Wall clock time and date at job start Fri Apr 10 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35209 * 126.06004 * 2 1 4 4 C 1.40461 * 107.87038 * 179.97438 * 3 2 1 5 5 N 1.39931 * 125.98180 * 179.97438 * 4 3 2 6 6 C 1.34769 * 119.99959 * 359.97438 * 5 4 3 7 7 O 1.21379 * 120.00381 * 0.02562 * 6 5 4 8 8 C 1.49351 * 119.99682 * 180.02562 * 6 5 4 9 9 O 1.21358 * 120.00081 * 359.97438 * 8 6 5 10 10 N 1.34772 * 119.99939 * 180.02562 * 8 6 5 11 11 C 1.46501 * 120.00042 * 179.97438 * 10 8 6 12 12 H 1.09000 * 112.90742 * 23.74973 * 11 10 8 13 13 C 1.53787 * 113.61128 * 154.99929 * 11 10 8 14 14 C 1.53784 * 87.07923 * 139.98386 * 13 11 10 15 15 H 1.09004 * 113.61162 * 220.01809 * 14 13 11 16 16 O 1.42900 * 113.61305 * 89.11533 * 14 13 11 17 17 C 1.53779 * 87.08045 * 334.56667 * 14 13 11 18 18 N 1.31276 * 108.03511 * 0.26502 * 4 3 2 19 19 N 1.34988 * 126.06382 * 179.97438 * 2 1 3 20 20 C 1.46503 * 125.97113 * 0.02562 * 19 2 1 21 21 C 1.50698 * 109.47098 * 89.99413 * 20 19 2 22 22 H 1.07993 * 120.00205 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99655 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00415 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47128 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46719 * 120.00225 * 25 23 21 28 28 H 1.48499 * 109.47238 * 240.00012 * 25 23 21 29 29 H 1.08996 * 109.47225 * 90.03048 * 1 2 3 30 30 H 1.09009 * 109.46804 * 210.02585 * 1 2 3 31 31 H 1.09000 * 109.47571 * 330.02045 * 1 2 3 32 32 H 1.08002 * 126.06843 * 359.96747 * 3 2 1 33 33 H 0.97001 * 119.99605 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99829 * 359.97438 * 10 8 6 35 35 H 1.09004 * 113.61202 * 254.53139 * 13 11 10 36 36 H 1.08994 * 113.61447 * 25.43570 * 13 11 10 37 37 H 0.96701 * 113.99636 * 180.02562 * 16 14 13 38 38 H 1.09006 * 113.61307 * 270.88660 * 17 14 13 39 39 H 1.08999 * 113.69146 * 139.99146 * 17 14 13 40 40 H 1.08992 * 109.46865 * 209.99617 * 20 19 2 41 41 H 1.09005 * 109.46638 * 329.99411 * 20 19 2 42 42 H 0.97001 * 120.00435 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0930 0.0000 4 6 3.6373 0.6546 0.0006 5 7 4.7718 1.4737 0.0003 6 6 4.6350 2.8144 -0.0012 7 8 3.5276 3.3115 -0.0018 8 6 5.8459 3.6886 -0.0021 9 8 6.9531 3.1916 -0.0010 10 7 5.7091 5.0293 -0.0031 11 6 6.8969 5.8869 -0.0034 12 1 7.7789 5.3898 -0.4072 13 6 6.6489 7.2824 -0.5999 14 6 7.5408 7.8352 0.5244 15 1 7.1768 8.7700 0.9507 16 8 8.9279 7.8818 0.1840 17 6 7.1480 6.5920 1.3399 18 7 3.6338 -0.6582 -0.0048 19 7 2.3017 -1.0912 0.0005 20 6 1.8498 -2.4848 0.0006 21 6 1.6952 -2.9628 -1.4202 22 1 1.9115 -2.2953 -2.2411 23 6 1.2777 -4.2525 -1.6720 24 7 1.0138 -5.0653 -0.6723 25 14 1.0854 -4.8449 -3.4331 26 1 1.4414 -3.7462 -4.3666 27 1 1.9849 -6.0033 -3.6667 28 1 -0.3223 -5.2564 -3.6661 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5135 32 1 1.9714 2.1209 -0.0005 33 1 5.6568 1.0764 0.0004 34 1 4.8241 5.4265 -0.0035 35 1 7.0713 7.4127 -1.5963 36 1 5.6107 7.6075 -0.5334 37 1 9.4939 8.2282 0.8874 38 1 6.2461 6.7284 1.9368 39 1 7.9724 6.1640 1.9103 40 1 2.5841 -3.1047 0.5147 41 1 0.8910 -2.5557 0.5142 42 1 0.7197 -5.9726 -0.8495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328325581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:26 Heat of formation + Delta-G solvation = -39.506610 kcal Electronic energy + Delta-G solvation = -26068.940767 eV Core-core repulsion = 22050.885606 eV Total energy + Delta-G solvation = -4018.055161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54014 -41.71497 -40.47165 -39.33066 -36.80309 -36.17719 -35.34738 -33.87703 -33.08969 -32.67723 -28.93092 -27.92767 -27.25416 -26.75172 -25.23528 -24.28430 -22.31993 -21.42335 -21.35175 -20.63229 -19.21822 -18.80079 -18.53395 -17.95725 -17.48718 -17.22738 -16.97087 -16.83010 -16.26101 -16.17377 -15.84856 -15.48735 -15.10482 -14.79255 -14.49957 -14.33016 -13.83926 -13.75097 -13.67168 -13.57807 -13.49512 -13.22367 -13.15435 -12.96480 -12.69429 -12.61847 -12.28683 -12.24675 -12.16829 -11.59080 -11.44207 -11.43730 -10.91417 -10.74755 -10.68295 -10.27156 -9.67582 -9.24814 -8.34484 -6.51425 0.01111 0.83275 1.06705 1.36340 1.38581 1.50690 1.68947 1.81156 2.21765 2.32940 2.56637 2.95980 3.14695 3.21316 3.45889 3.69258 3.79905 3.80966 4.10169 4.14493 4.39774 4.50515 4.64453 4.71629 4.72304 4.83765 4.85420 4.89659 4.91368 4.94317 5.01934 5.03110 5.06977 5.18873 5.34866 5.52664 5.77969 5.79488 5.82671 6.15820 6.21814 6.54812 6.60363 6.77479 6.91242 6.92861 7.19504 8.72159 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002119 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.367041 B =13211.733518 C =13529.436353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.090 3.910 3 C -0.292 4.292 4 C 0.265 3.735 5 N -0.601 5.601 6 C 0.517 3.483 7 O -0.505 6.505 8 C 0.524 3.476 9 O -0.539 6.539 10 N -0.670 5.670 11 C 0.111 3.889 12 H 0.099 0.901 13 C -0.133 4.133 14 C 0.088 3.912 15 H 0.105 0.895 16 O -0.574 6.574 17 C -0.178 4.178 18 N -0.354 5.354 19 N -0.338 5.338 20 C 0.273 3.727 21 C -0.552 4.552 22 H 0.050 0.950 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.274 1.274 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.428 0.572 34 H 0.424 0.576 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.400 0.600 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 27.779 4.075 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.040 4.040 3 C -0.323 4.323 4 C 0.012 3.988 5 N -0.250 5.250 6 C 0.298 3.702 7 O -0.378 6.378 8 C 0.304 3.696 9 O -0.416 6.416 10 N -0.323 5.323 11 C 0.007 3.993 12 H 0.117 0.883 13 C -0.171 4.171 14 C 0.028 3.972 15 H 0.123 0.877 16 O -0.382 6.382 17 C -0.217 4.217 18 N -0.185 5.185 19 N -0.120 5.120 20 C 0.154 3.846 21 C -0.591 4.591 22 H 0.068 0.932 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.201 1.201 28 H -0.191 1.191 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.194 0.806 33 H 0.266 0.734 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.251 0.749 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.759 26.229 3.576 27.586 hybrid contribution 0.011 -0.303 -0.221 0.375 sum 7.770 25.927 3.356 27.273 Atomic orbital electron populations 1.20504 0.84903 1.04479 1.04136 1.21826 0.96867 0.86234 0.99090 1.21469 0.89123 1.00370 1.21302 1.19200 0.88247 0.89306 1.02054 1.42135 1.08088 1.04807 1.70014 1.20376 0.90306 0.82016 0.77529 1.90682 1.26524 1.73918 1.46639 1.19541 0.87619 0.84434 0.78044 1.90794 1.26777 1.74826 1.49247 1.45734 1.12093 1.03618 1.70843 1.22878 0.87751 0.89558 0.99108 0.88309 1.23542 1.01697 0.92226 0.99665 1.22529 0.82068 0.97162 0.95408 0.87749 1.86441 1.17686 1.88267 1.45847 1.24193 1.03460 0.97451 0.96596 1.77250 1.00389 1.09927 1.30919 1.48864 1.01554 1.07784 1.53847 1.19310 0.95102 0.72273 0.97892 1.21451 1.47488 0.98383 0.91734 0.93218 1.25725 0.93979 0.95946 1.02191 1.70001 1.45078 1.07563 1.32895 0.85307 0.78496 0.78055 0.78598 1.19885 1.20135 1.19060 0.89641 0.91256 0.87103 0.80567 0.73399 0.73674 0.90236 0.85511 0.74885 0.87188 0.90942 0.95746 0.92532 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.58 10.11 71.24 0.72 -1.86 16 2 C 0.09 3.67 6.92 41.37 0.29 3.96 16 3 C -0.29 -11.35 9.51 22.11 0.21 -11.14 16 4 C 0.27 10.85 8.10 133.40 1.08 11.93 16 5 N -0.60 -19.88 5.43 -308.90 -1.68 -21.56 16 6 C 0.52 14.75 7.85 87.24 0.69 15.44 16 7 O -0.50 -15.06 13.60 -3.34 -0.05 -15.10 16 8 C 0.52 12.72 7.89 87.24 0.69 13.41 16 9 O -0.54 -15.79 16.08 -3.27 -0.05 -15.84 16 10 N -0.67 -11.15 5.35 -441.47 -2.36 -13.52 16 11 C 0.11 1.61 4.17 45.52 0.19 1.80 16 12 H 0.10 1.99 7.47 -2.39 -0.02 1.97 16 13 C -0.13 -1.20 7.66 31.12 0.24 -0.96 16 14 C 0.09 0.67 5.28 31.12 0.16 0.83 16 15 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 16 O -0.57 -6.13 13.59 -148.98 -2.02 -8.16 16 17 C -0.18 -1.79 7.71 31.12 0.24 -1.55 16 18 N -0.35 -16.88 12.60 -54.53 -0.69 -17.57 16 19 N -0.34 -16.23 3.59 -338.46 -1.22 -17.44 16 20 C 0.27 14.35 5.99 85.63 0.51 14.86 16 21 C -0.55 -30.89 9.39 25.60 0.24 -30.65 16 22 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 23 C 0.02 1.24 5.46 84.66 0.46 1.70 16 24 N -0.92 -51.63 13.29 21.45 0.28 -51.35 16 25 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 2.24 7.07 -2.38 -0.02 2.23 16 31 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.18 6.20 5.91 -2.91 -0.02 6.18 16 33 H 0.43 13.17 8.29 -92.71 -0.77 12.40 16 34 H 0.42 5.35 8.20 -92.70 -0.76 4.59 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.13 0.53 8.12 -2.39 -0.02 0.51 16 37 H 0.40 0.86 9.12 -74.06 -0.68 0.18 16 38 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 2.91 7.04 -2.38 -0.02 2.89 16 42 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -73.00 364.75 -1.14 -74.13 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -1.10 Total: 23.47 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.72 Total: 17.77 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -5.66 Total: -121.43 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -2.12 Total: -39.10 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.00 -1.14 -74.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328325581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.626 kcal (2) G-P(sol) polarization free energy of solvation -72.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds