Wall clock time and date at job start Fri Apr 10 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.99900 * 2 1 4 4 O 1.42895 * 109.47251 * 64.63713 * 3 2 1 5 5 C 1.54314 * 109.98741 * 238.97428 * 2 1 3 6 6 C 1.55164 * 102.86078 * 263.04233 * 5 2 1 7 7 C 1.54909 * 101.58143 * 324.30620 * 6 5 2 8 8 N 1.47026 * 109.88671 * 121.09234 * 2 1 3 9 9 C 1.34776 * 125.64873 * 300.51885 * 8 2 1 10 10 O 1.21366 * 119.99717 * 359.70978 * 9 8 2 11 11 C 1.49299 * 119.99959 * 179.71427 * 9 8 2 12 12 O 1.21403 * 120.00192 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99959 * 179.97438 * 11 9 8 14 14 C 1.40304 * 120.00249 * 179.97438 * 13 11 9 15 15 C 1.40722 * 126.09424 * 0.02562 * 14 13 11 16 16 N 1.30880 * 108.37087 * 179.97438 * 15 14 13 17 17 N 1.40060 * 108.43559 * 0.02562 * 16 15 14 18 18 C 1.37300 * 126.05332 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00347 * 188.38756 * 18 17 16 20 20 C 1.39010 * 119.99985 * 8.38799 * 18 17 16 21 21 N 1.31282 * 120.00016 * 193.41030 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 13.40852 * 20 18 17 23 23 H 1.48504 * 109.46940 * 269.99923 * 22 20 18 24 24 H 1.48505 * 109.47172 * 150.00112 * 22 20 18 25 25 H 1.48500 * 109.47138 * 29.99966 * 22 20 18 26 26 C 1.35784 * 126.09820 * 180.30905 * 14 13 11 27 27 H 1.08998 * 109.46988 * 300.35551 * 1 2 3 28 28 H 1.08997 * 109.46895 * 60.35882 * 1 2 3 29 29 H 1.08996 * 109.46682 * 180.36100 * 1 2 3 30 30 H 1.08994 * 109.47362 * 184.64706 * 3 2 1 31 31 H 1.09003 * 109.46684 * 304.64588 * 3 2 1 32 32 H 0.96694 * 114.00594 * 180.02562 * 4 3 2 33 33 H 1.08998 * 110.92389 * 144.63176 * 5 2 1 34 34 H 1.08999 * 110.74291 * 21.37224 * 5 2 1 35 35 H 1.09001 * 111.00507 * 206.22737 * 6 5 2 36 36 H 1.09007 * 111.00138 * 82.38042 * 6 5 2 37 37 H 1.08998 * 110.35969 * 278.16457 * 7 6 5 38 38 H 1.08996 * 110.36173 * 155.84803 * 7 6 5 39 39 H 0.97005 * 120.00181 * 359.97438 * 13 11 9 40 40 H 1.07994 * 125.81766 * 359.97438 * 15 14 13 41 41 H 0.96999 * 120.00069 * 354.69999 * 21 20 18 42 42 H 1.07995 * 126.25360 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.6739 2.0828 1.2174 5 6 2.0575 -0.7475 -1.2427 6 6 2.3477 -2.1692 -0.6932 7 6 2.8524 -1.8529 0.7368 8 7 2.0301 -0.7140 1.1840 9 6 1.7743 -0.3852 2.4657 10 8 1.0804 0.5780 2.7182 11 6 2.3447 -1.2058 3.5749 12 8 3.0385 -2.1695 3.3224 13 7 2.0893 -0.8767 4.8567 14 6 2.6248 -1.6481 5.8992 15 6 3.4410 -2.7852 5.7542 16 7 3.7422 -3.2316 6.9471 17 7 3.1331 -2.4022 7.8972 18 6 3.2114 -2.5422 9.2608 19 1 2.5951 -1.9303 9.9028 20 6 4.0839 -3.4716 9.8151 21 7 3.9782 -3.7967 11.0826 22 14 5.4068 -4.2580 8.7563 23 1 4.8733 -5.4981 8.1376 24 1 6.5825 -4.5920 9.6000 25 1 5.8163 -3.3093 7.6899 26 6 2.4435 -1.4338 7.2277 27 1 -0.3633 0.5193 0.8868 28 1 -0.3633 0.5082 -0.8932 29 1 -0.3632 -1.0276 0.0065 30 1 3.1400 1.4290 -0.0833 31 1 1.6285 1.9790 -0.8455 32 1 1.9725 2.9999 1.2863 33 1 2.9707 -0.2848 -1.6168 34 1 1.2974 -0.7834 -2.0231 35 1 3.1214 -2.6645 -1.2800 36 1 1.4383 -2.7695 -0.6628 37 1 3.9060 -1.5745 0.7142 38 1 2.6999 -2.7111 1.3912 39 1 1.5352 -0.1065 5.0586 40 1 3.7640 -3.2162 4.8181 41 1 3.3430 -3.3334 11.6508 42 1 1.8617 -0.6404 7.6730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326102271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:18 Heat of formation + Delta-G solvation = -25.068637 kcal Electronic energy + Delta-G solvation = -27761.569765 eV Core-core repulsion = 23744.140681 eV Total energy + Delta-G solvation = -4017.429084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92595 -40.12402 -38.79053 -37.36509 -36.31766 -34.56323 -33.44649 -32.15761 -31.44467 -30.70438 -28.54359 -26.90115 -25.74968 -25.08960 -23.89018 -22.20125 -21.50115 -20.49988 -19.90220 -18.73544 -18.07997 -17.51989 -17.12349 -16.57032 -16.19531 -16.18836 -15.38383 -15.01553 -14.68491 -14.48448 -14.00730 -13.95823 -13.61676 -13.58243 -13.42610 -13.19435 -12.90022 -12.70720 -12.52542 -12.41716 -12.19146 -11.86538 -11.85372 -11.41576 -11.09292 -10.99226 -10.92415 -10.77443 -10.65424 -10.18466 -10.05713 -10.02927 -9.38661 -8.99282 -8.69940 -8.67116 -8.30076 -7.36473 -7.05009 -4.49211 1.73723 2.46636 2.97688 3.43764 3.52094 3.63710 3.65502 3.89200 3.95060 4.06549 4.13722 4.26927 4.34192 4.45509 4.66865 4.81087 4.88192 4.94135 4.95427 5.09459 5.14664 5.29147 5.37214 5.41317 5.59666 5.64493 5.74936 5.87108 5.92850 5.95755 6.05906 6.09966 6.33625 6.54030 6.69389 6.78986 7.33545 7.35929 7.58413 7.61493 7.80479 8.00499 8.09338 8.28657 8.51659 8.91088 9.17109 10.08628 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027598 B = 0.002988 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.330591 B = 9368.424740 C =10015.813310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 C 0.069 3.931 4 O -0.531 6.531 5 C -0.123 4.123 6 C -0.135 4.135 7 C 0.096 3.904 8 N -0.588 5.588 9 C 0.525 3.475 10 O -0.482 6.482 11 C 0.491 3.509 12 O -0.523 6.523 13 N -0.589 5.589 14 C -0.059 4.059 15 C 0.008 3.992 16 N -0.353 5.353 17 N -0.146 5.146 18 C -0.380 4.380 19 H 0.114 0.886 20 C 0.041 3.959 21 N -0.828 5.828 22 Si 1.113 2.887 23 H -0.280 1.280 24 H -0.312 1.312 25 H -0.268 1.268 26 C -0.057 4.057 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.364 0.636 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.412 0.588 40 H 0.186 0.814 41 H 0.281 0.719 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 8.817 -24.131 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 C -0.011 4.011 4 O -0.334 6.334 5 C -0.161 4.161 6 C -0.173 4.173 7 C -0.026 4.026 8 N -0.324 5.324 9 C 0.307 3.693 10 O -0.354 6.354 11 C 0.272 3.728 12 O -0.400 6.400 13 N -0.232 5.232 14 C -0.164 4.164 15 C -0.165 4.165 16 N -0.188 5.188 17 N 0.089 4.911 18 C -0.512 4.512 19 H 0.132 0.868 20 C -0.175 4.175 21 N -0.454 5.454 22 Si 0.943 3.057 23 H -0.206 1.206 24 H -0.242 1.242 25 H -0.194 1.194 26 C -0.210 4.210 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.209 0.791 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.247 0.753 40 H 0.202 0.798 41 H 0.092 0.908 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.652 6.103 -23.172 24.108 hybrid contribution -1.882 2.914 -0.356 3.487 sum -4.533 9.017 -23.527 25.601 Atomic orbital electron populations 1.22103 0.93443 1.02276 1.03444 1.21097 0.95152 0.90561 0.85098 1.22559 0.97738 0.92695 0.88085 1.87046 1.80083 1.29051 1.37266 1.22691 1.01904 0.95887 0.95663 1.22855 1.02265 0.96254 0.95915 1.22637 0.94654 0.90167 0.95152 1.48183 1.50429 1.29989 1.03807 1.19698 0.82155 0.84937 0.82488 1.90773 1.36173 1.26085 1.82393 1.19846 0.83339 0.85963 0.83644 1.90575 1.38240 1.28243 1.82979 1.42145 1.48344 1.29376 1.03363 1.17151 1.12037 1.01126 0.86103 1.23723 1.00455 0.96133 0.96181 1.76456 1.25478 1.19671 0.97155 1.44699 1.26696 1.14343 1.05387 1.21132 1.26991 1.26231 0.76817 0.86816 1.26957 0.99059 0.93584 0.97852 1.70876 1.34517 1.34171 1.05882 0.82748 0.73046 0.77551 0.72393 1.20587 1.24195 1.19388 1.21362 1.09478 0.99716 0.90431 0.90081 0.92043 0.92493 0.93942 0.93256 0.79069 0.90308 0.89627 0.89596 0.90473 0.91242 0.87760 0.75300 0.79769 0.90789 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.28 37.16 0.31 -1.24 16 2 C 0.17 1.63 0.79 -130.84 -0.10 1.53 16 3 C 0.07 0.63 6.03 37.16 0.22 0.86 16 4 O -0.53 -6.16 9.34 -59.94 -0.56 -6.72 16 5 C -0.12 -0.83 6.01 -24.90 -0.15 -0.98 16 6 C -0.13 -1.00 7.08 -24.58 -0.17 -1.17 16 7 C 0.10 1.05 6.06 -2.53 -0.02 1.04 16 8 N -0.59 -7.41 2.82 -156.37 -0.44 -7.85 16 9 C 0.52 8.14 7.29 -11.66 -0.08 8.05 16 10 O -0.48 -7.98 12.13 -19.23 -0.23 -8.21 16 11 C 0.49 8.62 7.82 -11.66 -0.09 8.53 16 12 O -0.52 -9.83 10.92 5.45 0.06 -9.77 16 13 N -0.59 -10.68 5.45 -10.46 -0.06 -10.74 16 14 C -0.06 -1.28 6.90 -83.92 -0.58 -1.86 16 15 C 0.01 0.18 10.85 -17.02 -0.18 0.00 16 16 N -0.35 -9.29 7.33 30.81 0.23 -9.07 16 17 N -0.15 -3.80 3.61 -11.40 -0.04 -3.85 16 18 C -0.38 -10.22 10.55 -14.82 -0.16 -10.38 16 19 H 0.11 2.97 8.06 -52.49 -0.42 2.55 16 20 C 0.04 1.12 5.50 -17.50 -0.10 1.03 16 21 N -0.83 -22.76 13.68 55.50 0.76 -22.00 16 22 Si 1.11 27.84 26.25 -169.99 -4.46 23.37 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.31 -7.55 7.11 56.52 0.40 -7.14 16 25 H -0.27 -6.80 6.36 56.52 0.36 -6.44 16 26 C -0.06 -1.29 11.50 -16.38 -0.19 -1.48 16 27 H 0.08 1.05 6.46 -51.93 -0.34 0.72 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.37 8.06 -51.93 -0.42 -0.04 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.36 2.79 9.12 45.56 0.42 3.20 16 33 H 0.08 0.44 7.80 -51.93 -0.40 0.04 16 34 H 0.09 0.44 7.84 -51.93 -0.41 0.03 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.34 6.15 -51.93 -0.32 1.02 16 39 H 0.41 6.55 8.29 -40.82 -0.34 6.21 16 40 H 0.19 4.17 5.92 -52.49 -0.31 3.86 16 41 H 0.28 7.34 8.73 -40.82 -0.36 6.99 16 42 H 0.15 2.97 8.06 -52.49 -0.42 2.54 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.59 340.07 -5.61 -38.20 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.69 Total: 7.59 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.29 Total: 3.91 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.45 Total: -53.50 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.73 Total: -24.70 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.46 Total: 23.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.59 -5.61 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326102271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.135 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds