Wall clock time and date at job start Fri Apr 10 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00158 * 2 1 4 4 H 1.48498 * 109.47149 * 270.00056 * 3 2 1 5 5 H 1.48505 * 109.47026 * 29.99867 * 3 2 1 6 6 H 1.48499 * 109.47156 * 149.99618 * 3 2 1 7 7 C 1.38954 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99462 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00039 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99661 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00207 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99926 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.46869 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99456 * 180.02562 * 13 12 10 15 15 O 1.21493 * 120.00605 * 0.02562 * 14 13 12 16 16 C 1.48334 * 119.99782 * 180.02562 * 14 13 12 17 17 C 1.42273 * 126.94020 * 180.02562 * 16 14 13 18 18 C 1.35315 * 103.92101 * 179.97438 * 17 16 14 19 19 C 1.50701 * 126.66059 * 179.97438 * 18 17 16 20 20 N 1.46902 * 109.47222 * 90.00421 * 19 18 17 21 21 C 1.48529 * 110.99645 * 52.59903 * 20 19 18 22 22 C 1.54941 * 103.22612 * 159.71944 * 21 20 19 23 23 C 1.54598 * 102.92059 * 322.58903 * 22 21 20 24 24 C 1.47895 * 110.99817 * 169.99456 * 20 19 18 25 25 O 1.34018 * 106.67104 * 0.02562 * 18 17 16 26 26 N 1.20904 * 111.84252 * 359.97438 * 25 18 17 27 27 H 0.97005 * 119.99939 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00164 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47055 * 60.00303 * 12 10 9 30 30 H 1.08997 * 109.47389 * 299.99659 * 12 10 9 31 31 H 0.96995 * 120.00509 * 0.02562 * 13 12 10 32 32 H 1.07999 * 128.03464 * 0.26327 * 17 16 14 33 33 H 1.09005 * 109.46984 * 210.00082 * 19 18 17 34 34 H 1.08998 * 109.47396 * 330.00345 * 19 18 17 35 35 H 1.08998 * 110.67542 * 278.15597 * 21 20 19 36 36 H 1.09007 * 110.67117 * 41.28868 * 21 20 19 37 37 H 1.08994 * 110.72781 * 204.22492 * 22 21 20 38 38 H 1.09002 * 110.72019 * 80.94295 * 22 21 20 39 39 H 1.08998 * 110.30526 * 263.03785 * 23 22 21 40 40 H 1.09000 * 110.30715 * 140.86973 * 23 22 21 41 41 H 1.08995 * 109.92266 * 333.50878 * 24 20 19 42 42 H 1.09003 * 109.91891 * 94.60858 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3742 -3.9980 0.0023 15 8 8.1637 -3.0746 0.0028 16 6 7.8686 -5.3965 0.0024 17 6 9.2257 -5.8236 0.0035 18 6 9.1420 -7.1741 0.0036 19 6 10.2929 -8.1470 0.0041 20 7 10.6664 -8.4631 1.3893 21 6 9.4840 -8.9062 2.1714 22 6 10.1133 -9.6713 3.3626 23 6 11.3180 -10.3908 2.7137 24 6 11.6254 -9.5879 1.4361 25 8 7.8368 -7.4784 0.0021 26 7 7.1439 -6.4876 0.0015 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9241 -1.8567 0.8911 30 1 5.9241 -1.8567 -0.8889 31 1 5.4188 -4.4890 0.0016 32 1 10.1158 -5.2119 0.0084 33 1 9.9960 -9.0613 -0.5098 34 1 11.1451 -7.7020 -0.5094 35 1 8.9123 -8.0479 2.5243 36 1 8.8559 -9.5697 1.5767 37 1 9.4079 -10.3937 3.7731 38 1 10.4482 -8.9769 4.1332 39 1 11.0539 -11.4176 2.4608 40 1 12.1756 -10.3745 3.3863 41 1 11.4970 -10.2222 0.5591 42 1 12.6454 -9.2050 1.4711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343743517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:18 Heat of formation + Delta-G solvation = 4.447749 kcal Electronic energy + Delta-G solvation = -25957.542383 eV Core-core repulsion = 21941.393226 eV Total energy + Delta-G solvation = -4016.149157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.29985 -39.70236 -39.37450 -38.31973 -34.68887 -34.44021 -33.99730 -33.66337 -31.82701 -31.09648 -29.30920 -28.29851 -26.42548 -25.10444 -23.73691 -22.87873 -21.56935 -21.32214 -20.08772 -19.64254 -18.72639 -18.07827 -17.84741 -17.02960 -16.39138 -16.17877 -15.87822 -15.44531 -15.38591 -14.98128 -14.90969 -14.47011 -14.02815 -14.00682 -13.81861 -13.50060 -13.14960 -13.09993 -12.54228 -12.41990 -12.22222 -12.20583 -12.11153 -11.83835 -11.59076 -11.56388 -11.25632 -11.02040 -10.65987 -10.61317 -10.34635 -10.07530 -9.85132 -9.72161 -9.06153 -8.97345 -8.81287 -8.32713 -6.42290 -3.95086 0.93737 1.44576 2.60242 2.92446 2.98104 3.02910 3.11453 3.12681 3.52640 3.53214 3.83062 4.01905 4.08423 4.16984 4.36705 4.48275 4.49712 4.62595 4.79927 4.81332 4.95934 5.06384 5.11824 5.14869 5.18568 5.22973 5.34233 5.39980 5.53230 5.59489 5.63619 5.66460 5.70846 5.71996 5.72430 6.29226 6.36023 6.37334 7.39870 7.48725 7.85001 7.97064 8.11979 8.42809 8.79752 9.27384 9.60410 10.69736 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032027 B = 0.002020 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.057342 B =13860.868247 C =14181.897218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.576 6.576 12 C 0.105 3.895 13 N -0.690 5.690 14 C 0.597 3.403 15 O -0.530 6.530 16 C -0.023 4.023 17 C -0.154 4.154 18 C -0.043 4.043 19 C 0.131 3.869 20 N -0.514 5.514 21 C 0.029 3.971 22 C -0.124 4.124 23 C -0.131 4.131 24 C 0.035 3.965 25 O 0.124 5.876 26 N -0.321 5.321 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.419 0.581 32 H 0.183 0.817 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.305 -17.666 2.242 30.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.212 5.212 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.022 4.022 13 N -0.344 5.344 14 C 0.380 3.620 15 O -0.406 6.406 16 C -0.182 4.182 17 C -0.177 4.177 18 C -0.107 4.107 19 C 0.002 3.998 20 N -0.239 5.239 21 C -0.098 4.098 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.092 4.092 25 O 0.047 5.953 26 N -0.020 5.020 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.258 0.742 32 H 0.200 0.800 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.077 -17.233 2.442 29.709 hybrid contribution 0.549 0.780 -0.392 1.032 sum 24.626 -16.452 2.050 29.687 Atomic orbital electron populations 1.69619 1.05713 1.27846 1.47987 1.25073 0.95547 0.98187 0.97095 0.86665 0.79912 0.83729 0.79149 1.19363 1.19936 1.19220 1.19449 0.78888 0.96853 1.48717 0.86040 1.42099 1.07725 1.06041 1.65334 1.19562 0.87875 0.85002 0.85369 1.90567 1.69047 1.30852 1.55519 1.21082 0.94240 0.83095 1.03798 1.45568 1.06422 1.10024 1.72429 1.16795 0.82542 0.85244 0.77428 1.90788 1.55606 1.43574 1.50605 1.23487 0.92212 0.94582 1.07966 1.22400 0.97497 0.93309 1.04537 1.24148 0.85801 0.95557 1.05146 1.20740 0.91876 0.95817 0.91365 1.64984 1.11513 1.37520 1.09918 1.23325 0.92499 0.99187 0.94788 1.22476 0.96995 0.99117 0.97588 1.22405 0.98996 0.98916 0.96621 1.22907 0.97470 0.91075 0.97762 1.84807 1.15199 1.29403 1.65916 1.74271 1.18689 0.93866 1.15150 0.91347 0.79210 0.89181 0.89172 0.74186 0.80005 0.91791 0.86866 0.89963 0.92882 0.90745 0.90546 0.91298 0.90765 0.93241 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.96 55.50 0.77 -24.23 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.02 27.74 -169.99 -4.71 14.30 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.57 -13.46 5.09 -10.96 -0.06 -13.52 16 10 C 0.44 9.79 7.85 -10.99 -0.09 9.71 16 11 O -0.58 -15.02 15.24 5.54 0.08 -14.94 16 12 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16 13 N -0.69 -12.04 5.53 -62.27 -0.34 -12.39 16 14 C 0.60 9.91 7.85 -12.10 -0.09 9.82 16 15 O -0.53 -9.65 16.95 5.37 0.09 -9.56 16 16 C -0.02 -0.33 7.19 -82.52 -0.59 -0.93 16 17 C -0.15 -1.72 10.92 -39.07 -0.43 -2.15 16 18 C -0.04 -0.41 5.75 -35.35 -0.20 -0.61 16 19 C 0.13 0.81 5.59 -4.97 -0.03 0.78 16 20 N -0.51 -3.57 5.39 -231.89 -1.25 -4.82 16 21 C 0.03 0.22 5.43 -1.90 -0.01 0.21 16 22 C -0.12 -0.73 7.06 -24.87 -0.18 -0.90 16 23 C -0.13 -0.61 6.93 -25.37 -0.18 -0.79 16 24 C 0.04 0.18 6.69 -2.76 -0.02 0.16 16 25 O 0.12 1.44 10.98 17.24 0.19 1.63 16 26 N -0.32 -4.54 11.84 33.30 0.39 -4.15 16 27 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.42 7.66 7.20 -40.82 -0.29 7.37 16 32 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.06 0.32 7.81 -51.93 -0.41 -0.09 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 36 H 0.05 0.38 8.02 -51.93 -0.42 -0.04 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.05 0.20 7.57 -51.93 -0.39 -0.19 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -33.12 359.67 -7.02 -40.13 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.51 Total: 12.65 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -2.09 Total: 9.47 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.48 Total: -59.11 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.36 Total: -22.87 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.12 -7.02 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343743517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.583 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds