Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74328 * 179.89415 * 3 2 1 5 5 C 1.29841 * 109.47320 * 0.43011 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85035 * 359.86786 * 6 2 1 8 8 C 1.53321 * 108.72868 * 197.06079 * 7 6 2 9 9 H 1.08997 * 109.45590 * 69.76415 * 8 7 6 10 10 C 1.50699 * 109.42767 * 189.70210 * 8 7 6 11 11 O 1.20826 * 120.00226 * 0.10366 * 10 8 7 12 12 O 1.34229 * 119.99983 * 180.10624 * 10 8 7 13 13 C 1.45199 * 116.99946 * 180.02562 * 12 10 8 14 14 C 1.50706 * 109.47064 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99947 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00181 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00094 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46944 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00264 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99412 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99486 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00282 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47148 * 90.00738 * 22 20 18 24 24 H 1.48509 * 109.47057 * 210.00460 * 22 20 18 25 25 H 1.48493 * 109.47245 * 330.00127 * 22 20 18 26 26 C 1.53140 * 109.58602 * 309.72413 * 8 7 6 27 27 C 1.50792 * 128.51882 * 179.61112 * 5 4 3 28 28 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 31 31 H 1.09006 * 109.58678 * 316.82208 * 7 6 2 32 32 H 1.08999 * 109.59429 * 77.27308 * 7 6 2 33 33 H 1.08994 * 109.47156 * 299.99340 * 13 12 10 34 34 H 1.09003 * 109.47643 * 59.99548 * 13 12 10 35 35 H 0.97008 * 119.99893 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.46785 * 299.99891 * 17 16 14 37 37 H 1.08991 * 109.47301 * 60.00164 * 17 16 14 38 38 H 0.96993 * 119.99508 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.49827 * 309.49268 * 26 8 7 40 40 H 1.08995 * 109.49885 * 189.39244 * 26 8 7 41 41 H 1.09001 * 109.73227 * 315.62992 * 27 5 4 42 42 H 1.09004 * 109.73586 * 76.27061 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0022 5 6 3.5816 -0.6156 -0.0054 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0109 8 6 3.1554 -3.3279 0.4094 9 1 3.3630 -3.1586 1.4660 10 6 2.8688 -4.7899 0.1824 11 8 1.8025 -5.1333 -0.2703 12 8 3.7982 -5.7106 0.4830 13 6 3.4535 -7.0996 0.2377 14 6 4.6105 -7.9813 0.6317 15 8 5.6257 -7.4876 1.0751 16 7 4.5170 -9.3184 0.4913 17 6 5.6415 -10.1756 0.8749 18 6 5.2838 -11.6173 0.6202 19 1 4.3156 -11.8698 0.2137 20 6 6.1923 -12.6139 0.9071 21 7 5.8800 -13.8721 0.6853 22 14 7.8667 -12.1772 1.6108 23 1 7.7915 -12.1614 3.0937 24 1 8.8649 -13.1874 1.1765 25 1 8.2747 -10.8359 1.1214 26 6 4.3718 -2.9114 -0.4225 27 6 4.8051 -1.4970 -0.0143 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.1209 -2.6645 0.6926 32 1 1.6233 -2.7902 -1.0132 33 1 2.5763 -7.3658 0.8272 34 1 3.2355 -7.2384 -0.8213 35 1 3.7051 -9.7133 0.1364 36 1 6.5187 -9.9096 0.2851 37 1 5.8596 -10.0366 1.9336 38 1 6.5193 -14.5732 0.8868 39 1 4.1094 -2.9205 -1.4804 40 1 5.1904 -3.6085 -0.2442 41 1 5.5301 -1.1128 -0.7319 42 1 5.2492 -1.5202 0.9808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322895740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = -48.425569 kcal Electronic energy + Delta-G solvation = -26242.050841 eV Core-core repulsion = 22223.608925 eV Total energy + Delta-G solvation = -4018.441916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.72582 -41.15449 -39.14703 -37.71888 -36.66153 -34.58973 -34.49582 -32.52978 -32.20353 -31.05440 -29.66829 -27.78442 -27.42886 -25.61459 -23.80455 -22.40712 -21.90706 -21.32128 -20.28453 -20.03593 -18.44801 -17.78550 -17.14927 -17.09535 -16.89494 -16.47945 -15.76879 -15.57580 -15.28902 -15.13122 -14.68740 -14.50687 -14.40264 -14.19789 -13.60336 -13.44408 -13.31947 -13.12580 -12.92537 -12.77235 -12.51241 -12.45926 -12.22589 -11.99636 -11.80692 -11.59149 -11.15666 -11.06216 -10.96302 -10.85646 -10.67822 -10.54179 -10.07407 -9.63207 -9.49820 -9.34082 -8.89714 -8.38988 -6.31264 -4.34987 1.39674 1.63747 1.68058 2.23702 2.50235 2.87259 3.19425 3.26641 3.33511 3.46581 3.56441 3.72179 3.91593 3.97357 4.11228 4.24111 4.33805 4.44024 4.53973 4.63121 4.70335 4.86558 4.91921 4.95591 4.96890 5.04080 5.05773 5.10607 5.24523 5.33136 5.38913 5.46909 5.54010 5.80146 5.93645 6.41929 6.62642 6.91193 6.95957 7.20025 7.22956 7.93848 8.30951 8.38121 8.56034 8.69583 9.27304 10.80406 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.002052 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.842798 B =13639.034219 C =14311.270997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.181 3.819 3 N -0.299 5.299 4 N -0.288 5.288 5 C 0.174 3.826 6 N -0.471 5.471 7 C 0.121 3.879 8 C -0.094 4.094 9 H 0.127 0.873 10 C 0.475 3.525 11 O -0.504 6.504 12 O -0.322 6.322 13 C 0.049 3.951 14 C 0.501 3.499 15 O -0.536 6.536 16 N -0.698 5.698 17 C 0.222 3.778 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.889 5.889 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.261 1.261 26 C -0.122 4.122 27 C -0.031 4.031 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.399 0.601 36 H 0.029 0.971 37 H 0.024 0.976 38 H 0.269 0.731 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 23.301 -2.143 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 N -0.139 5.139 4 N -0.127 5.127 5 C -0.094 4.094 6 N -0.163 5.163 7 C -0.003 4.003 8 C -0.114 4.114 9 H 0.144 0.856 10 C 0.316 3.684 11 O -0.392 6.392 12 O -0.236 6.236 13 C -0.028 4.028 14 C 0.284 3.716 15 O -0.413 6.413 16 N -0.348 5.348 17 C 0.101 3.899 18 C -0.586 4.586 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.526 5.526 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.160 4.160 27 C -0.070 4.070 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.260 24.740 -1.941 26.487 hybrid contribution -0.188 -1.729 0.179 1.749 sum -9.447 23.011 -1.762 24.937 Atomic orbital electron populations 1.20247 0.83539 1.04753 1.04202 1.24704 0.97141 0.82556 1.04237 1.74509 0.96132 1.23579 1.19689 1.74075 1.12231 1.07957 1.18455 1.24802 0.86996 0.92666 1.04894 1.45927 1.07162 1.08102 1.55136 1.21786 0.97148 0.75863 1.05454 1.21255 0.97068 0.88004 1.05055 0.85556 1.23021 0.82098 0.88710 0.74525 1.90715 1.25127 1.82238 1.41146 1.86523 1.43592 1.16670 1.76815 1.22916 0.98429 0.77790 1.03707 1.19874 0.88106 0.83463 0.80124 1.90713 1.31066 1.74280 1.45266 1.46082 1.20429 1.04629 1.63685 1.19571 0.85011 0.89643 0.95693 1.21052 1.03829 0.88096 1.45623 0.90120 1.24798 0.98596 0.94669 0.94519 1.69874 1.36193 0.99410 1.47129 0.86810 0.83689 0.79116 0.80040 1.19768 1.20787 1.18484 1.21796 0.97065 0.97203 0.99937 1.20247 0.91164 0.90469 1.05162 0.89444 0.90245 0.88511 0.87498 0.87669 0.88042 0.88027 0.76664 0.95361 0.95826 0.92120 0.90049 0.87231 0.87242 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.29 36.01 0.37 0.03 16 2 C 0.18 1.68 8.07 -155.45 -1.25 0.43 16 3 N -0.30 -3.82 12.23 32.70 0.40 -3.42 16 4 N -0.29 -3.74 12.21 32.76 0.40 -3.34 16 5 C 0.17 1.69 7.75 -155.30 -1.20 0.48 16 6 N -0.47 -3.95 3.11 -110.86 -0.35 -4.30 16 7 C 0.12 0.74 5.46 -4.01 -0.02 0.72 16 8 C -0.09 -0.62 2.64 -91.53 -0.24 -0.86 16 9 H 0.13 0.71 8.12 -51.93 -0.42 0.28 16 10 C 0.47 4.48 7.25 36.01 0.26 4.74 16 11 O -0.50 -5.53 15.57 -18.75 -0.29 -5.83 16 12 O -0.32 -3.83 9.49 -45.90 -0.44 -4.27 16 13 C 0.05 0.59 5.94 36.01 0.21 0.80 16 14 C 0.50 8.55 7.91 -10.99 -0.09 8.46 16 15 O -0.54 -11.26 16.50 -14.11 -0.23 -11.49 16 16 N -0.70 -12.74 5.55 -61.47 -0.34 -13.09 16 17 C 0.22 5.11 4.50 -5.19 -0.02 5.09 16 18 C -0.55 -14.29 9.83 -34.44 -0.34 -14.63 16 19 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 20 C 0.08 2.13 5.47 -17.81 -0.10 2.04 16 21 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 22 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 26 C -0.12 -0.73 5.24 -26.42 -0.14 -0.87 16 27 C -0.03 -0.20 6.33 -27.60 -0.17 -0.37 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.26 8.04 -51.93 -0.42 -0.16 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.63 7.79 -51.93 -0.40 0.22 16 33 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.10 1.04 8.13 -51.93 -0.42 0.61 16 35 H 0.40 6.22 8.32 -40.82 -0.34 5.88 16 36 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 37 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.48 8.12 -51.93 -0.42 0.05 16 40 H 0.11 0.69 7.89 -51.93 -0.41 0.28 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -35.80 359.69 -7.77 -43.57 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.72 Total: -0.44 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.73 Total: 6.06 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.89 Total: -48.90 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.96 Total: -21.59 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.80 -7.77 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322895740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.855 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds