Wall clock time and date at job start Fri Apr 10 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.99477 * 2 1 4 4 O 1.42901 * 109.47311 * 300.35470 * 3 2 1 5 5 C 1.54320 * 109.88024 * 121.09549 * 2 1 3 6 6 C 1.55161 * 102.94339 * 97.22664 * 5 2 1 7 7 C 1.54691 * 101.67568 * 35.33351 * 6 5 2 8 8 N 1.47022 * 109.88323 * 238.90435 * 2 1 3 9 9 C 1.34771 * 125.64716 * 59.48450 * 8 2 1 10 10 O 1.21369 * 120.00115 * 359.97438 * 9 8 2 11 11 C 1.49314 * 120.00207 * 179.97438 * 9 8 2 12 12 O 1.21409 * 119.99297 * 0.02562 * 11 9 8 13 13 N 1.34771 * 120.00207 * 179.97438 * 11 9 8 14 14 C 1.40295 * 119.99760 * 180.02562 * 13 11 9 15 15 C 1.40727 * 126.10335 * 0.13992 * 14 13 11 16 16 N 1.30876 * 108.37651 * 180.30361 * 15 14 13 17 17 N 1.40063 * 108.43314 * 359.74418 * 16 15 14 18 18 C 1.37296 * 126.05032 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99946 * 179.97438 * 18 17 16 20 20 C 1.39004 * 120.00251 * 359.97339 * 18 17 16 21 21 N 1.31279 * 120.00180 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47298 * 120.00273 * 22 20 18 25 25 H 1.48501 * 109.47539 * 240.00598 * 22 20 18 26 26 C 1.35787 * 126.09745 * 179.97438 * 14 13 11 27 27 H 1.09004 * 109.46739 * 179.64286 * 1 2 3 28 28 H 1.09002 * 109.47241 * 299.63873 * 1 2 3 29 29 H 1.09000 * 109.47593 * 59.64314 * 1 2 3 30 30 H 1.09002 * 109.47080 * 60.36031 * 3 2 1 31 31 H 1.09000 * 109.46530 * 180.35850 * 3 2 1 32 32 H 0.96693 * 113.99747 * 179.97438 * 4 3 2 33 33 H 1.09004 * 110.72088 * 215.58936 * 5 2 1 34 34 H 1.09000 * 110.72322 * 338.86061 * 5 2 1 35 35 H 1.09002 * 111.00368 * 153.57161 * 6 5 2 36 36 H 1.08992 * 111.00193 * 277.38838 * 6 5 2 37 37 H 1.09001 * 110.39304 * 204.36601 * 7 6 5 38 38 H 1.09001 * 110.23646 * 82.10890 * 7 6 5 39 39 H 0.96993 * 120.00088 * 0.02562 * 13 11 9 40 40 H 1.07995 * 125.80851 * 0.02810 * 15 14 13 41 41 H 0.96999 * 120.00379 * 179.97438 * 21 20 18 42 42 H 1.08002 * 126.25482 * 359.97297 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5763 2.1183 -1.1626 5 6 2.0548 -0.7495 1.2427 6 6 2.3519 -2.1695 0.6924 7 6 2.8523 -1.8530 -0.7367 8 7 2.0300 -0.7141 -1.1839 9 6 1.7742 -0.3853 -2.4656 10 8 1.0757 0.5746 -2.7181 11 6 2.3502 -1.2019 -3.5751 12 8 3.0486 -2.1623 -3.3224 13 7 2.0939 -0.8734 -4.8568 14 6 2.6347 -1.6411 -5.8992 15 6 3.4547 -2.7755 -5.7544 16 7 3.7652 -3.2152 -6.9473 17 7 3.1543 -2.3870 -7.8974 18 6 3.2405 -2.5214 -9.2611 19 1 2.7267 -1.8238 -9.9060 20 6 3.9889 -3.5552 -9.8117 21 7 4.6130 -4.4035 -9.0279 22 14 4.1055 -3.7385 -11.6670 23 1 3.3169 -2.6635 -12.3212 24 1 5.5263 -3.6346 -12.0864 25 1 3.5665 -5.0627 -12.0686 26 6 2.4577 -1.4237 -7.2278 27 1 -0.3633 -1.0277 -0.0064 28 1 -0.3634 0.5082 0.8932 29 1 -0.3634 0.5194 -0.8867 30 1 1.6998 1.9530 0.8932 31 1 3.1431 1.4277 -0.0064 32 1 1.8693 3.0374 -1.2282 33 1 2.9656 -0.2831 1.6183 34 1 1.2917 -0.7890 2.0201 35 1 3.1270 -2.6618 1.2796 36 1 1.4453 -2.7738 0.6610 37 1 2.6998 -2.7112 -1.3913 38 1 3.9059 -1.5745 -0.7142 39 1 1.5357 -0.1063 -5.0586 40 1 3.7769 -3.2069 -4.8182 41 1 5.1350 -5.1252 -9.4121 42 1 1.8758 -0.6304 -7.6733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326102273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:23 Heat of formation + Delta-G solvation = -15.619980 kcal Electronic energy + Delta-G solvation = -27615.558637 eV Core-core repulsion = 23598.539278 eV Total energy + Delta-G solvation = -4017.019359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78944 -39.75772 -38.54577 -37.23678 -36.25961 -34.34172 -33.16593 -32.04887 -31.36698 -30.28231 -27.99512 -26.84489 -25.67606 -25.12921 -24.05908 -22.09378 -21.18901 -20.56564 -19.43179 -18.64220 -17.59571 -17.36027 -17.00029 -16.42791 -16.05240 -15.49465 -15.19964 -15.11446 -14.67892 -14.40885 -14.02220 -13.73444 -13.65773 -13.46004 -13.15614 -12.94813 -12.75075 -12.63802 -12.46994 -12.09572 -11.77418 -11.70221 -11.58657 -11.30313 -11.27705 -11.02898 -10.90957 -10.83886 -10.52361 -10.51185 -10.22590 -9.99371 -9.20166 -8.88381 -8.77631 -8.58179 -8.09286 -6.72758 -6.57897 -4.24655 1.88289 2.59604 2.94833 3.05430 3.11130 3.43867 3.74441 3.80000 3.90309 4.03549 4.31831 4.42034 4.52524 4.66952 4.77904 4.91388 5.00765 5.01126 5.09985 5.14612 5.22816 5.36207 5.44747 5.47759 5.67202 5.71875 5.83623 5.97145 6.00952 6.18399 6.24620 6.40742 6.43924 6.82931 6.92434 7.03296 7.20038 7.46463 7.64716 7.81478 7.96466 8.23003 8.27317 8.57592 8.76068 9.34853 9.63604 10.38053 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.002693 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.016035 B =10393.978698 C =11008.083774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 C 0.070 3.930 4 O -0.532 6.532 5 C -0.123 4.123 6 C -0.135 4.135 7 C 0.097 3.903 8 N -0.589 5.589 9 C 0.524 3.476 10 O -0.486 6.486 11 C 0.487 3.513 12 O -0.523 6.523 13 N -0.586 5.586 14 C -0.066 4.066 15 C -0.028 4.028 16 N -0.261 5.261 17 N -0.140 5.140 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.078 4.078 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.364 0.636 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.408 0.592 40 H 0.177 0.823 41 H 0.275 0.725 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 8.524 18.414 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 C -0.010 4.010 4 O -0.335 6.335 5 C -0.161 4.161 6 C -0.173 4.173 7 C -0.025 4.025 8 N -0.325 5.325 9 C 0.306 3.694 10 O -0.358 6.358 11 C 0.268 3.732 12 O -0.401 6.401 13 N -0.229 5.229 14 C -0.172 4.172 15 C -0.204 4.204 16 N -0.091 5.091 17 N 0.093 4.907 18 C -0.454 4.454 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.395 5.395 22 Si 0.759 3.241 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.229 4.229 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.243 0.757 40 H 0.194 0.806 41 H 0.085 0.915 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.155 6.724 17.553 19.250 hybrid contribution -0.326 1.539 -0.217 1.588 sum -4.481 8.263 17.336 19.720 Atomic orbital electron populations 1.22086 0.93463 1.02166 1.03453 1.21088 0.95225 0.90523 0.85135 1.22530 0.97142 0.92383 0.88912 1.87004 1.75925 1.27897 1.42701 1.22684 1.01842 0.95892 0.95684 1.22814 1.02258 0.96247 0.95974 1.22585 0.94644 0.90234 0.95085 1.48206 1.50480 1.29988 1.03840 1.19833 0.82081 0.84928 0.82531 1.90774 1.36117 1.26416 1.82501 1.19778 0.83705 0.86083 0.83655 1.90585 1.38201 1.28364 1.82928 1.42145 1.47736 1.29544 1.03468 1.17268 1.12622 1.01392 0.85931 1.24134 1.01920 0.96598 0.97706 1.78247 1.20337 1.15847 0.94713 1.44555 1.25941 1.14801 1.05409 1.19957 1.33023 1.15133 0.77283 0.86451 1.25657 0.95230 0.95074 1.01163 1.70216 1.22460 1.11283 1.35524 0.85750 0.78768 0.79031 0.80519 1.18643 1.19896 1.19886 1.21307 1.09788 1.01247 0.90567 0.92581 0.92146 0.89985 0.93300 0.93925 0.79016 0.90369 0.89649 0.89610 0.90519 0.87721 0.91298 0.75667 0.80592 0.91468 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.23 37.16 0.31 -1.36 16 2 C 0.17 1.76 0.79 -130.84 -0.10 1.65 16 3 C 0.07 0.69 5.99 37.16 0.22 0.91 16 4 O -0.53 -6.50 9.42 -59.68 -0.56 -7.07 16 5 C -0.12 -0.91 6.02 -24.90 -0.15 -1.06 16 6 C -0.13 -1.11 7.07 -24.70 -0.17 -1.28 16 7 C 0.10 1.16 6.04 -2.65 -0.02 1.14 16 8 N -0.59 -8.01 2.82 -156.50 -0.44 -8.45 16 9 C 0.52 8.71 7.37 -11.65 -0.09 8.63 16 10 O -0.49 -8.54 12.22 -18.97 -0.23 -8.77 16 11 C 0.49 9.27 7.82 -11.65 -0.09 9.18 16 12 O -0.52 -10.74 10.93 5.45 0.06 -10.68 16 13 N -0.59 -11.55 5.45 -10.45 -0.06 -11.61 16 14 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 15 C -0.03 -0.73 10.85 -17.02 -0.18 -0.92 16 16 N -0.26 -7.55 10.39 30.81 0.32 -7.23 16 17 N -0.14 -3.86 3.73 -11.40 -0.04 -3.90 16 18 C -0.32 -8.52 10.25 -14.82 -0.15 -8.67 16 19 H 0.12 2.79 7.83 -52.48 -0.41 2.38 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -21.35 11.81 55.50 0.66 -20.69 16 22 Si 0.94 18.89 29.55 -169.99 -5.02 13.87 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.08 -1.87 11.50 -16.38 -0.19 -2.06 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.14 6.33 -51.93 -0.33 0.81 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.36 2.98 9.12 45.56 0.42 3.40 16 33 H 0.08 0.49 7.85 -51.93 -0.41 0.09 16 34 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.48 6.17 -51.93 -0.32 1.16 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.41 7.07 8.29 -40.82 -0.34 6.73 16 40 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.15 3.00 8.06 -52.49 -0.42 2.57 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -34.05 344.66 -6.05 -40.09 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -4.62 Total: 14.13 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.29 Total: 5.12 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.43 Total: -51.88 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.73 Total: -26.51 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.05 -6.05 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326102273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.473 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds