Wall clock time and date at job start Fri Apr 10 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 110.88742 * 2 1 4 4 C 1.55160 * 111.03319 * 123.90804 * 2 1 3 5 5 C 1.54336 * 103.01821 * 153.39473 * 4 2 1 6 6 N 1.47017 * 107.26637 * 338.13493 * 5 4 2 7 7 C 1.34782 * 125.64901 * 178.84885 * 6 5 4 8 8 O 1.21360 * 119.99933 * 179.69275 * 7 6 5 9 9 C 1.49341 * 119.99863 * 359.69675 * 7 6 5 10 10 O 1.21393 * 119.99663 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00183 * 179.97438 * 9 7 6 12 12 C 1.39928 * 120.00009 * 180.02562 * 11 9 7 13 13 C 1.40461 * 125.98061 * 359.97067 * 12 11 9 14 14 C 1.35219 * 107.86542 * 179.74449 * 13 12 11 15 15 N 1.34990 * 107.87694 * 0.42042 * 14 13 12 16 16 C 1.46491 * 125.97355 * 179.83751 * 15 14 13 17 17 C 1.50702 * 109.46957 * 124.71877 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 N 1.31276 * 125.97776 * 179.97438 * 12 11 9 26 26 C 1.47422 * 108.70384 * 358.58831 * 6 5 4 27 27 H 1.08995 * 109.47821 * 182.42593 * 1 2 3 28 28 H 1.09000 * 109.47390 * 302.43098 * 1 2 3 29 29 H 1.09010 * 109.47343 * 62.42215 * 1 2 3 30 30 H 0.96694 * 114.00194 * 297.56579 * 3 2 1 31 31 H 1.09000 * 110.71806 * 271.95118 * 4 2 1 32 32 H 1.08997 * 110.72351 * 35.04309 * 4 2 1 33 33 H 1.08998 * 109.98757 * 218.66145 * 5 4 2 34 34 H 1.08994 * 109.78129 * 97.49687 * 5 4 2 35 35 H 0.96993 * 119.99421 * 359.97438 * 11 9 7 36 36 H 1.08000 * 126.06847 * 0.02562 * 13 12 11 37 37 H 1.08002 * 126.06369 * 180.26717 * 14 13 12 38 38 H 1.09004 * 109.47166 * 4.72143 * 16 15 14 39 39 H 1.08994 * 109.47507 * 244.71849 * 16 15 14 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.36599 * 143.19248 * 26 6 5 42 42 H 1.08992 * 110.37065 * 265.40533 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0394 1.3351 0.0000 4 6 2.0868 -0.8079 1.2019 5 6 3.4665 -1.2786 0.6951 6 7 3.4274 -1.2421 -0.7741 7 6 4.4478 -1.5601 -1.5952 8 8 4.3003 -1.4986 -2.7983 9 6 5.7599 -1.9879 -1.0246 10 8 5.9074 -2.0490 0.1788 11 7 6.7802 -2.3064 -1.8457 12 6 8.0094 -2.7078 -1.3110 13 6 8.3174 -2.8222 0.0546 14 6 9.5988 -3.2416 0.1571 15 7 10.0908 -3.3797 -1.0923 16 6 11.4466 -3.8118 -1.4403 17 6 11.3735 -5.0002 -2.3642 18 1 10.4131 -5.3939 -2.6626 19 6 12.5326 -5.5810 -2.8335 20 7 13.7021 -5.1012 -2.4704 21 14 12.4418 -7.0492 -3.9847 22 1 11.7076 -6.6669 -5.2176 23 1 13.8162 -7.4842 -4.3413 24 1 11.7296 -8.1641 -3.3100 25 7 9.0765 -3.0433 -1.9980 26 6 2.0852 -0.8063 -1.2006 27 1 -0.3634 -1.0266 0.0435 28 1 -0.3634 0.5511 0.8674 29 1 -0.3634 0.4758 -0.9110 30 1 1.7977 1.8483 -0.7831 31 1 2.1928 -0.1700 2.0794 32 1 1.4462 -1.6617 1.4228 33 1 3.6614 -2.2956 1.0356 34 1 4.2429 -0.6075 1.0621 35 1 6.6621 -2.2579 -2.8072 36 1 7.6480 -2.6165 0.8768 37 1 10.1345 -3.4301 1.0758 38 1 11.9836 -4.0893 -0.5332 39 1 11.9713 -2.9964 -1.9381 40 1 14.5176 -5.5101 -2.8003 41 1 2.1553 -0.1715 -2.0839 42 1 1.4527 -1.6702 -1.4045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338953778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:03 Heat of formation + Delta-G solvation = -46.633235 kcal Electronic energy + Delta-G solvation = -26557.262388 eV Core-core repulsion = 22538.898193 eV Total energy + Delta-G solvation = -4018.364195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50638 -41.72845 -40.29917 -39.21439 -36.86796 -36.12751 -35.29151 -32.86047 -32.83622 -31.03393 -30.67017 -29.04487 -28.24734 -26.08334 -24.77627 -23.84540 -22.55071 -21.60258 -21.50995 -20.71004 -18.98180 -18.71212 -18.35005 -17.93692 -17.73905 -17.50599 -16.96692 -16.41831 -16.31524 -15.84063 -15.74401 -15.44157 -14.99798 -14.81210 -14.66346 -14.25865 -14.23894 -13.89282 -13.81263 -13.67864 -13.36674 -13.05608 -13.01588 -12.79998 -12.64406 -12.54589 -12.35830 -12.29881 -12.14716 -11.66590 -11.56322 -11.45170 -11.14048 -10.74959 -10.71993 -9.93838 -9.83015 -9.22770 -8.34411 -6.47992 0.00431 0.77690 1.11711 1.37669 1.39741 1.48274 1.69968 1.75320 2.22203 2.31743 2.43631 2.97787 3.01094 3.19218 3.38909 3.56564 3.85259 3.89920 4.20514 4.23290 4.36257 4.47186 4.60170 4.63082 4.71650 4.80554 4.84132 4.87361 4.88538 4.95521 5.00997 5.05162 5.10811 5.16783 5.32604 5.54964 5.74463 5.76380 5.86119 6.01630 6.23863 6.41019 6.62694 6.70471 6.81066 6.94821 7.21723 8.73221 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.002255 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.114605 B =12413.328648 C =12857.571264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.119 3.881 3 O -0.567 6.567 4 C -0.116 4.116 5 C 0.102 3.898 6 N -0.579 5.579 7 C 0.531 3.469 8 O -0.542 6.542 9 C 0.517 3.483 10 O -0.499 6.499 11 N -0.602 5.602 12 C 0.259 3.741 13 C -0.287 4.287 14 C 0.061 3.939 15 N -0.339 5.339 16 C 0.271 3.729 17 C -0.550 4.550 18 H 0.051 0.949 19 C 0.019 3.981 20 N -0.919 5.919 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.269 1.269 25 N -0.342 5.342 26 C 0.073 3.927 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.427 0.573 36 H 0.177 0.823 37 H 0.208 0.792 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.273 0.727 41 H 0.084 0.916 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.938 9.853 8.566 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.077 3.923 3 O -0.376 6.376 4 C -0.154 4.154 5 C -0.020 4.020 6 N -0.312 5.312 7 C 0.313 3.687 8 O -0.420 6.420 9 C 0.298 3.702 10 O -0.371 6.371 11 N -0.251 5.251 12 C 0.005 3.995 13 C -0.317 4.317 14 C -0.087 4.087 15 N -0.122 5.122 16 C 0.153 3.847 17 C -0.588 4.588 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.194 1.194 25 N -0.173 5.173 26 C -0.049 4.049 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.243 0.757 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.265 0.735 36 H 0.194 0.806 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.811 9.447 8.122 29.565 hybrid contribution 0.122 -0.370 -1.096 1.163 sum -26.690 9.077 7.025 29.053 Atomic orbital electron populations 1.22232 0.91354 1.04460 1.03905 1.22383 0.94267 0.82201 0.93436 1.86541 1.78626 1.24125 1.48295 1.22866 0.94326 1.00417 0.97784 1.22361 0.99580 1.02826 0.77225 1.48202 1.11640 1.62655 1.08681 1.19186 0.84056 0.79589 0.85897 1.90782 1.82829 1.53794 1.14635 1.20181 0.84914 0.78571 0.86514 1.90673 1.82252 1.49915 1.14284 1.42089 1.07556 1.63711 1.11756 1.19317 0.86709 1.00758 0.92749 1.21743 0.97329 1.17381 0.95273 1.23256 0.95326 0.99600 0.90549 1.48920 1.11020 1.48855 1.03356 1.19389 0.72911 0.94672 0.97753 1.21368 0.93128 1.14267 1.30002 0.93034 1.25724 0.94466 1.00292 0.97675 1.69982 0.98031 1.42424 1.45284 0.85423 0.77614 0.78761 0.78771 1.20092 1.19710 1.19385 1.77327 0.96585 1.26035 1.17384 1.23436 0.81449 1.00610 0.99370 0.89660 0.90655 0.90801 0.75673 0.88280 0.86482 0.89950 0.91340 0.73540 0.80636 0.77540 0.91846 0.95962 0.91800 0.89774 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.01 71.98 0.65 0.01 16 2 C 0.12 1.12 1.32 -9.40 -0.01 1.11 16 3 O -0.57 -7.17 13.18 -148.98 -1.96 -9.13 16 4 C -0.12 -1.14 6.16 31.79 0.20 -0.94 16 5 C 0.10 1.73 5.49 86.73 0.48 2.21 16 6 N -0.58 -11.71 3.33 -813.49 -2.71 -14.42 16 7 C 0.53 14.25 7.91 87.23 0.69 14.94 16 8 O -0.54 -16.58 16.73 -3.28 -0.05 -16.63 16 9 C 0.52 15.73 7.82 87.23 0.68 16.42 16 10 O -0.50 -15.53 11.24 -3.38 -0.04 -15.57 16 11 N -0.60 -20.52 5.43 -308.89 -1.68 -22.20 16 12 C 0.26 10.53 8.10 133.40 1.08 11.61 16 13 C -0.29 -10.76 9.60 22.12 0.21 -10.54 16 14 C 0.06 2.33 11.43 83.51 0.95 3.29 16 15 N -0.34 -15.87 3.67 -351.86 -1.29 -17.16 16 16 C 0.27 14.02 6.26 85.64 0.54 14.56 16 17 C -0.55 -31.12 9.24 25.60 0.24 -30.88 16 18 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 19 C 0.02 1.06 5.46 84.66 0.46 1.52 16 20 N -0.92 -52.08 13.29 21.45 0.28 -51.79 16 21 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 N -0.34 -16.27 12.42 -54.54 -0.68 -16.95 16 26 C 0.07 0.96 6.10 86.86 0.53 1.49 16 27 H 0.08 0.16 8.11 -2.39 -0.02 0.14 16 28 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.39 2.31 9.11 -74.06 -0.67 1.64 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 0.59 8.01 -2.39 -0.02 0.57 16 33 H 0.08 1.43 7.71 -2.39 -0.02 1.41 16 34 H 0.07 1.42 7.56 -2.39 -0.02 1.40 16 35 H 0.43 13.68 8.29 -92.71 -0.77 12.91 16 36 H 0.18 6.01 5.91 -2.91 -0.02 6.00 16 37 H 0.21 6.00 8.06 -2.91 -0.02 5.97 16 38 H 0.06 3.16 8.07 -2.38 -0.02 3.14 16 39 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 41 H 0.08 1.18 8.04 -2.38 -0.02 1.16 16 42 H 0.10 1.03 8.04 -2.39 -0.02 1.01 16 Total: -1.00 -72.53 359.65 0.23 -72.31 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.37 Total: 20.78 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 6.69 Total: 24.78 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.07 Total: -122.52 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.06 Total: -41.33 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.53 0.23 -72.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338953778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.673 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds