Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35209 * 126.06004 * 2 1 4 4 C 1.40461 * 107.87038 * 179.97438 * 3 2 1 5 5 N 1.39931 * 125.98180 * 179.97438 * 4 3 2 6 6 C 1.34769 * 119.99959 * 359.97438 * 5 4 3 7 7 O 1.21379 * 120.00381 * 0.02562 * 6 5 4 8 8 C 1.49351 * 119.99682 * 180.02562 * 6 5 4 9 9 O 1.21358 * 120.00081 * 359.97438 * 8 6 5 10 10 N 1.34772 * 119.99939 * 180.02562 * 8 6 5 11 11 C 1.46501 * 120.00042 * 179.97438 * 10 8 6 12 12 H 1.09000 * 112.90742 * 23.74973 * 11 10 8 13 13 C 1.53787 * 113.61128 * 154.99929 * 11 10 8 14 14 C 1.53784 * 87.07923 * 139.98386 * 13 11 10 15 15 H 1.09004 * 113.61162 * 220.01809 * 14 13 11 16 16 O 1.42900 * 113.61305 * 89.11533 * 14 13 11 17 17 C 1.53779 * 87.08045 * 334.56667 * 14 13 11 18 18 N 1.31276 * 108.03511 * 0.26502 * 4 3 2 19 19 N 1.34988 * 126.06382 * 179.97438 * 2 1 3 20 20 C 1.46503 * 125.97113 * 0.02562 * 19 2 1 21 21 C 1.50698 * 109.47098 * 89.99413 * 20 19 2 22 22 H 1.07993 * 120.00205 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99655 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00415 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47128 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46719 * 120.00225 * 25 23 21 28 28 H 1.48499 * 109.47238 * 240.00012 * 25 23 21 29 29 H 1.08996 * 109.47225 * 90.03048 * 1 2 3 30 30 H 1.09009 * 109.46804 * 210.02585 * 1 2 3 31 31 H 1.09000 * 109.47571 * 330.02045 * 1 2 3 32 32 H 1.08002 * 126.06843 * 359.96747 * 3 2 1 33 33 H 0.97001 * 119.99605 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99829 * 359.97438 * 10 8 6 35 35 H 1.09004 * 113.61202 * 254.53139 * 13 11 10 36 36 H 1.08994 * 113.61447 * 25.43570 * 13 11 10 37 37 H 0.96701 * 113.99636 * 180.02562 * 16 14 13 38 38 H 1.09006 * 113.61307 * 270.88660 * 17 14 13 39 39 H 1.08999 * 113.69146 * 139.99146 * 17 14 13 40 40 H 1.08992 * 109.46865 * 209.99617 * 20 19 2 41 41 H 1.09005 * 109.46638 * 329.99411 * 20 19 2 42 42 H 0.97001 * 120.00435 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0930 0.0000 4 6 3.6373 0.6546 0.0006 5 7 4.7718 1.4737 0.0003 6 6 4.6350 2.8144 -0.0012 7 8 3.5276 3.3115 -0.0018 8 6 5.8459 3.6886 -0.0021 9 8 6.9531 3.1916 -0.0010 10 7 5.7091 5.0293 -0.0031 11 6 6.8969 5.8869 -0.0034 12 1 7.7789 5.3898 -0.4072 13 6 6.6489 7.2824 -0.5999 14 6 7.5408 7.8352 0.5244 15 1 7.1768 8.7700 0.9507 16 8 8.9279 7.8818 0.1840 17 6 7.1480 6.5920 1.3399 18 7 3.6338 -0.6582 -0.0048 19 7 2.3017 -1.0912 0.0005 20 6 1.8498 -2.4848 0.0006 21 6 1.6952 -2.9628 -1.4202 22 1 1.9115 -2.2953 -2.2411 23 6 1.2777 -4.2525 -1.6720 24 7 1.0138 -5.0653 -0.6723 25 14 1.0854 -4.8449 -3.4331 26 1 1.4414 -3.7462 -4.3666 27 1 1.9849 -6.0033 -3.6667 28 1 -0.3223 -5.2564 -3.6661 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5135 32 1 1.9714 2.1209 -0.0005 33 1 5.6568 1.0764 0.0004 34 1 4.8241 5.4265 -0.0035 35 1 7.0713 7.4127 -1.5963 36 1 5.6107 7.6075 -0.5334 37 1 9.4939 8.2282 0.8874 38 1 6.2461 6.7284 1.9368 39 1 7.9724 6.1640 1.9103 40 1 2.5841 -3.1047 0.5147 41 1 0.8910 -2.5557 0.5142 42 1 0.7197 -5.9726 -0.8495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328325581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -12.948362 kcal Electronic energy + Delta-G solvation = -26067.789115 eV Core-core repulsion = 22050.885606 eV Total energy + Delta-G solvation = -4016.903509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19394 -40.52785 -39.60474 -38.29911 -35.87203 -35.04849 -33.45452 -33.06646 -31.52623 -30.91685 -27.23182 -26.45740 -26.29805 -26.02423 -24.01411 -22.75487 -21.11879 -20.60221 -19.92822 -19.49228 -18.17116 -17.73730 -16.94467 -16.73224 -16.19240 -16.07757 -15.99181 -15.47187 -15.23132 -14.62806 -14.46814 -14.24291 -13.89227 -13.86545 -13.17678 -13.08019 -12.98883 -12.66248 -12.53119 -12.37491 -12.26559 -11.94447 -11.74318 -11.45838 -11.43522 -11.10908 -10.97899 -10.86119 -10.53924 -10.37100 -10.27615 -9.98231 -9.58647 -9.57062 -9.50442 -8.67024 -8.04604 -7.57993 -6.28229 -4.35750 1.17132 2.04009 2.62569 2.99414 3.17245 3.19226 3.27360 3.33933 3.49214 3.64397 3.81765 3.94555 4.16487 4.27151 4.30181 4.36380 4.59073 5.00595 5.05913 5.11530 5.28375 5.31558 5.43289 5.49265 5.60305 5.62176 5.82922 5.99573 6.05309 6.08913 6.31514 6.36369 6.53751 6.85404 6.90643 7.01208 7.11344 7.27667 7.39239 7.63492 7.64503 7.85117 7.92821 7.97320 8.54584 8.71484 9.30798 10.79271 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002119 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.367041 B =13211.733518 C =13529.436353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.257 3.743 5 N -0.598 5.598 6 C 0.512 3.488 7 O -0.499 6.499 8 C 0.518 3.482 9 O -0.514 6.514 10 N -0.692 5.692 11 C 0.127 3.873 12 H 0.124 0.876 13 C -0.140 4.140 14 C 0.082 3.918 15 H 0.077 0.923 16 O -0.550 6.550 17 C -0.184 4.184 18 N -0.310 5.310 19 N -0.312 5.312 20 C 0.257 3.743 21 C -0.536 4.536 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.423 0.577 34 H 0.414 0.586 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.384 0.616 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 25.306 4.441 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.005 3.995 5 N -0.247 5.247 6 C 0.291 3.709 7 O -0.372 6.372 8 C 0.298 3.702 9 O -0.389 6.389 10 N -0.345 5.345 11 C 0.022 3.978 12 H 0.142 0.858 13 C -0.178 4.178 14 C 0.022 3.978 15 H 0.095 0.905 16 O -0.356 6.356 17 C -0.223 4.223 18 N -0.141 5.141 19 N -0.095 5.095 20 C 0.139 3.861 21 C -0.575 4.575 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.260 0.740 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.232 0.768 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.497 23.686 3.922 25.468 hybrid contribution -0.282 0.312 -0.377 0.564 sum 8.215 23.997 3.545 25.611 Atomic orbital electron populations 1.20347 0.87668 1.02937 1.03294 1.21082 0.95026 0.87058 1.00692 1.21229 0.89500 0.99889 1.21343 1.18892 0.86767 0.89695 1.04192 1.42008 1.08810 1.04374 1.69465 1.19936 0.89553 0.82604 0.78774 1.90708 1.25903 1.73913 1.46667 1.19954 0.89034 0.83653 0.77545 1.90792 1.26382 1.74293 1.47408 1.45730 1.10886 1.04930 1.72975 1.22660 0.89153 0.89040 0.96907 0.85811 1.23478 1.00091 0.94327 0.99893 1.22482 0.82498 0.96559 0.96269 0.90549 1.86480 1.16774 1.87948 1.44405 1.24191 1.03096 0.97428 0.97629 1.77337 0.99985 1.08255 1.28531 1.49081 1.00873 1.07963 1.51540 1.19753 0.96084 0.71136 0.99110 1.21343 1.46821 0.97995 0.91300 0.91654 1.24931 0.94637 0.96055 0.98176 1.69924 1.44887 1.07105 1.30982 0.86294 0.77865 0.78839 0.83651 1.19568 1.20623 1.20628 0.90295 0.90747 0.90733 0.82207 0.73990 0.74910 0.89430 0.87916 0.76838 0.88643 0.90073 0.92843 0.92610 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.11 36.01 0.36 -1.01 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.72 9.51 -39.82 -0.38 -6.10 16 4 C 0.26 5.22 8.10 -154.55 -1.25 3.97 16 5 N -0.60 -9.89 5.43 -11.58 -0.06 -9.96 16 6 C 0.51 7.53 7.85 -11.64 -0.09 7.43 16 7 O -0.50 -7.87 13.60 5.47 0.07 -7.79 16 8 C 0.52 6.49 7.89 -11.63 -0.09 6.40 16 9 O -0.51 -7.52 16.08 5.49 0.09 -7.44 16 10 N -0.69 -6.32 5.35 -53.48 -0.29 -6.61 16 11 C 0.13 1.01 4.17 -67.12 -0.28 0.73 16 12 H 0.12 1.24 7.47 -51.93 -0.39 0.85 16 13 C -0.14 -0.79 7.66 -25.91 -0.20 -0.99 16 14 C 0.08 0.42 5.28 -25.92 -0.14 0.28 16 15 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 16 O -0.55 -3.40 13.59 -35.23 -0.48 -3.88 16 17 C -0.18 -1.12 7.71 -25.92 -0.20 -1.32 16 18 N -0.31 -7.18 12.60 31.41 0.40 -6.79 16 19 N -0.31 -7.31 3.59 -58.33 -0.21 -7.52 16 20 C 0.26 6.51 5.99 -5.19 -0.03 6.48 16 21 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 22 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 25 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.23 7.07 -51.92 -0.37 0.86 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.16 2.97 5.91 -52.49 -0.31 2.66 16 33 H 0.42 6.38 8.29 -40.82 -0.34 6.04 16 34 H 0.41 3.13 8.20 -40.82 -0.33 2.79 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.38 0.74 9.12 45.56 0.42 1.15 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.06 1.39 7.04 -51.93 -0.37 1.02 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -33.43 364.75 -7.17 -40.60 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.61 Total: 8.12 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.29 Total: 3.88 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.57 Total: -55.02 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.32 Total: -19.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.43 -7.17 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328325581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.652 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds