Wall clock time and date at job start Fri Apr 10 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 126.46659 * 2 1 4 4 N 1.28903 * 109.74156 * 179.97438 * 3 2 1 5 5 C 1.29778 * 109.50424 * 0.02562 * 4 3 2 6 6 N 1.34693 * 126.46343 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.85103 * 0.12596 * 6 2 1 8 8 C 1.53322 * 108.72933 * 162.86917 * 7 6 2 9 9 H 1.09004 * 109.45119 * 290.27258 * 8 7 6 10 10 C 1.50706 * 109.43309 * 170.32964 * 8 7 6 11 11 O 1.20819 * 120.00124 * 359.90127 * 10 8 7 12 12 O 1.34228 * 119.99581 * 179.90252 * 10 8 7 13 13 C 1.45199 * 116.99943 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.47343 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99997 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00263 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00408 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47493 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99779 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00386 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46602 * 119.99962 * 22 20 18 25 25 H 1.48495 * 109.47151 * 240.00123 * 22 20 18 26 26 C 1.53135 * 109.57772 * 50.30742 * 8 7 6 27 27 C 1.50798 * 128.57937 * 180.14698 * 5 4 3 28 28 H 1.08994 * 109.47045 * 269.97980 * 1 2 3 29 29 H 1.08999 * 109.46741 * 29.98202 * 1 2 3 30 30 H 1.09006 * 109.46730 * 149.97671 * 1 2 3 31 31 H 1.09003 * 109.59056 * 43.09847 * 7 6 2 32 32 H 1.08995 * 109.72414 * 282.71969 * 7 6 2 33 33 H 1.09000 * 109.47174 * 300.00138 * 13 12 10 34 34 H 1.08999 * 109.47111 * 59.99440 * 13 12 10 35 35 H 0.96999 * 119.99428 * 0.02562 * 16 14 13 36 36 H 1.09000 * 109.47066 * 300.00338 * 17 16 14 37 37 H 1.09007 * 109.46850 * 59.99401 * 17 16 14 38 38 H 0.96997 * 120.00934 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.49955 * 170.62058 * 26 8 7 40 40 H 1.08998 * 109.52845 * 50.54016 * 26 8 7 41 41 H 1.09002 * 109.73005 * 44.37589 * 27 5 4 42 42 H 1.08998 * 109.73124 * 283.74322 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5821 -0.6150 0.0004 6 7 2.3075 -1.0833 -0.0005 7 6 1.9368 -2.4980 -0.0036 8 6 3.1550 -3.3253 -0.4306 9 1 3.3616 -3.1489 -1.4863 10 6 2.8685 -4.7888 -0.2129 11 8 1.8026 -5.1351 0.2384 12 8 3.7977 -5.7074 -0.5204 13 6 3.4529 -7.0981 -0.2850 14 6 4.6090 -7.9773 -0.6868 15 8 5.6240 -7.4806 -1.1276 16 7 4.5156 -9.3153 -0.5553 17 6 5.6397 -10.1700 -0.9453 18 6 5.2818 -11.6133 -0.7011 19 1 4.3140 -11.8685 -0.2956 20 6 6.1900 -12.6081 -0.9955 21 7 7.3684 -12.2974 -1.4898 22 14 5.7466 -14.3972 -0.6922 23 1 4.3721 -14.4791 -0.1360 24 1 5.8071 -15.1461 -1.9732 25 1 6.7077 -14.9886 0.2730 26 6 4.3721 -2.9143 0.4029 27 6 4.8052 -1.4971 0.0038 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.1200 -2.6603 -0.7070 32 1 1.6232 -2.7984 0.9961 33 1 3.2351 -7.2444 0.7729 34 1 2.5753 -7.3599 -0.8761 35 1 3.7041 -9.7124 -0.2024 36 1 5.8572 -10.0239 -2.0033 37 1 6.5175 -9.9078 -0.3544 38 1 8.0075 -12.9972 -1.6966 39 1 5.1906 -3.6101 0.2192 40 1 4.1113 -2.9307 1.4611 41 1 5.5304 -1.1178 0.7237 42 1 5.2492 -1.5144 -0.9914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322895741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:57 Heat of formation + Delta-G solvation = -52.419221 kcal Electronic energy + Delta-G solvation = -26179.095553 eV Core-core repulsion = 22160.480459 eV Total energy + Delta-G solvation = -4018.615094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.69583 -41.09706 -38.99459 -37.65882 -36.59843 -34.55942 -34.36468 -32.51249 -32.16700 -31.01589 -29.38266 -27.76467 -26.95932 -25.54776 -23.77013 -22.74504 -21.92416 -21.29549 -20.12007 -19.97226 -18.38831 -17.71360 -17.11809 -16.99095 -16.84837 -16.25120 -15.61951 -15.45256 -15.22975 -15.07581 -14.61607 -14.48717 -14.40668 -14.23598 -13.58839 -13.34495 -13.18731 -13.06831 -12.86017 -12.70826 -12.46223 -12.09328 -11.97185 -11.89358 -11.76304 -11.55542 -11.06736 -11.03826 -10.93005 -10.91455 -10.65262 -10.51056 -10.41881 -9.50592 -9.32834 -9.31349 -8.86977 -8.10175 -6.26973 -4.34814 1.42767 1.68681 1.73062 2.28972 2.53124 3.02608 3.17081 3.24485 3.27119 3.50731 3.66112 3.76229 3.94638 4.00911 4.15430 4.26873 4.39426 4.48432 4.59540 4.62722 4.72965 4.93402 4.96047 4.99602 5.03967 5.09829 5.13784 5.18591 5.27091 5.37844 5.42561 5.50909 5.57701 5.82978 6.00051 6.44854 7.11345 7.16701 7.27987 7.36183 7.52479 7.83641 8.38097 8.41057 8.61132 8.84567 9.31974 10.83094 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039048 B = 0.001941 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.887947 B =14421.886478 C =15012.095232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.299 5.299 4 N -0.288 5.288 5 C 0.175 3.825 6 N -0.471 5.471 7 C 0.121 3.879 8 C -0.095 4.095 9 H 0.127 0.873 10 C 0.475 3.525 11 O -0.506 6.506 12 O -0.321 6.321 13 C 0.048 3.952 14 C 0.499 3.501 15 O -0.533 6.533 16 N -0.705 5.705 17 C 0.251 3.749 18 C -0.547 4.547 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.122 4.122 27 C -0.031 4.031 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.393 0.607 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 19.411 3.873 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.139 5.139 4 N -0.127 5.127 5 C -0.093 4.093 6 N -0.163 5.163 7 C -0.002 4.002 8 C -0.114 4.114 9 H 0.144 0.856 10 C 0.316 3.684 11 O -0.394 6.394 12 O -0.235 6.235 13 C -0.029 4.029 14 C 0.282 3.718 15 O -0.411 6.411 16 N -0.355 5.355 17 C 0.131 3.869 18 C -0.585 4.585 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.160 4.160 27 C -0.071 4.071 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.226 0.774 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.372 20.972 3.613 24.616 hybrid contribution -1.156 -2.738 0.306 2.987 sum -13.529 18.235 3.919 23.041 Atomic orbital electron populations 1.20240 0.83563 1.04650 1.04215 1.24697 0.97131 0.82595 1.04252 1.74510 0.96119 1.23570 1.19741 1.74038 1.12231 1.07998 1.18445 1.24813 0.86985 0.92633 1.04854 1.45944 1.07170 1.08092 1.55134 1.21773 0.97144 0.75883 1.05426 1.21256 0.97046 0.88054 1.05055 0.85556 1.23020 0.82098 0.88775 0.74467 1.90704 1.25196 1.82209 1.41312 1.86534 1.43511 1.16712 1.76729 1.22959 0.98663 0.77744 1.03531 1.19839 0.88018 0.83572 0.80417 1.90722 1.30996 1.74096 1.45253 1.46381 1.20713 1.04754 1.63662 1.19198 0.83618 0.87706 0.96394 1.21230 1.01793 0.90373 1.45090 0.91698 1.24956 0.94701 0.99750 0.94581 1.69971 1.06247 1.33651 1.42217 0.86333 0.78556 0.83802 0.78057 1.19606 1.20735 1.20725 1.21794 0.97092 0.97199 0.99918 1.20251 0.91150 0.90435 1.05222 0.89435 0.88546 0.90317 0.87575 0.87670 0.88247 0.88277 0.77386 0.95201 0.95187 0.92354 0.87176 0.90079 0.87238 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.29 36.01 0.37 0.02 16 2 C 0.18 1.72 8.07 -155.45 -1.25 0.47 16 3 N -0.30 -3.89 12.23 32.70 0.40 -3.49 16 4 N -0.29 -3.81 12.20 32.76 0.40 -3.42 16 5 C 0.17 1.75 7.75 -155.29 -1.20 0.54 16 6 N -0.47 -4.09 3.11 -110.86 -0.35 -4.43 16 7 C 0.12 0.78 5.48 -4.01 -0.02 0.76 16 8 C -0.09 -0.66 2.64 -91.53 -0.24 -0.90 16 9 H 0.13 0.77 8.12 -51.93 -0.42 0.34 16 10 C 0.47 4.71 7.25 36.01 0.26 4.98 16 11 O -0.51 -5.76 15.57 -18.74 -0.29 -6.05 16 12 O -0.32 -4.05 9.49 -45.90 -0.44 -4.48 16 13 C 0.05 0.62 5.94 36.00 0.21 0.83 16 14 C 0.50 9.04 7.91 -10.99 -0.09 8.95 16 15 O -0.53 -11.99 16.50 -14.11 -0.23 -12.23 16 16 N -0.70 -13.51 5.55 -61.47 -0.34 -13.85 16 17 C 0.25 6.26 5.43 -5.20 -0.03 6.23 16 18 C -0.55 -14.11 9.28 -34.44 -0.32 -14.43 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.88 -25.11 13.29 55.43 0.74 -24.38 16 22 Si 0.91 20.09 29.54 -169.99 -5.02 15.06 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.12 -0.79 5.24 -26.42 -0.14 -0.93 16 27 C -0.03 -0.21 6.33 -27.59 -0.17 -0.38 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.26 7.75 -51.93 -0.40 -0.14 16 31 H 0.11 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.11 0.66 7.79 -51.93 -0.40 0.26 16 33 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 34 H 0.10 1.08 8.13 -51.93 -0.42 0.65 16 35 H 0.39 6.24 8.32 -40.82 -0.34 5.91 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.11 0.75 7.89 -51.93 -0.41 0.34 16 40 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -35.72 362.73 -8.11 -43.83 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.72 Total: 0.21 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -2.72 Total: 7.75 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.85 Total: -49.57 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.96 Total: -22.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.72 -8.11 -43.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322895741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.594 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds