Wall clock time and date at job start Fri Apr 10 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.99900 * 2 1 4 4 O 1.42895 * 109.47251 * 64.63713 * 3 2 1 5 5 C 1.54314 * 109.98741 * 238.97428 * 2 1 3 6 6 C 1.55164 * 102.86078 * 263.04233 * 5 2 1 7 7 C 1.54909 * 101.58143 * 324.30620 * 6 5 2 8 8 N 1.47026 * 109.88671 * 121.09234 * 2 1 3 9 9 C 1.34776 * 125.64873 * 300.51885 * 8 2 1 10 10 O 1.21366 * 119.99717 * 359.70978 * 9 8 2 11 11 C 1.49299 * 119.99959 * 179.71427 * 9 8 2 12 12 O 1.21403 * 120.00192 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99959 * 179.97438 * 11 9 8 14 14 C 1.40304 * 120.00249 * 179.97438 * 13 11 9 15 15 C 1.40722 * 126.09424 * 0.02562 * 14 13 11 16 16 N 1.30880 * 108.37087 * 179.97438 * 15 14 13 17 17 N 1.40060 * 108.43559 * 0.02562 * 16 15 14 18 18 C 1.37300 * 126.05332 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00347 * 188.38756 * 18 17 16 20 20 C 1.39010 * 119.99985 * 8.38799 * 18 17 16 21 21 N 1.31282 * 120.00016 * 193.41030 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 13.40852 * 20 18 17 23 23 H 1.48504 * 109.46940 * 269.99923 * 22 20 18 24 24 H 1.48505 * 109.47172 * 150.00112 * 22 20 18 25 25 H 1.48500 * 109.47138 * 29.99966 * 22 20 18 26 26 C 1.35784 * 126.09820 * 180.30905 * 14 13 11 27 27 H 1.08998 * 109.46988 * 300.35551 * 1 2 3 28 28 H 1.08997 * 109.46895 * 60.35882 * 1 2 3 29 29 H 1.08996 * 109.46682 * 180.36100 * 1 2 3 30 30 H 1.08994 * 109.47362 * 184.64706 * 3 2 1 31 31 H 1.09003 * 109.46684 * 304.64588 * 3 2 1 32 32 H 0.96694 * 114.00594 * 180.02562 * 4 3 2 33 33 H 1.08998 * 110.92389 * 144.63176 * 5 2 1 34 34 H 1.08999 * 110.74291 * 21.37224 * 5 2 1 35 35 H 1.09001 * 111.00507 * 206.22737 * 6 5 2 36 36 H 1.09007 * 111.00138 * 82.38042 * 6 5 2 37 37 H 1.08998 * 110.35969 * 278.16457 * 7 6 5 38 38 H 1.08996 * 110.36173 * 155.84803 * 7 6 5 39 39 H 0.97005 * 120.00181 * 359.97438 * 13 11 9 40 40 H 1.07994 * 125.81766 * 359.97438 * 15 14 13 41 41 H 0.96999 * 120.00069 * 354.69999 * 21 20 18 42 42 H 1.07995 * 126.25360 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.6739 2.0828 1.2174 5 6 2.0575 -0.7475 -1.2427 6 6 2.3477 -2.1692 -0.6932 7 6 2.8524 -1.8529 0.7368 8 7 2.0301 -0.7140 1.1840 9 6 1.7743 -0.3852 2.4657 10 8 1.0804 0.5780 2.7182 11 6 2.3447 -1.2058 3.5749 12 8 3.0385 -2.1695 3.3224 13 7 2.0893 -0.8767 4.8567 14 6 2.6248 -1.6481 5.8992 15 6 3.4410 -2.7852 5.7542 16 7 3.7422 -3.2316 6.9471 17 7 3.1331 -2.4022 7.8972 18 6 3.2114 -2.5422 9.2608 19 1 2.5951 -1.9303 9.9028 20 6 4.0839 -3.4716 9.8151 21 7 3.9782 -3.7967 11.0826 22 14 5.4068 -4.2580 8.7563 23 1 4.8733 -5.4981 8.1376 24 1 6.5825 -4.5920 9.6000 25 1 5.8163 -3.3093 7.6899 26 6 2.4435 -1.4338 7.2277 27 1 -0.3633 0.5193 0.8868 28 1 -0.3633 0.5082 -0.8932 29 1 -0.3632 -1.0276 0.0065 30 1 3.1400 1.4290 -0.0833 31 1 1.6285 1.9790 -0.8455 32 1 1.9725 2.9999 1.2863 33 1 2.9707 -0.2848 -1.6168 34 1 1.2974 -0.7834 -2.0231 35 1 3.1214 -2.6645 -1.2800 36 1 1.4383 -2.7695 -0.6628 37 1 3.9060 -1.5745 0.7142 38 1 2.6999 -2.7111 1.3912 39 1 1.5352 -0.1065 5.0586 40 1 3.7640 -3.2162 4.8181 41 1 3.3430 -3.3334 11.6508 42 1 1.8617 -0.6404 7.6730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326102271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:17 Heat of formation + Delta-G solvation = -48.719930 kcal Electronic energy + Delta-G solvation = -27762.595362 eV Core-core repulsion = 23744.140681 eV Total energy + Delta-G solvation = -4018.454681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28241 -41.63858 -40.10782 -38.54413 -37.11461 -36.22902 -35.29927 -33.06224 -32.64868 -32.21629 -30.34292 -27.63019 -27.13830 -26.16111 -25.36597 -23.36359 -22.87162 -21.88520 -21.62703 -20.08986 -19.70789 -18.57783 -18.13633 -17.96908 -17.54737 -17.26854 -16.74363 -16.45775 -16.00379 -15.55478 -15.44838 -15.37933 -15.31482 -14.96187 -14.58601 -14.42654 -14.27034 -13.85722 -13.60626 -13.42342 -13.30631 -13.02243 -12.93786 -12.65800 -12.57099 -12.40907 -12.05918 -11.96670 -11.84669 -11.63172 -11.52256 -11.36504 -10.77826 -10.67643 -10.31724 -10.27110 -9.65876 -9.41207 -8.83594 -6.53141 0.38074 1.09132 1.26656 1.48285 1.64537 1.89080 1.94093 2.15657 2.30775 2.46188 2.64557 2.88375 3.30648 3.39890 3.66120 3.78533 4.00839 4.17843 4.22500 4.25191 4.26092 4.47584 4.49197 4.59736 4.69302 4.77161 4.81353 4.85895 4.92769 4.95214 5.03490 5.12606 5.16804 5.28104 5.31772 5.34602 5.51507 5.73633 6.03049 6.21993 6.33008 6.41933 6.84805 6.98556 6.99733 7.10297 7.22943 8.05943 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027598 B = 0.002988 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.330591 B = 9368.424740 C =10015.813310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.153 3.847 3 C 0.065 3.935 4 O -0.561 6.561 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.088 3.912 8 N -0.583 5.583 9 C 0.525 3.475 10 O -0.496 6.496 11 C 0.491 3.509 12 O -0.534 6.534 13 N -0.589 5.589 14 C -0.044 4.044 15 C -0.001 4.001 16 N -0.378 5.378 17 N -0.177 5.177 18 C -0.396 4.396 19 H 0.114 0.886 20 C 0.012 3.988 21 N -0.854 5.854 22 Si 1.143 2.857 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.277 1.277 26 C -0.042 4.042 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.377 0.623 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.424 0.576 40 H 0.194 0.806 41 H 0.281 0.719 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 9.899 -27.737 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 C -0.013 4.013 4 O -0.367 6.367 5 C -0.151 4.151 6 C -0.163 4.163 7 C -0.034 4.034 8 N -0.318 5.318 9 C 0.306 3.694 10 O -0.370 6.370 11 C 0.273 3.727 12 O -0.412 6.412 13 N -0.235 5.235 14 C -0.149 4.149 15 C -0.175 4.175 16 N -0.212 5.212 17 N 0.056 4.944 18 C -0.527 4.527 19 H 0.131 0.869 20 C -0.200 4.200 21 N -0.483 5.483 22 Si 0.972 3.028 23 H -0.212 1.212 24 H -0.232 1.232 25 H -0.204 1.204 26 C -0.195 4.195 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.225 0.775 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.261 0.739 40 H 0.211 0.789 41 H 0.092 0.908 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.043 7.199 -26.795 27.912 hybrid contribution -1.848 2.690 0.452 3.295 sum -4.891 9.890 -26.343 28.560 Atomic orbital electron populations 1.22052 0.93647 1.01991 1.03103 1.21535 0.95152 0.91345 0.85067 1.22693 0.98127 0.92308 0.88207 1.86996 1.80581 1.30373 1.38708 1.22737 1.03329 0.94505 0.94481 1.22839 1.02882 0.97093 0.93490 1.22749 0.94747 0.88800 0.97107 1.48318 1.49617 1.30339 1.03569 1.19235 0.82452 0.84663 0.83043 1.90778 1.36953 1.26505 1.82718 1.20464 0.82501 0.85754 0.83964 1.90570 1.38495 1.28799 1.83320 1.42120 1.48837 1.29606 1.02907 1.17215 1.10523 1.00328 0.86872 1.24012 1.00738 0.96833 0.95870 1.76356 1.26138 1.20706 0.98024 1.44716 1.28766 1.15809 1.05140 1.21092 1.27371 1.26694 0.77494 0.86877 1.27491 1.00008 0.94228 0.98237 1.70881 1.35731 1.35401 1.06271 0.82323 0.72434 0.76602 0.71460 1.21169 1.23230 1.20402 1.22037 1.07625 0.99152 0.90678 0.93383 0.89412 0.92683 0.93543 0.90558 0.77512 0.88584 0.87203 0.87260 0.90420 0.91127 0.90125 0.73880 0.78930 0.90814 0.79462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.28 71.98 0.60 -2.05 16 2 C 0.15 2.56 0.79 3.95 0.00 2.56 16 3 C 0.07 1.01 6.03 71.98 0.43 1.44 16 4 O -0.56 -12.05 9.34 -125.35 -1.17 -13.23 16 5 C -0.11 -1.02 6.01 31.78 0.19 -0.83 16 6 C -0.13 -1.42 7.08 31.99 0.23 -1.20 16 7 C 0.09 1.77 6.06 86.86 0.53 2.29 16 8 N -0.58 -13.68 2.82 -767.00 -2.16 -15.84 16 9 C 0.52 15.71 7.29 87.22 0.64 16.34 16 10 O -0.50 -15.95 12.13 20.33 0.25 -15.71 16 11 C 0.49 16.78 7.82 87.22 0.68 17.46 16 12 O -0.53 -19.71 10.92 -3.41 -0.04 -19.75 16 13 N -0.59 -20.61 5.45 -305.33 -1.66 -22.27 16 14 C -0.04 -1.85 6.90 37.82 0.26 -1.59 16 15 C 0.00 -0.03 10.85 85.44 0.93 0.89 16 16 N -0.38 -19.89 7.33 -56.44 -0.41 -20.31 16 17 N -0.18 -9.21 3.61 -189.98 -0.69 -9.90 16 18 C -0.40 -21.56 10.55 84.02 0.89 -20.67 16 19 H 0.11 6.00 8.06 -2.91 -0.02 5.97 16 20 C 0.01 0.65 5.50 84.96 0.47 1.11 16 21 N -0.85 -47.86 13.68 21.67 0.30 -47.56 16 22 Si 1.14 57.41 26.25 68.60 1.80 59.21 16 23 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.28 -14.17 6.36 99.48 0.63 -13.54 16 26 C -0.04 -1.87 11.50 83.41 0.96 -0.91 16 27 H 0.05 1.19 6.46 -2.39 -0.02 1.17 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.67 8.06 -2.39 -0.02 0.66 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.38 5.23 9.12 -74.06 -0.68 4.55 16 33 H 0.10 0.60 7.80 -2.39 -0.02 0.58 16 34 H 0.11 0.54 7.84 -2.39 -0.02 0.52 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 2.02 6.15 -2.39 -0.01 2.00 16 39 H 0.42 12.82 8.29 -92.70 -0.77 12.05 16 40 H 0.19 8.64 5.92 -2.91 -0.02 8.62 16 41 H 0.28 15.06 8.73 -92.71 -0.81 14.25 16 42 H 0.19 6.77 8.06 -2.91 -0.02 6.75 16 Total: -1.00 -71.07 340.07 2.53 -68.54 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.47 Total: 21.94 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.79 Total: 14.86 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.63 Total: -115.88 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.96 Total: -48.68 kcal Atomic # 14 Polarization: 57.41 SS G_CDS: 1.80 Total: 59.21 kcal Total: -71.07 2.53 -68.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326102271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.823 kcal (2) G-P(sol) polarization free energy of solvation -71.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds