Wall clock time and date at job start Fri Apr 10 2020 18:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 126.46659 * 2 1 4 4 N 1.28903 * 109.74156 * 179.97438 * 3 2 1 5 5 C 1.29778 * 109.50424 * 0.02562 * 4 3 2 6 6 N 1.34693 * 126.46343 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.85103 * 0.12596 * 6 2 1 8 8 C 1.53322 * 108.72933 * 162.86917 * 7 6 2 9 9 H 1.09004 * 109.45119 * 290.27258 * 8 7 6 10 10 C 1.50706 * 109.43309 * 170.32964 * 8 7 6 11 11 O 1.20819 * 120.00124 * 359.90127 * 10 8 7 12 12 O 1.34228 * 119.99581 * 179.90252 * 10 8 7 13 13 C 1.45199 * 116.99943 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.47343 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99997 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00263 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00408 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47493 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99779 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00386 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46602 * 119.99962 * 22 20 18 25 25 H 1.48495 * 109.47151 * 240.00123 * 22 20 18 26 26 C 1.53135 * 109.57772 * 50.30742 * 8 7 6 27 27 C 1.50798 * 128.57937 * 180.14698 * 5 4 3 28 28 H 1.08994 * 109.47045 * 269.97980 * 1 2 3 29 29 H 1.08999 * 109.46741 * 29.98202 * 1 2 3 30 30 H 1.09006 * 109.46730 * 149.97671 * 1 2 3 31 31 H 1.09003 * 109.59056 * 43.09847 * 7 6 2 32 32 H 1.08995 * 109.72414 * 282.71969 * 7 6 2 33 33 H 1.09000 * 109.47174 * 300.00138 * 13 12 10 34 34 H 1.08999 * 109.47111 * 59.99440 * 13 12 10 35 35 H 0.96999 * 119.99428 * 0.02562 * 16 14 13 36 36 H 1.09000 * 109.47066 * 300.00338 * 17 16 14 37 37 H 1.09007 * 109.46850 * 59.99401 * 17 16 14 38 38 H 0.96997 * 120.00934 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.49955 * 170.62058 * 26 8 7 40 40 H 1.08998 * 109.52845 * 50.54016 * 26 8 7 41 41 H 1.09002 * 109.73005 * 44.37589 * 27 5 4 42 42 H 1.08998 * 109.73124 * 283.74322 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5821 -0.6150 0.0004 6 7 2.3075 -1.0833 -0.0005 7 6 1.9368 -2.4980 -0.0036 8 6 3.1550 -3.3253 -0.4306 9 1 3.3616 -3.1489 -1.4863 10 6 2.8685 -4.7888 -0.2129 11 8 1.8026 -5.1351 0.2384 12 8 3.7977 -5.7074 -0.5204 13 6 3.4529 -7.0981 -0.2850 14 6 4.6090 -7.9773 -0.6868 15 8 5.6240 -7.4806 -1.1276 16 7 4.5156 -9.3153 -0.5553 17 6 5.6397 -10.1700 -0.9453 18 6 5.2818 -11.6133 -0.7011 19 1 4.3140 -11.8685 -0.2956 20 6 6.1900 -12.6081 -0.9955 21 7 7.3684 -12.2974 -1.4898 22 14 5.7466 -14.3972 -0.6922 23 1 4.3721 -14.4791 -0.1360 24 1 5.8071 -15.1461 -1.9732 25 1 6.7077 -14.9886 0.2730 26 6 4.3721 -2.9143 0.4029 27 6 4.8052 -1.4971 0.0038 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.1200 -2.6603 -0.7070 32 1 1.6232 -2.7984 0.9961 33 1 3.2351 -7.2444 0.7729 34 1 2.5753 -7.3599 -0.8761 35 1 3.7041 -9.7124 -0.2024 36 1 5.8572 -10.0239 -2.0033 37 1 6.5175 -9.9078 -0.3544 38 1 8.0075 -12.9972 -1.6966 39 1 5.1906 -3.6101 0.2192 40 1 4.1113 -2.9307 1.4611 41 1 5.5304 -1.1178 0.7237 42 1 5.2492 -1.5144 -0.9914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322895741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:56 Heat of formation + Delta-G solvation = -75.867631 kcal Electronic energy + Delta-G solvation = -26180.112352 eV Core-core repulsion = 22160.480459 eV Total energy + Delta-G solvation = -4019.631893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.41323 -41.96503 -40.44613 -38.43835 -37.47864 -36.17409 -35.19412 -34.41125 -32.84050 -31.58370 -30.74926 -28.59472 -28.36475 -26.32790 -24.67132 -24.32041 -22.66121 -22.06955 -21.63464 -20.65790 -19.29057 -19.08840 -18.03830 -17.88270 -17.63390 -17.56874 -16.96158 -16.78092 -16.36249 -16.01839 -15.90407 -15.36233 -15.11088 -14.94501 -14.68770 -14.39506 -14.15416 -13.98547 -13.86695 -13.65362 -13.46657 -13.28187 -13.18208 -12.91034 -12.76232 -12.67151 -12.34451 -12.22457 -12.14076 -11.92711 -11.71004 -11.46437 -11.39125 -11.17145 -10.89912 -10.82944 -10.06031 -9.91676 -8.29761 -6.45968 0.75467 0.91729 0.95828 1.44751 1.45000 1.53580 1.57607 1.58904 1.75077 2.32778 2.53443 2.93817 3.05897 3.15465 3.31903 3.42274 3.52363 3.68913 3.82835 3.90925 4.03746 4.07400 4.10822 4.16452 4.23707 4.46146 4.60177 4.65716 4.82307 4.86461 4.92133 4.96881 4.99540 5.07614 5.17237 5.21399 5.23048 5.42963 5.63316 5.82900 5.83722 6.43110 6.63974 6.79243 7.21434 7.37213 7.64942 8.82330 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039048 B = 0.001941 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.887947 B =14421.886478 C =15012.095232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.185 3.815 3 N -0.348 5.348 4 N -0.334 5.334 5 C 0.174 3.826 6 N -0.470 5.470 7 C 0.122 3.878 8 C -0.089 4.089 9 H 0.139 0.861 10 C 0.483 3.517 11 O -0.516 6.516 12 O -0.340 6.340 13 C 0.061 3.939 14 C 0.498 3.502 15 O -0.583 6.583 16 N -0.700 5.700 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.983 3.017 23 H -0.252 1.252 24 H -0.281 1.281 25 H -0.280 1.280 26 C -0.116 4.116 27 C -0.027 4.027 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.412 0.588 36 H -0.008 1.008 37 H -0.007 1.007 38 H 0.269 0.731 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.109 18.388 4.659 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 N -0.187 5.187 4 N -0.172 5.172 5 C -0.094 4.094 6 N -0.162 5.162 7 C 0.000 4.000 8 C -0.108 4.108 9 H 0.156 0.844 10 C 0.325 3.675 11 O -0.405 6.405 12 O -0.255 6.255 13 C -0.015 4.015 14 C 0.284 3.716 15 O -0.463 6.463 16 N -0.351 5.351 17 C 0.144 3.856 18 C -0.593 4.593 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.807 3.193 23 H -0.176 1.176 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.154 4.154 27 C -0.066 4.066 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.249 0.751 36 H 0.010 0.990 37 H 0.011 0.989 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.136 0.864 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.130 19.970 4.423 25.442 hybrid contribution -0.327 -2.350 0.057 2.373 sum -15.458 17.620 4.480 23.864 Atomic orbital electron populations 1.20467 0.80598 1.06011 1.05519 1.25438 0.98642 0.82061 1.02135 1.74407 0.96613 1.25584 1.22142 1.73927 1.12921 1.09891 1.20510 1.25286 0.88345 0.92230 1.03578 1.46065 1.06619 1.08776 1.54723 1.21921 0.97260 0.74393 1.06385 1.21286 0.97499 0.86075 1.05926 0.84350 1.23364 0.81364 0.89067 0.73665 1.90704 1.25507 1.82422 1.41843 1.86529 1.44832 1.16743 1.77358 1.22778 0.95992 0.77313 1.05433 1.20733 0.88861 0.83372 0.78653 1.90700 1.33529 1.74888 1.47195 1.46045 1.19990 1.05160 1.63918 1.18614 0.84500 0.88981 0.93513 1.21650 1.02604 0.90552 1.44537 0.89553 1.26031 0.94455 1.04951 0.94129 1.70125 1.07686 1.35343 1.43654 0.85132 0.79032 0.77379 0.77801 1.17575 1.20644 1.20626 1.21746 0.96851 0.96737 1.00068 1.20364 0.90186 0.89918 1.06173 0.88015 0.88143 0.87973 0.85606 0.87083 0.85471 0.85507 0.75117 0.98965 0.98918 0.92241 0.87404 0.89707 0.86419 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.29 71.24 0.73 0.20 16 2 C 0.19 3.32 8.07 138.14 1.11 4.44 16 3 N -0.35 -9.14 12.23 -50.46 -0.62 -9.76 16 4 N -0.33 -8.99 12.20 -50.27 -0.61 -9.60 16 5 C 0.17 3.37 7.75 138.13 1.07 4.44 16 6 N -0.47 -7.37 3.11 -504.64 -1.57 -8.94 16 7 C 0.12 1.24 5.48 86.53 0.47 1.71 16 8 C -0.09 -1.02 2.64 -11.39 -0.03 -1.05 16 9 H 0.14 1.32 8.12 -2.39 -0.02 1.30 16 10 C 0.48 8.22 7.25 71.24 0.52 8.74 16 11 O -0.52 -9.96 15.57 21.99 0.34 -9.62 16 12 O -0.34 -7.82 9.49 -45.05 -0.43 -8.25 16 13 C 0.06 1.41 5.94 71.23 0.42 1.83 16 14 C 0.50 17.75 7.91 87.66 0.69 18.44 16 15 O -0.58 -26.77 16.50 15.74 0.26 -26.51 16 16 N -0.70 -26.48 5.55 -466.79 -2.59 -29.07 16 17 C 0.27 13.69 5.43 85.63 0.46 14.15 16 18 C -0.56 -28.55 9.28 25.60 0.24 -28.32 16 19 H 0.09 3.97 7.60 -2.91 -0.02 3.94 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 22 Si 0.98 40.61 29.54 68.60 2.03 42.64 16 23 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 26 C -0.12 -1.29 5.24 30.80 0.16 -1.13 16 27 C -0.03 -0.33 6.33 30.04 0.19 -0.14 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.34 7.75 -2.38 -0.02 0.32 16 31 H 0.13 0.81 7.85 -2.39 -0.02 0.79 16 32 H 0.11 1.05 7.79 -2.39 -0.02 1.03 16 33 H 0.13 2.28 8.13 -2.39 -0.02 2.26 16 34 H 0.13 2.28 8.13 -2.39 -0.02 2.26 16 35 H 0.41 12.29 8.32 -92.71 -0.77 11.52 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.11 1.32 7.89 -2.39 -0.02 1.30 16 40 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 41 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -81.04 362.73 3.89 -77.14 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.29 Total: 11.78 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.51 Total: 23.99 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -5.11 Total: -111.18 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: 0.17 Total: -44.38 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -81.04 3.89 -77.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322895741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.276 kcal (2) G-P(sol) polarization free energy of solvation -81.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds