Wall clock time and date at job start Fri Apr 10 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 110.88742 * 2 1 4 4 C 1.55160 * 111.03319 * 123.90804 * 2 1 3 5 5 C 1.54336 * 103.01821 * 153.39473 * 4 2 1 6 6 N 1.47017 * 107.26637 * 338.13493 * 5 4 2 7 7 C 1.34782 * 125.64901 * 178.84885 * 6 5 4 8 8 O 1.21360 * 119.99933 * 179.69275 * 7 6 5 9 9 C 1.49341 * 119.99863 * 359.69675 * 7 6 5 10 10 O 1.21393 * 119.99663 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00183 * 179.97438 * 9 7 6 12 12 C 1.39928 * 120.00009 * 180.02562 * 11 9 7 13 13 C 1.40461 * 125.98061 * 359.97067 * 12 11 9 14 14 C 1.35219 * 107.86542 * 179.74449 * 13 12 11 15 15 N 1.34990 * 107.87694 * 0.42042 * 14 13 12 16 16 C 1.46491 * 125.97355 * 179.83751 * 15 14 13 17 17 C 1.50702 * 109.46957 * 124.71877 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 N 1.31276 * 125.97776 * 179.97438 * 12 11 9 26 26 C 1.47422 * 108.70384 * 358.58831 * 6 5 4 27 27 H 1.08995 * 109.47821 * 182.42593 * 1 2 3 28 28 H 1.09000 * 109.47390 * 302.43098 * 1 2 3 29 29 H 1.09010 * 109.47343 * 62.42215 * 1 2 3 30 30 H 0.96694 * 114.00194 * 297.56579 * 3 2 1 31 31 H 1.09000 * 110.71806 * 271.95118 * 4 2 1 32 32 H 1.08997 * 110.72351 * 35.04309 * 4 2 1 33 33 H 1.08998 * 109.98757 * 218.66145 * 5 4 2 34 34 H 1.08994 * 109.78129 * 97.49687 * 5 4 2 35 35 H 0.96993 * 119.99421 * 359.97438 * 11 9 7 36 36 H 1.08000 * 126.06847 * 0.02562 * 13 12 11 37 37 H 1.08002 * 126.06369 * 180.26717 * 14 13 12 38 38 H 1.09004 * 109.47166 * 4.72143 * 16 15 14 39 39 H 1.08994 * 109.47507 * 244.71849 * 16 15 14 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.36599 * 143.19248 * 26 6 5 42 42 H 1.08992 * 110.37065 * 265.40533 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0394 1.3351 0.0000 4 6 2.0868 -0.8079 1.2019 5 6 3.4665 -1.2786 0.6951 6 7 3.4274 -1.2421 -0.7741 7 6 4.4478 -1.5601 -1.5952 8 8 4.3003 -1.4986 -2.7983 9 6 5.7599 -1.9879 -1.0246 10 8 5.9074 -2.0490 0.1788 11 7 6.7802 -2.3064 -1.8457 12 6 8.0094 -2.7078 -1.3110 13 6 8.3174 -2.8222 0.0546 14 6 9.5988 -3.2416 0.1571 15 7 10.0908 -3.3797 -1.0923 16 6 11.4466 -3.8118 -1.4403 17 6 11.3735 -5.0002 -2.3642 18 1 10.4131 -5.3939 -2.6626 19 6 12.5326 -5.5810 -2.8335 20 7 13.7021 -5.1012 -2.4704 21 14 12.4418 -7.0492 -3.9847 22 1 11.7076 -6.6669 -5.2176 23 1 13.8162 -7.4842 -4.3413 24 1 11.7296 -8.1641 -3.3100 25 7 9.0765 -3.0433 -1.9980 26 6 2.0852 -0.8063 -1.2006 27 1 -0.3634 -1.0266 0.0435 28 1 -0.3634 0.5511 0.8674 29 1 -0.3634 0.4758 -0.9110 30 1 1.7977 1.8483 -0.7831 31 1 2.1928 -0.1700 2.0794 32 1 1.4462 -1.6617 1.4228 33 1 3.6614 -2.2956 1.0356 34 1 4.2429 -0.6075 1.0621 35 1 6.6621 -2.2579 -2.8072 36 1 7.6480 -2.6165 0.8768 37 1 10.1345 -3.4301 1.0758 38 1 11.9836 -4.0893 -0.5332 39 1 11.9713 -2.9964 -1.9381 40 1 14.5176 -5.5101 -2.8003 41 1 2.1553 -0.1715 -2.0839 42 1 1.4527 -1.6702 -1.4045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338953778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:04 Heat of formation + Delta-G solvation = -21.171151 kcal Electronic energy + Delta-G solvation = -26556.158269 eV Core-core repulsion = 22538.898193 eV Total energy + Delta-G solvation = -4017.260076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21995 -40.46145 -39.31936 -38.15722 -35.98464 -34.81797 -33.36870 -32.23054 -31.03767 -30.08212 -29.41074 -27.92446 -26.79086 -24.92258 -23.41851 -22.57986 -21.18085 -20.98110 -20.07654 -19.44167 -17.96117 -17.37648 -16.85291 -16.61531 -16.54420 -16.49563 -15.41456 -15.36438 -14.96969 -14.77185 -14.49155 -14.28872 -14.08452 -13.70137 -13.54099 -13.22127 -12.97026 -12.86110 -12.54056 -12.41198 -12.28562 -12.13772 -11.86066 -11.79382 -11.53149 -11.08379 -11.05683 -10.85567 -10.64220 -10.54120 -10.26989 -10.02233 -9.56086 -9.50624 -9.06027 -8.64119 -8.22409 -7.57578 -6.25640 -4.30867 1.20660 1.94611 2.65925 3.01832 3.05511 3.25800 3.28985 3.33900 3.52787 3.66816 3.73646 3.92989 4.09020 4.29044 4.30940 4.37433 4.78433 4.83051 4.97986 5.09573 5.12247 5.18368 5.26010 5.42483 5.45144 5.53090 5.56347 5.69510 5.72583 5.81167 6.11074 6.33867 6.42119 6.79618 6.87769 7.01859 7.14672 7.23641 7.28703 7.57837 7.68820 7.85219 7.96493 7.98098 8.54426 8.77385 9.34869 10.83091 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.002255 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.114605 B =12413.328648 C =12857.571264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 O -0.546 6.546 4 C -0.122 4.122 5 C 0.108 3.892 6 N -0.587 5.587 7 C 0.530 3.470 8 O -0.519 6.519 9 C 0.515 3.485 10 O -0.494 6.494 11 N -0.599 5.599 12 C 0.251 3.749 13 C -0.285 4.285 14 C 0.053 3.947 15 N -0.315 5.315 16 C 0.257 3.743 17 C -0.531 4.531 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.909 3.091 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.295 5.295 26 C 0.081 3.919 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.380 0.620 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.423 0.577 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.650 10.115 7.652 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.071 3.929 3 O -0.352 6.352 4 C -0.160 4.160 5 C -0.014 4.014 6 N -0.321 5.321 7 C 0.313 3.687 8 O -0.395 6.395 9 C 0.295 3.705 10 O -0.367 6.367 11 N -0.247 5.247 12 C -0.001 4.001 13 C -0.316 4.316 14 C -0.097 4.097 15 N -0.097 5.097 16 C 0.140 3.860 17 C -0.569 4.569 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 N -0.126 5.126 26 C -0.042 4.042 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.228 0.772 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.260 0.740 36 H 0.178 0.822 37 H 0.188 0.812 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.469 9.681 7.172 27.275 hybrid contribution -0.464 -0.550 -0.908 1.158 sum -24.933 9.131 6.264 27.282 Atomic orbital electron populations 1.22276 0.93694 1.03436 1.03244 1.22317 0.92806 0.82996 0.94732 1.86574 1.78029 1.23435 1.47200 1.22808 0.95995 0.99421 0.97753 1.22238 0.97846 1.03153 0.78189 1.48039 1.11302 1.64662 1.08095 1.19586 0.84204 0.78935 0.85984 1.90790 1.82608 1.52176 1.13913 1.19749 0.84595 0.79445 0.86690 1.90696 1.81990 1.50003 1.14013 1.41971 1.08194 1.63322 1.11235 1.19004 0.86392 1.02507 0.92224 1.21509 0.97170 1.17559 0.95404 1.22582 0.95126 1.01418 0.90540 1.49170 1.11478 1.46857 1.02159 1.19790 0.71563 0.96353 0.98281 1.21213 0.93631 1.13123 1.28923 0.91320 1.24946 0.94883 0.97792 0.96428 1.69908 0.97510 1.41340 1.44528 0.86372 0.77126 0.81936 0.80986 1.19888 1.21031 1.20033 1.77414 0.95486 1.23702 1.16016 1.23090 0.83022 0.99602 0.98493 0.90913 0.90925 0.91761 0.77203 0.88654 0.88976 0.89863 0.89608 0.74007 0.82152 0.81238 0.92373 0.93549 0.92237 0.89564 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 9.01 37.16 0.33 -0.27 16 2 C 0.11 0.68 1.32 -88.47 -0.12 0.56 16 3 O -0.55 -3.94 13.18 -35.23 -0.46 -4.41 16 4 C -0.12 -0.75 6.16 -24.89 -0.15 -0.91 16 5 C 0.11 0.99 5.49 -3.06 -0.02 0.98 16 6 N -0.59 -6.29 3.33 -171.07 -0.57 -6.86 16 7 C 0.53 7.24 7.91 -11.63 -0.09 7.15 16 8 O -0.52 -7.99 16.73 5.49 0.09 -7.89 16 9 C 0.52 7.90 7.82 -11.64 -0.09 7.81 16 10 O -0.49 -7.87 11.24 5.46 0.06 -7.81 16 11 N -0.60 -10.12 5.43 -11.58 -0.06 -10.18 16 12 C 0.25 5.08 8.10 -154.55 -1.25 3.83 16 13 C -0.29 -5.46 9.60 -39.82 -0.38 -5.84 16 14 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 15 N -0.31 -7.24 3.67 -62.57 -0.23 -7.47 16 16 C 0.26 6.49 6.26 -5.20 -0.03 6.46 16 17 C -0.53 -14.73 9.24 -34.44 -0.32 -15.05 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 21 Si 0.91 21.43 29.54 -169.99 -5.02 16.40 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 N -0.29 -6.84 12.42 31.41 0.39 -6.45 16 26 C 0.08 0.62 6.10 -2.53 -0.02 0.60 16 27 H 0.07 0.21 8.11 -51.93 -0.42 -0.21 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.38 1.43 9.11 45.56 0.42 1.84 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.40 8.01 -51.93 -0.42 -0.02 16 33 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 34 H 0.09 0.91 7.56 -51.93 -0.39 0.52 16 35 H 0.42 6.60 8.29 -40.82 -0.34 6.26 16 36 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 37 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 38 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.09 0.67 8.04 -51.93 -0.42 0.26 16 42 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -33.48 359.65 -6.85 -40.33 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.78 Total: 5.65 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.43 Total: 7.77 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.27 Total: -55.47 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.31 Total: -20.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.48 -6.85 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338953778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.161 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds