Wall clock time and date at job start Fri Apr 10 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.99477 * 2 1 4 4 O 1.42901 * 109.47311 * 300.35470 * 3 2 1 5 5 C 1.54320 * 109.88024 * 121.09549 * 2 1 3 6 6 C 1.55161 * 102.94339 * 97.22664 * 5 2 1 7 7 C 1.54691 * 101.67568 * 35.33351 * 6 5 2 8 8 N 1.47022 * 109.88323 * 238.90435 * 2 1 3 9 9 C 1.34771 * 125.64716 * 59.48450 * 8 2 1 10 10 O 1.21369 * 120.00115 * 359.97438 * 9 8 2 11 11 C 1.49314 * 120.00207 * 179.97438 * 9 8 2 12 12 O 1.21409 * 119.99297 * 0.02562 * 11 9 8 13 13 N 1.34771 * 120.00207 * 179.97438 * 11 9 8 14 14 C 1.40295 * 119.99760 * 180.02562 * 13 11 9 15 15 C 1.40727 * 126.10335 * 0.13992 * 14 13 11 16 16 N 1.30876 * 108.37651 * 180.30361 * 15 14 13 17 17 N 1.40063 * 108.43314 * 359.74418 * 16 15 14 18 18 C 1.37296 * 126.05032 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99946 * 179.97438 * 18 17 16 20 20 C 1.39004 * 120.00251 * 359.97339 * 18 17 16 21 21 N 1.31279 * 120.00180 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47298 * 120.00273 * 22 20 18 25 25 H 1.48501 * 109.47539 * 240.00598 * 22 20 18 26 26 C 1.35787 * 126.09745 * 179.97438 * 14 13 11 27 27 H 1.09004 * 109.46739 * 179.64286 * 1 2 3 28 28 H 1.09002 * 109.47241 * 299.63873 * 1 2 3 29 29 H 1.09000 * 109.47593 * 59.64314 * 1 2 3 30 30 H 1.09002 * 109.47080 * 60.36031 * 3 2 1 31 31 H 1.09000 * 109.46530 * 180.35850 * 3 2 1 32 32 H 0.96693 * 113.99747 * 179.97438 * 4 3 2 33 33 H 1.09004 * 110.72088 * 215.58936 * 5 2 1 34 34 H 1.09000 * 110.72322 * 338.86061 * 5 2 1 35 35 H 1.09002 * 111.00368 * 153.57161 * 6 5 2 36 36 H 1.08992 * 111.00193 * 277.38838 * 6 5 2 37 37 H 1.09001 * 110.39304 * 204.36601 * 7 6 5 38 38 H 1.09001 * 110.23646 * 82.10890 * 7 6 5 39 39 H 0.96993 * 120.00088 * 0.02562 * 13 11 9 40 40 H 1.07995 * 125.80851 * 0.02810 * 15 14 13 41 41 H 0.96999 * 120.00379 * 179.97438 * 21 20 18 42 42 H 1.08002 * 126.25482 * 359.97297 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5763 2.1183 -1.1626 5 6 2.0548 -0.7495 1.2427 6 6 2.3519 -2.1695 0.6924 7 6 2.8523 -1.8530 -0.7367 8 7 2.0300 -0.7141 -1.1839 9 6 1.7742 -0.3853 -2.4656 10 8 1.0757 0.5746 -2.7181 11 6 2.3502 -1.2019 -3.5751 12 8 3.0486 -2.1623 -3.3224 13 7 2.0939 -0.8734 -4.8568 14 6 2.6347 -1.6411 -5.8992 15 6 3.4547 -2.7755 -5.7544 16 7 3.7652 -3.2152 -6.9473 17 7 3.1543 -2.3870 -7.8974 18 6 3.2405 -2.5214 -9.2611 19 1 2.7267 -1.8238 -9.9060 20 6 3.9889 -3.5552 -9.8117 21 7 4.6130 -4.4035 -9.0279 22 14 4.1055 -3.7385 -11.6670 23 1 3.3169 -2.6635 -12.3212 24 1 5.5263 -3.6346 -12.0864 25 1 3.5665 -5.0627 -12.0686 26 6 2.4577 -1.4237 -7.2278 27 1 -0.3633 -1.0277 -0.0064 28 1 -0.3634 0.5082 0.8932 29 1 -0.3634 0.5194 -0.8867 30 1 1.6998 1.9530 0.8932 31 1 3.1431 1.4277 -0.0064 32 1 1.8693 3.0374 -1.2282 33 1 2.9656 -0.2831 1.6183 34 1 1.2917 -0.7890 2.0201 35 1 3.1270 -2.6618 1.2796 36 1 1.4453 -2.7738 0.6610 37 1 2.6998 -2.7112 -1.3913 38 1 3.9059 -1.5745 -0.7142 39 1 1.5357 -0.1063 -5.0586 40 1 3.7769 -3.2069 -4.8182 41 1 5.1350 -5.1252 -9.4121 42 1 1.8758 -0.6304 -7.6733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326102273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:22 Heat of formation + Delta-G solvation = -40.880685 kcal Electronic energy + Delta-G solvation = -27616.654024 eV Core-core repulsion = 23598.539278 eV Total energy + Delta-G solvation = -4018.114746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11395 -41.43078 -40.00388 -38.53429 -37.12081 -36.06584 -35.01229 -33.04278 -32.29369 -32.22586 -29.87120 -27.64433 -27.28917 -26.27196 -25.45917 -23.15056 -22.88609 -21.93415 -21.27255 -19.87579 -19.33341 -18.50630 -18.02484 -17.53126 -17.45626 -17.24909 -16.74514 -16.49075 -15.91454 -15.53426 -15.43286 -15.29247 -14.96850 -14.85131 -14.56755 -14.29382 -13.84857 -13.52344 -13.43533 -13.36795 -13.32637 -12.99863 -12.93762 -12.90684 -12.54571 -12.33947 -12.03093 -11.99237 -11.85709 -11.64047 -11.51297 -11.07843 -10.87947 -10.78123 -10.25388 -10.14515 -9.67011 -8.61617 -8.49374 -6.26918 0.42500 1.28898 1.30669 1.41830 1.59742 1.73280 2.10636 2.11344 2.51469 2.57337 2.87927 3.07010 3.30330 3.45486 3.67558 3.78183 4.02648 4.20968 4.24306 4.38807 4.46666 4.49664 4.51948 4.59192 4.68814 4.86297 4.92926 4.95348 4.96211 4.97808 5.04493 5.12707 5.22388 5.27611 5.30165 5.36841 5.53469 5.91242 6.17168 6.29263 6.47124 6.67552 6.90683 7.01306 7.15503 7.40795 7.62241 8.50124 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.002693 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.016035 B =10393.978698 C =11008.083774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 C 0.067 3.933 4 O -0.562 6.562 5 C -0.111 4.111 6 C -0.125 4.125 7 C 0.088 3.912 8 N -0.584 5.584 9 C 0.525 3.475 10 O -0.497 6.497 11 C 0.484 3.516 12 O -0.539 6.539 13 N -0.586 5.586 14 C -0.055 4.055 15 C -0.048 4.048 16 N -0.307 5.307 17 N -0.163 5.163 18 C -0.353 4.353 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.021 2.979 23 H -0.242 1.242 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.077 4.077 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.379 0.621 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.421 0.579 40 H 0.175 0.825 41 H 0.278 0.722 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 9.947 19.790 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 C -0.012 4.012 4 O -0.368 6.368 5 C -0.149 4.149 6 C -0.162 4.162 7 C -0.034 4.034 8 N -0.319 5.319 9 C 0.306 3.694 10 O -0.371 6.371 11 C 0.266 3.734 12 O -0.417 6.417 13 N -0.231 5.231 14 C -0.161 4.161 15 C -0.224 4.224 16 N -0.138 5.138 17 N 0.069 4.931 18 C -0.484 4.484 19 H 0.158 0.842 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.839 3.161 23 H -0.165 1.165 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.228 4.228 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.258 0.742 40 H 0.192 0.808 41 H 0.088 0.912 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.963 8.183 18.994 21.269 hybrid contribution -0.110 1.149 -0.453 1.240 sum -5.074 9.331 18.540 21.367 Atomic orbital electron populations 1.22031 0.93587 1.01873 1.03171 1.21559 0.95290 0.91375 0.84994 1.22658 0.97203 0.91902 0.89416 1.86956 1.76475 1.29281 1.44050 1.22737 1.03375 0.94340 0.94464 1.22797 1.02902 0.97232 0.93319 1.22685 0.94729 0.88791 0.97175 1.48337 1.49627 1.30331 1.03608 1.19278 0.82390 0.84626 0.83061 1.90775 1.36823 1.26734 1.82812 1.20491 0.82877 0.85881 0.84107 1.90582 1.38657 1.29132 1.83353 1.42103 1.48190 1.29746 1.03041 1.17326 1.11250 1.00554 0.86972 1.24223 1.03083 0.97904 0.97159 1.78144 1.22138 1.17710 0.95856 1.44843 1.26870 1.15558 1.05876 1.20694 1.33989 1.16334 0.77397 0.84169 1.26890 0.94023 0.94047 1.06772 1.70381 1.23828 1.12350 1.38272 0.84517 0.78886 0.79394 0.73279 1.16479 1.19655 1.19657 1.21974 1.09006 1.01150 0.90663 0.92814 0.89333 0.93339 0.90200 0.93848 0.77383 0.88535 0.87017 0.87184 0.90444 0.90487 0.91295 0.74207 0.80795 0.91232 0.79690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.23 71.98 0.59 -2.32 16 2 C 0.15 2.86 0.79 3.95 0.00 2.86 16 3 C 0.07 1.16 5.99 71.98 0.43 1.59 16 4 O -0.56 -13.00 9.42 -125.60 -1.18 -14.19 16 5 C -0.11 -1.21 6.02 31.78 0.19 -1.02 16 6 C -0.12 -1.71 7.07 31.91 0.23 -1.48 16 7 C 0.09 2.05 6.04 86.78 0.52 2.58 16 8 N -0.58 -15.39 2.82 -767.40 -2.16 -17.56 16 9 C 0.53 17.48 7.37 87.23 0.64 18.12 16 10 O -0.50 -17.42 12.22 20.07 0.25 -17.18 16 11 C 0.48 18.80 7.82 87.23 0.68 19.49 16 12 O -0.54 -22.91 10.93 -3.43 -0.04 -22.94 16 13 N -0.59 -23.30 5.45 -305.32 -1.66 -24.96 16 14 C -0.05 -2.63 6.90 37.83 0.26 -2.37 16 15 C -0.05 -2.65 10.85 85.44 0.93 -1.72 16 16 N -0.31 -18.53 10.39 -56.43 -0.59 -19.12 16 17 N -0.16 -9.19 3.73 -189.97 -0.71 -9.90 16 18 C -0.35 -18.84 10.25 84.02 0.86 -17.98 16 19 H 0.14 6.53 7.83 -2.91 -0.02 6.50 16 20 C -0.01 -0.27 5.50 84.96 0.47 0.19 16 21 N -0.82 -47.15 11.81 21.66 0.26 -46.89 16 22 Si 1.02 38.62 29.55 68.60 2.03 40.65 16 23 H -0.24 -8.25 7.11 99.48 0.71 -7.55 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 26 C -0.08 -3.71 11.50 83.41 0.96 -2.76 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.30 6.33 -2.39 -0.02 1.28 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.38 5.75 9.12 -74.06 -0.68 5.07 16 33 H 0.10 0.76 7.85 -2.38 -0.02 0.74 16 34 H 0.11 0.72 7.83 -2.39 -0.02 0.70 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 2.23 6.17 -2.39 -0.01 2.22 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.42 14.48 8.29 -92.71 -0.77 13.71 16 40 H 0.18 9.34 5.92 -2.91 -0.02 9.32 16 41 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.19 7.22 8.06 -2.91 -0.02 7.20 16 Total: -1.00 -77.77 344.66 2.59 -75.18 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -0.36 Total: 41.73 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.77 Total: 15.18 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.87 Total: -118.43 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.98 Total: -54.31 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -77.77 2.59 -75.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326102273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.298 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds