Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42894 * 109.52503 * 2 1 4 4 C 1.53044 * 109.49857 * 120.08631 * 2 1 3 5 5 C 1.53036 * 109.53436 * 181.31795 * 4 2 1 6 6 C 1.53196 * 109.31112 * 298.62668 * 5 4 2 7 7 N 1.46921 * 108.77366 * 54.64234 * 6 5 4 8 8 C 1.34772 * 120.63077 * 126.41183 * 7 6 5 9 9 O 1.21365 * 120.00020 * 172.91514 * 8 7 6 10 10 C 1.49313 * 120.00263 * 352.91114 * 8 7 6 11 11 O 1.21401 * 119.99803 * 353.57763 * 10 8 7 12 12 N 1.34770 * 120.00104 * 173.57254 * 10 8 7 13 13 C 1.40291 * 119.99861 * 179.97438 * 12 10 8 14 14 C 1.40722 * 126.10121 * 359.70009 * 13 12 10 15 15 N 1.30885 * 108.37822 * 179.85064 * 14 13 12 16 16 N 1.40064 * 108.43256 * 0.40296 * 15 14 13 17 17 C 1.37288 * 126.05651 * 179.76525 * 16 15 14 18 18 H 1.08002 * 120.00600 * 179.97438 * 17 16 15 19 19 C 1.39017 * 119.99631 * 359.97249 * 17 16 15 20 20 N 1.31278 * 119.99960 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47316 * 89.99942 * 21 19 17 23 23 H 1.48502 * 109.46969 * 209.99993 * 21 19 17 24 24 H 1.48501 * 109.47232 * 329.99575 * 21 19 17 25 25 C 1.35795 * 126.10079 * 180.02562 * 13 12 10 26 26 C 1.46927 * 118.73772 * 306.39092 * 7 6 5 27 27 H 1.08996 * 109.46965 * 299.91360 * 1 2 3 28 28 H 1.08995 * 109.47020 * 59.91608 * 1 2 3 29 29 H 1.09002 * 109.46922 * 179.91519 * 1 2 3 30 30 H 0.96705 * 114.00131 * 300.08762 * 3 2 1 31 31 H 1.08999 * 109.45497 * 301.33296 * 4 2 1 32 32 H 1.08999 * 109.46194 * 61.30433 * 4 2 1 33 33 H 1.08994 * 109.50396 * 58.58239 * 5 4 2 34 34 H 1.09001 * 109.49499 * 178.65079 * 5 4 2 35 35 H 1.09001 * 109.58627 * 174.42731 * 6 5 4 36 36 H 1.08999 * 109.59018 * 294.71020 * 6 5 4 37 37 H 0.97002 * 120.00122 * 0.02562 * 12 10 8 38 38 H 1.07997 * 125.80977 * 359.97436 * 14 13 12 39 39 H 0.97005 * 120.00033 * 180.02562 * 20 19 17 40 40 H 1.07994 * 126.24519 * 359.97438 * 25 13 12 41 41 H 1.09004 * 109.58525 * 293.81983 * 26 7 6 42 42 H 1.09002 * 109.58704 * 173.39718 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0409 -0.7232 1.2483 5 6 3.5709 -0.6951 1.2659 6 6 4.1053 -1.4268 0.0306 7 7 3.5046 -0.8292 -1.1697 8 6 4.2811 -0.3864 -2.1784 9 8 3.7739 -0.0139 -3.2161 10 6 5.7654 -0.3541 -2.0192 11 8 6.2664 -0.6149 -0.9446 12 7 6.5488 -0.0356 -3.0685 13 6 7.9434 -0.0048 -2.9187 14 6 8.6566 -0.2766 -1.7365 15 7 9.9349 -0.1507 -1.9875 16 7 10.0886 0.2139 -3.3311 17 6 11.2791 0.4450 -3.9746 18 1 11.2840 0.7221 -5.0184 19 6 12.4785 0.3223 -3.2825 20 7 12.4727 -0.0149 -2.0138 21 14 14.0984 0.6373 -4.1578 22 1 14.4587 2.0723 -4.0309 23 1 15.1630 -0.1966 -3.5442 24 1 13.9612 0.2866 -5.5943 25 6 8.8456 0.2988 -3.8872 26 6 2.0413 -0.7238 -1.2496 27 1 -0.3633 0.5125 0.8907 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0015 30 1 1.7217 1.8655 -0.7644 31 1 1.6583 -0.2246 2.1388 32 1 1.6970 -1.7574 1.2351 33 1 3.9160 0.3387 1.2540 34 1 3.9335 -1.1893 2.1672 35 1 5.1896 -1.3247 -0.0140 36 1 3.8397 -2.4824 0.0878 37 1 6.1485 0.1730 -3.9270 38 1 8.2230 -0.5456 -0.7846 39 1 13.3096 -0.1002 -1.5307 40 1 8.6202 0.5594 -4.9107 41 1 1.6052 -1.7216 -1.2981 42 1 1.7637 -0.1579 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323226531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -39.110000 kcal Electronic energy + Delta-G solvation = -27401.228967 eV Core-core repulsion = 23383.191005 eV Total energy + Delta-G solvation = -4018.037963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26575 -41.42740 -40.09209 -39.10151 -36.95261 -35.90241 -35.00564 -33.59440 -32.39842 -32.28850 -29.95316 -28.37367 -27.35009 -26.70931 -24.56123 -23.38007 -22.94660 -21.65545 -21.30637 -20.73104 -19.43537 -18.60675 -18.06696 -17.58802 -17.42112 -16.91994 -16.76898 -16.31272 -15.97931 -15.85628 -15.59937 -15.46781 -15.22256 -14.94146 -14.83362 -14.37374 -13.97452 -13.65717 -13.51610 -13.45085 -13.20444 -13.05723 -12.92490 -12.83969 -12.62893 -12.45388 -12.08814 -12.03483 -11.99157 -11.75669 -11.40783 -11.18389 -11.07167 -10.86714 -10.14086 -9.98500 -9.71482 -8.63147 -8.48903 -6.26507 0.24011 1.25303 1.29458 1.41974 1.58752 1.71969 2.01894 2.11069 2.44539 2.51825 2.84348 3.07695 3.30477 3.37124 3.64436 3.82429 3.86630 4.10080 4.32167 4.39203 4.42311 4.51898 4.58131 4.64441 4.73232 4.80335 4.88053 4.93742 4.95389 4.98329 5.05491 5.14151 5.23830 5.26660 5.33933 5.43940 5.57828 5.91828 5.99947 6.20797 6.38222 6.67714 6.74638 6.80711 7.07290 7.41013 7.62846 8.50242 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.002546 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.934907 B =10996.942953 C =11446.701137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 O -0.573 6.573 4 C -0.106 4.106 5 C -0.123 4.123 6 C 0.043 3.957 7 N -0.565 5.565 8 C 0.521 3.479 9 O -0.547 6.547 10 C 0.487 3.513 11 O -0.525 6.525 12 N -0.579 5.579 13 C -0.058 4.058 14 C -0.045 4.045 15 N -0.307 5.307 16 N -0.163 5.163 17 C -0.353 4.353 18 H 0.141 0.859 19 C -0.005 4.005 20 N -0.820 5.820 21 Si 1.019 2.981 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.245 1.245 25 C -0.075 4.075 26 C 0.079 3.921 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.384 0.616 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.422 0.578 38 H 0.178 0.822 39 H 0.278 0.722 40 H 0.187 0.813 41 H 0.103 0.897 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.417 -2.092 1.613 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 O -0.381 6.381 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.078 4.078 7 N -0.297 5.297 8 C 0.303 3.697 9 O -0.425 6.425 10 C 0.270 3.730 11 O -0.404 6.404 12 N -0.223 5.223 13 C -0.164 4.164 14 C -0.221 4.221 15 N -0.139 5.139 16 N 0.069 4.931 17 C -0.484 4.484 18 H 0.159 0.841 19 C -0.217 4.217 20 N -0.448 5.448 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.168 1.168 25 C -0.226 4.226 26 C -0.043 4.043 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.260 0.740 38 H 0.195 0.805 39 H 0.088 0.912 40 H 0.204 0.796 41 H 0.121 0.879 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.771 -2.404 3.041 20.147 hybrid contribution -0.521 0.513 -1.276 1.471 sum -20.292 -1.891 1.765 20.457 Atomic orbital electron populations 1.22360 0.92605 1.04238 1.03386 1.21710 0.94153 0.82236 0.94585 1.86575 1.77811 1.23616 1.50094 1.21628 0.95095 1.01081 0.96555 1.21710 0.96224 1.00507 0.97652 1.23290 1.04721 0.96945 0.82826 1.47835 1.07016 1.57060 1.17742 1.19619 0.86938 0.78934 0.84208 1.90702 1.75070 1.49101 1.27677 1.20298 0.88330 0.79982 0.84345 1.90238 1.74522 1.49572 1.26083 1.42120 1.03179 1.63473 1.13510 1.17289 0.82476 1.21210 0.95411 1.24277 0.90787 1.07685 0.99343 1.78167 1.16395 1.24806 0.94517 1.44837 1.04809 1.37318 1.06109 1.20649 0.80908 1.49554 0.97293 0.84136 1.26877 1.04303 0.94345 0.96174 1.70371 1.29451 1.35283 1.09673 0.84589 0.74003 0.78731 0.78883 1.18924 1.20090 1.16800 1.22000 0.84326 1.16244 1.00046 1.22716 0.78136 1.03365 1.00050 0.91259 0.91256 0.89642 0.76746 0.90646 0.88277 0.93552 0.89380 0.84690 0.89756 0.73992 0.80520 0.91224 0.79584 0.87924 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 8.82 71.98 0.64 -0.97 16 2 C 0.11 1.78 1.01 -10.71 -0.01 1.77 16 3 O -0.57 -11.82 12.17 -148.98 -1.81 -13.63 16 4 C -0.11 -1.63 4.92 30.62 0.15 -1.48 16 5 C -0.12 -2.58 5.94 30.67 0.18 -2.40 16 6 C 0.04 1.02 6.27 86.36 0.54 1.56 16 7 N -0.57 -14.07 2.91 -820.65 -2.39 -16.46 16 8 C 0.52 16.09 7.74 87.23 0.67 16.76 16 9 O -0.55 -17.72 15.94 -3.29 -0.05 -17.77 16 10 C 0.49 17.68 7.74 87.23 0.68 18.36 16 11 O -0.52 -20.87 10.24 -3.40 -0.03 -20.91 16 12 N -0.58 -21.57 5.45 -305.33 -1.66 -23.24 16 13 C -0.06 -2.65 6.90 37.83 0.26 -2.39 16 14 C -0.05 -2.40 10.85 85.44 0.93 -1.47 16 15 N -0.31 -18.13 10.39 -56.43 -0.59 -18.72 16 16 N -0.16 -8.94 3.73 -189.97 -0.71 -9.65 16 17 C -0.35 -18.47 10.25 84.03 0.86 -17.61 16 18 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 19 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 20 N -0.82 -46.53 11.81 21.67 0.26 -46.27 16 21 Si 1.02 38.05 29.55 68.60 2.03 40.08 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 23 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.24 -8.32 7.11 99.48 0.71 -7.61 16 25 C -0.08 -3.49 11.50 83.41 0.96 -2.53 16 26 C 0.08 1.41 5.34 86.36 0.46 1.87 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.38 5.87 9.05 -74.05 -0.67 5.20 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.26 7.61 -2.39 -0.02 1.24 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.14 4.15 3.78 -79.13 -0.30 3.85 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 13.36 8.31 -92.71 -0.77 12.59 16 38 H 0.18 9.07 5.92 -2.91 -0.02 9.05 16 39 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 40 H 0.19 6.93 8.06 -2.91 -0.02 6.90 16 41 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.09 1.73 7.06 -2.39 -0.02 1.71 16 Total: -1.00 -72.98 347.34 1.17 -71.81 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.64 Total: 43.08 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.78 Total: 11.69 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -5.09 Total: -114.34 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -1.90 Total: -52.31 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -72.98 1.17 -71.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.697 kcal (2) G-P(sol) polarization free energy of solvation -72.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds