Wall clock time and date at job start Fri Apr 10 2020 18:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74328 * 179.89415 * 3 2 1 5 5 C 1.29841 * 109.47320 * 0.43011 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85035 * 359.86786 * 6 2 1 8 8 C 1.53321 * 108.72868 * 197.06079 * 7 6 2 9 9 H 1.08997 * 109.45590 * 69.76415 * 8 7 6 10 10 C 1.50699 * 109.42767 * 189.70210 * 8 7 6 11 11 O 1.20826 * 120.00226 * 0.10366 * 10 8 7 12 12 O 1.34229 * 119.99983 * 180.10624 * 10 8 7 13 13 C 1.45199 * 116.99946 * 180.02562 * 12 10 8 14 14 C 1.50706 * 109.47064 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99947 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00181 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00094 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46944 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00264 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99412 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99486 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00282 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47148 * 90.00738 * 22 20 18 24 24 H 1.48509 * 109.47057 * 210.00460 * 22 20 18 25 25 H 1.48493 * 109.47245 * 330.00127 * 22 20 18 26 26 C 1.53140 * 109.58602 * 309.72413 * 8 7 6 27 27 C 1.50792 * 128.51882 * 179.61112 * 5 4 3 28 28 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 31 31 H 1.09006 * 109.58678 * 316.82208 * 7 6 2 32 32 H 1.08999 * 109.59429 * 77.27308 * 7 6 2 33 33 H 1.08994 * 109.47156 * 299.99340 * 13 12 10 34 34 H 1.09003 * 109.47643 * 59.99548 * 13 12 10 35 35 H 0.97008 * 119.99893 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.46785 * 299.99891 * 17 16 14 37 37 H 1.08991 * 109.47301 * 60.00164 * 17 16 14 38 38 H 0.96993 * 119.99508 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.49827 * 309.49268 * 26 8 7 40 40 H 1.08995 * 109.49885 * 189.39244 * 26 8 7 41 41 H 1.09001 * 109.73227 * 315.62992 * 27 5 4 42 42 H 1.09004 * 109.73586 * 76.27061 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0022 5 6 3.5816 -0.6156 -0.0054 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0109 8 6 3.1554 -3.3279 0.4094 9 1 3.3630 -3.1586 1.4660 10 6 2.8688 -4.7899 0.1824 11 8 1.8025 -5.1333 -0.2703 12 8 3.7982 -5.7106 0.4830 13 6 3.4535 -7.0996 0.2377 14 6 4.6105 -7.9813 0.6317 15 8 5.6257 -7.4876 1.0751 16 7 4.5170 -9.3184 0.4913 17 6 5.6415 -10.1756 0.8749 18 6 5.2838 -11.6173 0.6202 19 1 4.3156 -11.8698 0.2137 20 6 6.1923 -12.6139 0.9071 21 7 5.8800 -13.8721 0.6853 22 14 7.8667 -12.1772 1.6108 23 1 7.7915 -12.1614 3.0937 24 1 8.8649 -13.1874 1.1765 25 1 8.2747 -10.8359 1.1214 26 6 4.3718 -2.9114 -0.4225 27 6 4.8051 -1.4970 -0.0143 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.1209 -2.6645 0.6926 32 1 1.6233 -2.7902 -1.0132 33 1 2.5763 -7.3658 0.8272 34 1 3.2355 -7.2384 -0.8213 35 1 3.7051 -9.7133 0.1364 36 1 6.5187 -9.9096 0.2851 37 1 5.8596 -10.0366 1.9336 38 1 6.5193 -14.5732 0.8868 39 1 4.1094 -2.9205 -1.4804 40 1 5.1904 -3.6085 -0.2442 41 1 5.5301 -1.1128 -0.7319 42 1 5.2492 -1.5202 0.9808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322895740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:50 Heat of formation + Delta-G solvation = -72.041717 kcal Electronic energy + Delta-G solvation = -26243.074914 eV Core-core repulsion = 22223.608925 eV Total energy + Delta-G solvation = -4019.465989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.41490 -41.96961 -40.49477 -38.44379 -37.48607 -36.19226 -35.19123 -34.45521 -32.84768 -31.60062 -31.04178 -28.91424 -28.36107 -26.31923 -24.46672 -24.06462 -22.65752 -22.07536 -21.71359 -20.65956 -19.40443 -19.10374 -18.22985 -17.89374 -17.67390 -17.60920 -16.91955 -16.79711 -16.39817 -16.02119 -15.88046 -15.38279 -15.12052 -14.97687 -14.80930 -14.51187 -14.35734 -14.01615 -13.90270 -13.73441 -13.48943 -13.30568 -13.17046 -13.07516 -12.70702 -12.67541 -12.35619 -12.13319 -11.93721 -11.92597 -11.71946 -11.65572 -11.38965 -11.17392 -10.95836 -10.91871 -10.05987 -10.02698 -8.39667 -6.47243 0.75169 0.91763 0.94470 1.34362 1.37449 1.48330 1.53045 1.53706 1.74838 2.28471 2.43442 2.93549 2.95984 3.15603 3.31720 3.43035 3.52484 3.65354 3.80853 3.91027 4.02284 4.06744 4.10860 4.18767 4.24927 4.46579 4.60783 4.65105 4.75840 4.81787 4.86107 4.92377 4.95829 4.99599 5.01751 5.15073 5.21204 5.25000 5.41145 5.83573 6.05706 6.42885 6.53598 6.73027 7.12550 7.28511 7.64669 8.74764 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.002052 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.842798 B =13639.034219 C =14311.270997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.185 3.815 3 N -0.348 5.348 4 N -0.335 5.335 5 C 0.174 3.826 6 N -0.470 5.470 7 C 0.122 3.878 8 C -0.088 4.088 9 H 0.140 0.860 10 C 0.483 3.517 11 O -0.517 6.517 12 O -0.338 6.338 13 C 0.059 3.941 14 C 0.503 3.497 15 O -0.577 6.577 16 N -0.698 5.698 17 C 0.232 3.768 18 C -0.548 4.548 19 H 0.062 0.938 20 C 0.025 3.975 21 N -0.931 5.931 22 Si 0.937 3.063 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.257 1.257 26 C -0.116 4.116 27 C -0.027 4.027 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.018 0.982 37 H 0.016 0.984 38 H 0.272 0.728 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 23.938 -1.984 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 N -0.187 5.187 4 N -0.173 5.173 5 C -0.095 4.095 6 N -0.162 5.162 7 C 0.000 4.000 8 C -0.107 4.107 9 H 0.158 0.842 10 C 0.325 3.675 11 O -0.406 6.406 12 O -0.253 6.253 13 C -0.018 4.018 14 C 0.289 3.711 15 O -0.457 6.457 16 N -0.349 5.349 17 C 0.109 3.891 18 C -0.586 4.586 19 H 0.080 0.920 20 C -0.175 4.175 21 N -0.569 5.569 22 Si 0.761 3.239 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.181 1.181 26 C -0.154 4.154 27 C -0.066 4.066 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.249 0.751 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.039 25.396 -1.796 27.367 hybrid contribution -0.050 -1.918 0.098 1.921 sum -10.090 23.478 -1.698 25.610 Atomic orbital electron populations 1.20464 0.80653 1.05967 1.05561 1.25428 0.98627 0.82068 1.02195 1.74405 0.96657 1.25598 1.22084 1.73963 1.12882 1.09891 1.20570 1.25309 0.88375 0.92257 1.03512 1.46050 1.06627 1.08778 1.54716 1.21936 0.97363 0.74393 1.06350 1.21283 0.97443 0.86012 1.05982 0.84245 1.23371 0.81376 0.89033 0.73691 1.90716 1.25567 1.82483 1.41791 1.86516 1.44743 1.16652 1.77353 1.22770 0.96120 0.77458 1.05424 1.20610 0.88872 0.83060 0.78528 1.90692 1.33172 1.74878 1.46935 1.45870 1.19829 1.05174 1.64074 1.19157 0.86263 0.88653 0.95025 1.21291 1.02988 0.89797 1.44512 0.92029 1.25614 1.02269 0.94584 0.95057 1.69983 1.37681 1.00477 1.48803 0.85860 0.79524 0.78971 0.79567 1.19030 1.20130 1.18093 1.21752 0.96861 0.96754 1.00004 1.20374 0.90118 0.89955 1.06181 0.87880 0.88102 0.88192 0.85656 0.87158 0.85603 0.85594 0.75088 0.96434 0.96580 0.91871 0.89790 0.87184 0.86427 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.29 71.24 0.73 0.21 16 2 C 0.19 3.23 8.07 138.14 1.11 4.34 16 3 N -0.35 -8.96 12.23 -50.46 -0.62 -9.58 16 4 N -0.33 -8.77 12.21 -50.28 -0.61 -9.38 16 5 C 0.17 3.21 7.75 138.13 1.07 4.28 16 6 N -0.47 -7.05 3.11 -504.65 -1.57 -8.63 16 7 C 0.12 1.14 5.46 86.53 0.47 1.62 16 8 C -0.09 -0.91 2.64 -11.39 -0.03 -0.94 16 9 H 0.14 1.14 8.12 -2.39 -0.02 1.12 16 10 C 0.48 7.63 7.25 71.24 0.52 8.15 16 11 O -0.52 -9.63 15.57 21.96 0.34 -9.28 16 12 O -0.34 -7.11 9.49 -45.06 -0.43 -7.54 16 13 C 0.06 1.25 5.94 71.24 0.42 1.67 16 14 C 0.50 16.27 7.91 87.66 0.69 16.97 16 15 O -0.58 -23.58 16.50 15.75 0.26 -23.32 16 16 N -0.70 -24.59 5.55 -466.78 -2.59 -27.18 16 17 C 0.23 10.53 4.50 85.63 0.38 10.92 16 18 C -0.55 -28.60 9.83 25.60 0.25 -28.35 16 19 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 20 C 0.03 1.37 5.47 84.65 0.46 1.83 16 21 N -0.93 -53.86 13.96 21.45 0.30 -53.56 16 22 Si 0.94 42.09 27.47 68.60 1.88 43.98 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.26 -11.29 6.54 99.48 0.65 -10.64 16 26 C -0.12 -1.13 5.24 30.80 0.16 -0.97 16 27 C -0.03 -0.30 6.33 30.03 0.19 -0.11 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.35 8.04 -2.39 -0.02 0.33 16 30 H 0.10 0.72 8.14 -2.38 -0.02 0.71 16 31 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.11 0.98 7.79 -2.39 -0.02 0.96 16 33 H 0.13 2.12 8.13 -2.39 -0.02 2.10 16 34 H 0.13 2.12 8.13 -2.39 -0.02 2.10 16 35 H 0.41 12.24 8.32 -92.70 -0.77 11.47 16 36 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 37 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 38 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.11 1.14 7.89 -2.39 -0.02 1.12 16 41 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -78.49 359.69 3.64 -74.85 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.23 Total: 10.03 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.44 Total: 19.63 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -5.09 Total: -108.33 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: 0.17 Total: -40.15 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.98 kcal Total: -78.49 3.64 -74.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322895740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.804 kcal (2) G-P(sol) polarization free energy of solvation -78.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds