.567 6.567 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.424 0.576 37 H 0.175 0.825 38 H 0.278 0.722 39 H 0.189 0.811 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -9.208 -20.064 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.184 4.184 4 C 0.015 3.985 5 H 0.139 0.861 6 N -0.330 5.330 7 C 0.307 3.693 8 O -0.415 6.415 9 C 0.266 3.734 10 O -0.422 6.422 11 N -0.226 5.226 12 C -0.163 4.163 13 C -0.224 4.224 14 N -0.140 5.140 15 N 0.069 4.931 16 C -0.483 4.483 17 H 0.160 0.840 18 C -0.218 4.218 19 N -0.449 5.449 20 Si 0.839 3.161 21 H -0.164 1.164 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.225 4.225 25 C -0.218 4.218 26 C 0.041 3.959 27 H 0.127 0.873 28 O -0.375 6.375 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.261 0.739 37 H 0.192 0.808 38 H 0.088 0.912 39 H 0.206 0.794 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.031 -7.589 -18.983 21.965 hybrid contribution 0.223 -0.757 -0.058 0.791 sum -7.808 -8.345 -19.041 22.207 Atomic orbital electron populations 1.21778 0.92244 1.03163 1.02298 1.22423 0.96764 0.95775 0.93215 1.21420 1.01192 0.94092 1.01728 1.22712 0.96780 0.96213 0.82819 0.86099 1.45731 1.61502 1.17076 1.08710 1.19684 0.79136 0.86327 0.84146 1.90726 1.49703 1.16725 1.84363 1.20309 0.81623 0.87013 0.84458 1.90648 1.50210 1.17574 1.83793 1.42079 1.57874 1.15574 1.07066 1.17291 1.16734 0.93881 0.88396 1.24251 1.05469 0.95857 0.96858 1.78161 1.26664 1.07661 1.01465 1.44854 1.34076 1.05909 1.08276 1.20701 1.43247 1.02148 0.82197 0.84036 1.26899 0.94971 0.93759 1.06182 1.70384 1.33458 1.02268 1.38776 0.84520 0.78004 0.80155 0.73434 1.16369 1.19720 1.19743 1.22012 1.12329 0.97190 0.91006 1.24167 0.98659 1.02968 0.96038 1.23228 0.94023 0.94161 0.84495 0.87308 1.86484 1.79255 1.38414 1.33336 0.92680 0.91429 0.90843 0.92217 0.91180 0.92660 0.74434 0.73861 0.80800 0.91243 0.79424 0.89540 0.89671 0.75410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 2 C -0.08 -1.18 1.35 -51.65 -0.07 -1.25 16 3 C -0.13 -2.09 7.45 71.98 0.54 -1.56 16 4 C 0.12 2.09 3.67 45.52 0.17 2.26 16 5 H 0.12 2.18 7.46 -2.39 -0.02 2.16 16 6 N -0.68 -15.66 5.23 -441.50 -2.31 -17.97 16 7 C 0.53 15.35 7.88 87.22 0.69 16.04 16 8 O -0.54 -16.59 16.09 -3.31 -0.05 -16.64 16 9 C 0.48 17.35 7.85 87.22 0.69 18.04 16 10 O -0.54 -22.26 13.62 -3.40 -0.05 -22.31 16 11 N -0.58 -21.49 5.45 -305.33 -1.66 -23.15 16 12 C -0.06 -2.62 6.90 37.82 0.26 -2.36 16 13 C -0.05 -2.62 10.84 85.44 0.93 -1.69 16 14 N -0.31 -18.32 10.39 -56.43 -0.59 -18.91 16 15 N -0.16 -8.99 3.73 -189.97 -0.71 -9.70 16 16 C -0.35 -18.43 10.25 84.02 0.86 -17.57 16 17 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 18 C -0.01 -0.31 5.50 84.96 0.47 0.16 16 19 N -0.82 -46.81 11.81 21.66 0.26 -46.55 16 20 Si 1.02 38.13 29.55 68.60 2.03 40.16 16 21 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 24 C -0.07 -3.46 11.50 83.41 0.96 -2.50 16 25 C -0.18 -2.62 7.38 31.18 0.23 -2.39 16 26 C 0.10 1.15 4.63 31.18 0.14 1.30 16 27 H 0.11 0.79 7.96 -2.39 -0.02 0.77 16 28 O -0.57 -6.83 12.77 -148.98 -1.90 -8.74 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.71 7.94 -2.39 -0.02 0.70 16 32 H 0.06 1.05 7.20 -2.39 -0.02 1.04 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 0.96 7.07 -2.38 -0.02 0.94 16 35 H 0.42 9.54 6.09 -92.71 -0.56 8.98 16 36 H 0.42 13.10 8.29 -92.71 -0.77 12.33 16 37 H 0.18 9.16 5.92 -2.91 -0.02 9.14 16 38 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 40 H 0.09 1.47 7.67 -2.39 -0.02 1.45 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.40 1.46 9.12 -74.05 -0.68 0.79 16 Total: -1.00 -73.94 355.84 0.62 -73.32 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.91 Total: 43.09 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.52 Total: 7.40 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.01 Total: -116.28 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.00 Total: -47.68 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -73.94 0.62 -73.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320589815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.535 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds