Wall clock time and date at job start Fri Apr 10 2020 18:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39702 * 125.76996 * 2 1 4 4 C 1.36215 * 107.85774 * 180.14602 * 3 2 1 5 5 N 1.39190 * 126.27380 * 179.84520 * 4 3 2 6 6 C 1.34776 * 120.00292 * 359.69176 * 5 4 3 7 7 O 1.21395 * 119.99492 * 359.97438 * 6 5 4 8 8 C 1.49300 * 120.00459 * 179.97438 * 6 5 4 9 9 O 1.21366 * 119.99896 * 353.54562 * 8 6 5 10 10 N 1.34783 * 119.99886 * 173.81738 * 8 6 5 11 11 C 1.47151 * 120.97786 * 180.89200 * 10 8 6 12 12 C 1.53724 * 108.16057 * 129.43627 * 11 10 8 13 13 O 1.42963 * 109.14262 * 52.53517 * 12 11 10 14 14 C 1.42964 * 114.16949 * 297.28580 * 13 12 11 15 15 C 1.47150 * 120.98353 * 1.18085 * 10 8 6 16 16 N 1.35862 * 107.45682 * 359.58642 * 4 3 2 17 17 C 1.46498 * 126.09909 * 180.22808 * 16 4 3 18 18 C 1.50693 * 109.47083 * 89.99979 * 17 16 4 19 19 H 1.07995 * 120.00714 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99503 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00611 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47043 * 59.99470 * 22 20 18 24 24 H 1.48494 * 109.47371 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47107 * 299.99909 * 22 20 18 26 26 N 1.30844 * 125.77225 * 179.67776 * 2 1 3 27 27 H 1.09007 * 109.46519 * 270.30065 * 1 2 3 28 28 H 1.08999 * 109.46797 * 30.29484 * 1 2 3 29 29 H 1.08992 * 109.47386 * 150.29710 * 1 2 3 30 30 H 1.07996 * 126.07246 * 359.97438 * 3 2 1 31 31 H 0.97006 * 120.00068 * 179.69195 * 5 4 3 32 32 H 1.08999 * 109.68568 * 249.20838 * 11 10 8 33 33 H 1.09003 * 109.68561 * 9.77257 * 11 10 8 34 34 H 1.09003 * 109.65456 * 292.57477 * 12 11 10 35 35 H 1.08997 * 109.48754 * 172.39696 * 12 11 10 36 36 H 1.09002 * 109.51200 * 302.66650 * 14 13 12 37 37 H 1.08996 * 109.55406 * 182.53007 * 14 13 12 38 38 H 1.09002 * 109.68079 * 350.22792 * 15 10 8 39 39 H 1.08994 * 109.68199 * 110.78643 * 15 10 8 40 40 H 1.08999 * 109.46531 * 209.99880 * 17 16 4 41 41 H 1.09001 * 109.46970 * 329.99173 * 17 16 4 42 42 H 0.96997 * 120.00347 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7146 -0.0033 5 7 4.7484 1.5290 -0.0075 6 6 4.6119 2.8699 -0.0148 7 8 3.5045 3.3671 -0.0182 8 6 5.8226 3.7435 -0.0187 9 8 6.9258 3.2524 0.1029 10 7 5.6901 5.0782 -0.1517 11 6 6.8696 5.9576 -0.1778 12 6 6.7552 6.8763 -1.4050 13 8 5.4809 7.5243 -1.3884 14 6 4.3688 6.6312 -1.4861 15 6 4.3613 5.6996 -0.2687 16 7 3.6089 -0.6440 0.0040 17 6 4.7858 -1.5165 0.0084 18 6 5.1897 -1.8079 1.4306 19 1 4.6265 -1.3853 2.2495 20 6 6.2791 -2.6135 1.6865 21 7 6.9653 -3.1279 0.6895 22 14 6.7803 -2.9743 3.4495 23 1 5.6611 -3.6498 4.1540 24 1 7.9739 -3.8578 3.4539 25 1 7.1048 -1.7014 4.1422 26 7 2.2719 -1.0616 0.0060 27 1 -0.3633 0.0054 1.0278 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5092 30 1 1.9870 2.1597 -0.0004 31 1 5.6333 1.1316 -0.0051 32 1 6.9005 6.5576 0.7316 33 1 7.7751 5.3553 -0.2520 34 1 6.8511 6.2852 -2.3158 35 1 7.5454 7.6263 -1.3728 36 1 4.4562 6.0392 -2.3971 37 1 3.4420 7.2042 -1.5116 38 1 3.6050 4.9262 -0.4030 39 1 4.1441 6.2739 0.6318 40 1 4.5473 -2.4505 -0.5003 41 1 5.6075 -1.0208 -0.5085 42 1 7.7314 -3.6949 0.8695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340836622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:13 Heat of formation + Delta-G solvation = -28.625756 kcal Electronic energy + Delta-G solvation = -27506.177758 eV Core-core repulsion = 23488.594426 eV Total energy + Delta-G solvation = -4017.583332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78483 -41.82311 -40.19927 -39.34878 -36.84344 -35.94384 -35.45485 -33.87157 -32.45625 -30.91304 -30.20809 -29.27129 -27.83681 -26.34501 -25.17285 -24.70192 -23.21375 -21.90535 -21.37318 -20.52919 -19.01002 -18.81724 -18.40182 -18.03180 -17.52272 -17.26611 -16.94319 -16.54545 -16.32734 -16.26312 -15.98731 -15.83993 -15.48701 -15.23497 -14.64763 -14.46628 -14.37941 -14.10597 -13.64449 -13.61226 -13.40893 -13.18948 -13.13706 -12.91609 -12.72214 -12.42481 -12.38764 -12.30924 -12.11315 -11.86915 -11.76205 -11.40865 -11.32562 -10.79045 -10.34694 -9.85226 -9.70116 -9.20288 -8.39530 -6.57297 -0.15704 0.69985 1.05653 1.34886 1.35976 1.44714 1.68667 1.77311 2.04265 2.17785 2.31832 2.86086 2.87250 2.91295 3.69244 3.78622 3.90529 4.07671 4.08373 4.18311 4.22709 4.35391 4.51931 4.59328 4.65541 4.70787 4.79918 4.80953 4.85297 4.89549 4.93723 5.00452 5.12704 5.17244 5.23498 5.47006 5.71028 5.72635 5.90098 5.93461 6.03149 6.09085 6.37659 6.52546 6.61195 6.94595 7.14691 8.67060 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.003866 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.880347 B = 7240.522095 C = 9075.339481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.285 4.285 4 C 0.285 3.715 5 N -0.611 5.611 6 C 0.521 3.479 7 O -0.483 6.483 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.576 5.576 11 C 0.068 3.932 12 C 0.052 3.948 13 O -0.393 6.393 14 C 0.050 3.950 15 C 0.018 3.982 16 N -0.367 5.367 17 C 0.272 3.728 18 C -0.559 4.559 19 H 0.050 0.950 20 C 0.026 3.974 21 N -0.914 5.914 22 Si 0.969 3.031 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.269 1.269 26 N -0.323 5.323 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.183 0.817 31 H 0.425 0.575 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.055 0.945 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 21.214 -4.061 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.317 4.317 4 C 0.063 3.937 5 N -0.258 5.258 6 C 0.304 3.696 7 O -0.358 6.358 8 C 0.299 3.701 9 O -0.415 6.415 10 N -0.310 5.310 11 C -0.053 4.053 12 C -0.025 4.025 13 O -0.311 6.311 14 C -0.027 4.027 15 C -0.102 4.102 16 N -0.152 5.152 17 C 0.153 3.847 18 C -0.598 4.598 19 H 0.068 0.932 20 C -0.176 4.176 21 N -0.552 5.552 22 Si 0.793 3.207 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.194 1.194 26 N -0.148 5.148 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.200 0.800 31 H 0.263 0.737 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.690 20.081 -4.049 21.016 hybrid contribution 1.312 -0.465 0.823 1.617 sum -3.378 19.617 -3.226 20.165 Atomic orbital electron populations 1.20264 0.83484 1.04333 1.03879 1.22939 0.98887 0.89835 0.98855 1.21587 0.88076 1.01405 1.20609 1.18387 0.88835 0.82907 1.03534 1.42468 1.08893 1.05390 1.69047 1.20214 0.90289 0.81697 0.77393 1.90291 1.26762 1.71273 1.47457 1.19477 0.87860 0.83765 0.78961 1.90823 1.27049 1.74225 1.49439 1.48077 1.10547 1.03879 1.68482 1.22795 0.88303 0.92790 1.01397 1.23169 0.86832 0.96854 0.95641 1.87952 1.14599 1.34099 1.94461 1.23134 0.91039 0.92472 0.96029 1.23980 0.84609 1.00810 1.00810 1.49360 1.06405 1.02638 1.56838 1.19207 0.78596 0.89051 0.97810 1.21396 1.13960 1.32732 0.91672 0.93212 1.25714 0.95314 0.94322 1.02214 1.69978 1.19460 1.32602 1.33121 0.85442 0.77976 0.78557 0.78765 1.19749 1.19561 1.19433 1.77339 0.86137 1.23870 1.27410 0.89573 0.87969 0.90785 0.79988 0.73709 0.88493 0.88241 0.92562 0.84739 0.92709 0.85055 0.83040 0.89248 0.95056 0.94035 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.51 10.44 71.24 0.74 -0.77 16 2 C 0.06 2.23 7.20 43.06 0.31 2.54 16 3 C -0.29 -10.54 9.58 22.15 0.21 -10.33 16 4 C 0.28 11.84 7.68 131.25 1.01 12.85 16 5 N -0.61 -22.54 5.40 -309.59 -1.67 -24.21 16 6 C 0.52 16.21 7.77 87.22 0.68 16.88 16 7 O -0.48 -14.07 10.16 -3.39 -0.03 -14.11 16 8 C 0.52 14.84 7.77 87.22 0.68 15.52 16 9 O -0.54 -18.32 15.96 -3.30 -0.05 -18.37 16 10 N -0.58 -12.60 3.01 -818.26 -2.47 -15.06 16 11 C 0.07 1.17 6.66 86.50 0.58 1.74 16 12 C 0.05 0.71 7.00 72.23 0.51 1.21 16 13 O -0.39 -6.46 10.74 -148.98 -1.60 -8.06 16 14 C 0.05 0.72 6.99 72.08 0.50 1.23 16 15 C 0.02 0.33 6.38 86.36 0.55 0.88 16 16 N -0.37 -17.52 3.62 -348.40 -1.26 -18.78 16 17 C 0.27 14.37 6.02 85.63 0.52 14.88 16 18 C -0.56 -31.44 9.39 25.60 0.24 -31.20 16 19 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 20 C 0.03 1.44 5.46 84.66 0.46 1.90 16 21 N -0.91 -51.75 13.29 21.45 0.28 -51.46 16 22 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 N -0.32 -14.80 12.56 -47.49 -0.60 -15.40 16 27 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.18 5.90 5.83 -2.91 -0.02 5.89 16 31 H 0.42 16.36 7.48 -92.70 -0.69 15.67 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.86 7.09 -2.39 -0.02 1.84 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.15 3.08 3.97 -72.59 -0.29 2.79 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 2.18 7.52 -2.39 -0.02 2.16 16 42 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.67 353.36 1.71 -66.96 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.10 Total: 25.65 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 6.98 Total: 27.33 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.71 Total: -124.91 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.69 Total: -40.54 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.67 1.71 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340836622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.335 kcal (2) G-P(sol) polarization free energy of solvation -68.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds