Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42894 * 109.52503 * 2 1 4 4 C 1.53044 * 109.49857 * 120.08631 * 2 1 3 5 5 C 1.53036 * 109.53436 * 181.31795 * 4 2 1 6 6 C 1.53196 * 109.31112 * 298.62668 * 5 4 2 7 7 N 1.46921 * 108.77366 * 54.64234 * 6 5 4 8 8 C 1.34772 * 120.63077 * 126.41183 * 7 6 5 9 9 O 1.21365 * 120.00020 * 172.91514 * 8 7 6 10 10 C 1.49313 * 120.00263 * 352.91114 * 8 7 6 11 11 O 1.21401 * 119.99803 * 353.57763 * 10 8 7 12 12 N 1.34770 * 120.00104 * 173.57254 * 10 8 7 13 13 C 1.40291 * 119.99861 * 179.97438 * 12 10 8 14 14 C 1.40722 * 126.10121 * 359.70009 * 13 12 10 15 15 N 1.30885 * 108.37822 * 179.85064 * 14 13 12 16 16 N 1.40064 * 108.43256 * 0.40296 * 15 14 13 17 17 C 1.37288 * 126.05651 * 179.76525 * 16 15 14 18 18 H 1.08002 * 120.00600 * 179.97438 * 17 16 15 19 19 C 1.39017 * 119.99631 * 359.97249 * 17 16 15 20 20 N 1.31278 * 119.99960 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47316 * 89.99942 * 21 19 17 23 23 H 1.48502 * 109.46969 * 209.99993 * 21 19 17 24 24 H 1.48501 * 109.47232 * 329.99575 * 21 19 17 25 25 C 1.35795 * 126.10079 * 180.02562 * 13 12 10 26 26 C 1.46927 * 118.73772 * 306.39092 * 7 6 5 27 27 H 1.08996 * 109.46965 * 299.91360 * 1 2 3 28 28 H 1.08995 * 109.47020 * 59.91608 * 1 2 3 29 29 H 1.09002 * 109.46922 * 179.91519 * 1 2 3 30 30 H 0.96705 * 114.00131 * 300.08762 * 3 2 1 31 31 H 1.08999 * 109.45497 * 301.33296 * 4 2 1 32 32 H 1.08999 * 109.46194 * 61.30433 * 4 2 1 33 33 H 1.08994 * 109.50396 * 58.58239 * 5 4 2 34 34 H 1.09001 * 109.49499 * 178.65079 * 5 4 2 35 35 H 1.09001 * 109.58627 * 174.42731 * 6 5 4 36 36 H 1.08999 * 109.59018 * 294.71020 * 6 5 4 37 37 H 0.97002 * 120.00122 * 0.02562 * 12 10 8 38 38 H 1.07997 * 125.80977 * 359.97436 * 14 13 12 39 39 H 0.97005 * 120.00033 * 180.02562 * 20 19 17 40 40 H 1.07994 * 126.24519 * 359.97438 * 25 13 12 41 41 H 1.09004 * 109.58525 * 293.81983 * 26 7 6 42 42 H 1.09002 * 109.58704 * 173.39718 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0409 -0.7232 1.2483 5 6 3.5709 -0.6951 1.2659 6 6 4.1053 -1.4268 0.0306 7 7 3.5046 -0.8292 -1.1697 8 6 4.2811 -0.3864 -2.1784 9 8 3.7739 -0.0139 -3.2161 10 6 5.7654 -0.3541 -2.0192 11 8 6.2664 -0.6149 -0.9446 12 7 6.5488 -0.0356 -3.0685 13 6 7.9434 -0.0048 -2.9187 14 6 8.6566 -0.2766 -1.7365 15 7 9.9349 -0.1507 -1.9875 16 7 10.0886 0.2139 -3.3311 17 6 11.2791 0.4450 -3.9746 18 1 11.2840 0.7221 -5.0184 19 6 12.4785 0.3223 -3.2825 20 7 12.4727 -0.0149 -2.0138 21 14 14.0984 0.6373 -4.1578 22 1 14.4587 2.0723 -4.0309 23 1 15.1630 -0.1966 -3.5442 24 1 13.9612 0.2866 -5.5943 25 6 8.8456 0.2988 -3.8872 26 6 2.0413 -0.7238 -1.2496 27 1 -0.3633 0.5125 0.8907 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0015 30 1 1.7217 1.8655 -0.7644 31 1 1.6583 -0.2246 2.1388 32 1 1.6970 -1.7574 1.2351 33 1 3.9160 0.3387 1.2540 34 1 3.9335 -1.1893 2.1672 35 1 5.1896 -1.3247 -0.0140 36 1 3.8397 -2.4824 0.0878 37 1 6.1485 0.1730 -3.9270 38 1 8.2230 -0.5456 -0.7846 39 1 13.3096 -0.1002 -1.5307 40 1 8.6202 0.5594 -4.9107 41 1 1.6052 -1.7216 -1.2981 42 1 1.7637 -0.1579 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323226531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -14.050546 kcal Electronic energy + Delta-G solvation = -27400.142308 eV Core-core repulsion = 23383.191005 eV Total energy + Delta-G solvation = -4016.951303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93732 -39.79887 -38.85919 -37.79711 -35.86643 -34.34967 -33.24576 -32.64793 -31.59417 -30.34677 -28.21608 -27.43168 -26.22579 -25.04149 -23.21684 -22.50388 -21.15635 -20.47960 -19.64543 -19.50290 -17.72023 -17.27778 -16.95965 -16.49874 -15.62765 -15.53924 -15.35657 -15.16123 -14.86350 -14.75770 -14.48173 -14.07272 -13.74271 -13.57219 -13.17566 -13.06915 -13.01255 -12.69920 -12.59899 -12.31333 -11.96954 -11.74998 -11.64639 -11.35087 -11.30491 -11.14114 -10.89924 -10.72461 -10.60385 -10.56414 -10.38989 -10.29152 -9.25514 -8.91838 -8.73683 -8.59458 -8.15061 -6.81086 -6.62171 -4.29565 1.61523 2.51534 2.92195 3.02959 3.07879 3.29184 3.66855 3.68471 3.85297 3.97932 4.32511 4.35147 4.52102 4.56288 4.57180 4.90825 4.95584 4.96622 5.11014 5.19141 5.33297 5.36490 5.40229 5.50363 5.66538 5.72140 5.79122 5.86663 6.13313 6.18915 6.32094 6.33402 6.38009 6.73115 6.86688 7.05949 7.15325 7.17918 7.44969 7.70343 7.81660 8.08190 8.16335 8.47009 8.67221 9.29027 9.57622 10.33548 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.002546 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.934907 B =10996.942953 C =11446.701137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 O -0.550 6.550 4 C -0.107 4.107 5 C -0.127 4.127 6 C 0.045 3.955 7 N -0.574 5.574 8 C 0.518 3.482 9 O -0.536 6.536 10 C 0.488 3.512 11 O -0.510 6.510 12 N -0.578 5.578 13 C -0.072 4.072 14 C -0.025 4.025 15 N -0.260 5.260 16 N -0.137 5.137 17 C -0.321 4.321 18 H 0.118 0.882 19 C 0.046 3.954 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.077 4.077 26 C 0.083 3.917 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.375 0.625 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.178 0.822 39 H 0.276 0.724 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.358 -1.718 2.644 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.074 3.926 3 O -0.355 6.355 4 C -0.144 4.144 5 C -0.165 4.165 6 C -0.075 4.075 7 N -0.306 5.306 8 C 0.302 3.698 9 O -0.413 6.413 10 C 0.270 3.730 11 O -0.390 6.390 12 N -0.219 5.219 13 C -0.178 4.178 14 C -0.200 4.200 15 N -0.091 5.091 16 N 0.096 4.904 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.228 4.228 26 C -0.040 4.040 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.222 0.778 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.181 0.819 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.195 0.805 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.095 0.905 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.643 -2.027 4.067 18.219 hybrid contribution -0.939 0.430 -1.689 1.980 sum -18.581 -1.597 2.378 18.801 Atomic orbital electron populations 1.22434 0.95090 1.02947 1.02926 1.21568 0.92404 0.83245 0.95368 1.86593 1.77126 1.22497 1.49289 1.21567 0.97132 0.99482 0.96265 1.21774 0.94285 1.02569 0.97858 1.23372 1.06316 0.95374 0.82486 1.47716 1.05660 1.58687 1.18580 1.20126 0.88185 0.78047 0.83461 1.90705 1.75396 1.47996 1.27179 1.19658 0.86993 0.81437 0.84919 1.90180 1.73541 1.49810 1.25486 1.42168 1.04784 1.62582 1.12393 1.17258 0.80632 1.23254 0.96625 1.24154 0.90830 1.06758 0.98303 1.78273 1.14880 1.23155 0.92794 1.44568 1.03467 1.36042 1.06326 1.19931 0.80569 1.48828 0.96054 0.86421 1.25671 1.00382 0.95451 0.95635 1.70203 1.28346 1.33208 1.07538 0.85801 0.79732 0.78938 0.79554 1.19512 1.20031 1.18737 1.21309 0.85306 1.17782 0.98447 1.22397 0.80517 1.01690 0.99373 0.91326 0.92034 0.91374 0.77794 0.91132 0.90756 0.90427 0.90737 0.81890 0.92253 0.75521 0.80483 0.91323 0.83345 0.90509 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 8.82 37.16 0.33 -0.81 16 2 C 0.12 1.05 1.01 -90.50 -0.09 0.96 16 3 O -0.55 -6.01 12.17 -35.23 -0.43 -6.44 16 4 C -0.11 -0.97 4.92 -26.69 -0.13 -1.10 16 5 C -0.13 -1.41 5.94 -26.61 -0.16 -1.57 16 6 C 0.04 0.56 6.27 -3.71 -0.02 0.54 16 7 N -0.57 -7.59 2.91 -173.33 -0.50 -8.10 16 8 C 0.52 8.24 7.74 -11.65 -0.09 8.15 16 9 O -0.54 -9.02 15.94 5.48 0.09 -8.93 16 10 C 0.49 8.83 7.74 -11.65 -0.09 8.74 16 11 O -0.51 -9.91 10.24 5.45 0.06 -9.86 16 12 N -0.58 -10.84 5.45 -10.45 -0.06 -10.89 16 13 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 14 C -0.02 -0.63 10.85 -17.02 -0.18 -0.81 16 15 N -0.26 -7.37 10.39 30.81 0.32 -7.05 16 16 N -0.14 -3.70 3.73 -11.40 -0.04 -3.74 16 17 C -0.32 -8.34 10.25 -14.82 -0.15 -8.49 16 18 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -20.96 11.81 55.50 0.66 -20.31 16 21 Si 0.94 18.56 29.55 -169.99 -5.02 13.54 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 26 C 0.08 0.86 5.34 -3.71 -0.02 0.84 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.37 3.07 9.05 45.56 0.41 3.48 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.17 2.49 3.78 -56.78 -0.21 2.28 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.41 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.18 4.31 5.92 -52.49 -0.31 4.00 16 39 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.15 2.90 8.06 -52.49 -0.42 2.47 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.01 7.06 -51.93 -0.37 0.64 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -32.26 347.34 -5.74 -38.01 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -4.56 Total: 15.21 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.48 Total: 3.33 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.37 Total: -50.09 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.29 Total: -25.23 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.26 -5.74 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.958 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds