Wall clock time and date at job start Fri Apr 10 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00158 * 2 1 4 4 H 1.48498 * 109.47149 * 270.00056 * 3 2 1 5 5 H 1.48505 * 109.47026 * 29.99867 * 3 2 1 6 6 H 1.48499 * 109.47156 * 149.99618 * 3 2 1 7 7 C 1.38954 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99462 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00039 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99661 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00207 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99926 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.46869 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99456 * 180.02562 * 13 12 10 15 15 O 1.21493 * 120.00605 * 0.02562 * 14 13 12 16 16 C 1.48334 * 119.99782 * 180.02562 * 14 13 12 17 17 C 1.42273 * 126.94020 * 180.02562 * 16 14 13 18 18 C 1.35315 * 103.92101 * 179.97438 * 17 16 14 19 19 C 1.50701 * 126.66059 * 179.97438 * 18 17 16 20 20 N 1.46902 * 109.47222 * 90.00421 * 19 18 17 21 21 C 1.48529 * 110.99645 * 52.59903 * 20 19 18 22 22 C 1.54941 * 103.22612 * 159.71944 * 21 20 19 23 23 C 1.54598 * 102.92059 * 322.58903 * 22 21 20 24 24 C 1.47895 * 110.99817 * 169.99456 * 20 19 18 25 25 O 1.34018 * 106.67104 * 0.02562 * 18 17 16 26 26 N 1.20904 * 111.84252 * 359.97438 * 25 18 17 27 27 H 0.97005 * 119.99939 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00164 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47055 * 60.00303 * 12 10 9 30 30 H 1.08997 * 109.47389 * 299.99659 * 12 10 9 31 31 H 0.96995 * 120.00509 * 0.02562 * 13 12 10 32 32 H 1.07999 * 128.03464 * 0.26327 * 17 16 14 33 33 H 1.09005 * 109.46984 * 210.00082 * 19 18 17 34 34 H 1.08998 * 109.47396 * 330.00345 * 19 18 17 35 35 H 1.08998 * 110.67542 * 278.15597 * 21 20 19 36 36 H 1.09007 * 110.67117 * 41.28868 * 21 20 19 37 37 H 1.08994 * 110.72781 * 204.22492 * 22 21 20 38 38 H 1.09002 * 110.72019 * 80.94295 * 22 21 20 39 39 H 1.08998 * 110.30526 * 263.03785 * 23 22 21 40 40 H 1.09000 * 110.30715 * 140.86973 * 23 22 21 41 41 H 1.08995 * 109.92266 * 333.50878 * 24 20 19 42 42 H 1.09003 * 109.91891 * 94.60858 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3742 -3.9980 0.0023 15 8 8.1637 -3.0746 0.0028 16 6 7.8686 -5.3965 0.0024 17 6 9.2257 -5.8236 0.0035 18 6 9.1420 -7.1741 0.0036 19 6 10.2929 -8.1470 0.0041 20 7 10.6664 -8.4631 1.3893 21 6 9.4840 -8.9062 2.1714 22 6 10.1133 -9.6713 3.3626 23 6 11.3180 -10.3908 2.7137 24 6 11.6254 -9.5879 1.4361 25 8 7.8368 -7.4784 0.0021 26 7 7.1439 -6.4876 0.0015 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9241 -1.8567 0.8911 30 1 5.9241 -1.8567 -0.8889 31 1 5.4188 -4.4890 0.0016 32 1 10.1158 -5.2119 0.0084 33 1 9.9960 -9.0613 -0.5098 34 1 11.1451 -7.7020 -0.5094 35 1 8.9123 -8.0479 2.5243 36 1 8.8559 -9.5697 1.5767 37 1 9.4079 -10.3937 3.7731 38 1 10.4482 -8.9769 4.1332 39 1 11.0539 -11.4176 2.4608 40 1 12.1756 -10.3745 3.3863 41 1 11.4970 -10.2222 0.5591 42 1 12.6454 -9.2050 1.4711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343743517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:17 Heat of formation + Delta-G solvation = -22.512269 kcal Electronic energy + Delta-G solvation = -25958.711457 eV Core-core repulsion = 21941.393226 eV Total energy + Delta-G solvation = -4017.318231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.27761 -41.16494 -40.06933 -39.84395 -36.39957 -35.58125 -35.28848 -34.60704 -33.87915 -31.79222 -29.87774 -29.72231 -27.10517 -26.72654 -25.09547 -23.84830 -22.17489 -21.70877 -21.57038 -21.25245 -20.53283 -19.03501 -18.90922 -18.26549 -17.46165 -17.11914 -16.95080 -16.83652 -16.67428 -16.56203 -15.69931 -15.63189 -15.46059 -15.10754 -14.84428 -14.44579 -14.37447 -14.13165 -14.10169 -13.79457 -13.58430 -12.99917 -12.99411 -12.68992 -12.47827 -12.37439 -12.19262 -12.02166 -12.02088 -11.67331 -11.63283 -11.62050 -11.40335 -10.74387 -10.69098 -10.45459 -10.34706 -9.44834 -8.48595 -6.11551 -0.06778 0.54513 1.29184 1.32209 1.42611 1.59879 1.72426 1.88612 1.92655 2.18456 2.69936 2.82472 3.04677 3.07007 3.31484 3.73241 3.78397 3.86747 3.91181 4.02180 4.11375 4.19707 4.30410 4.30938 4.36793 4.52996 4.60473 4.64588 4.74228 4.85563 4.92973 4.96682 4.99184 5.10861 5.20536 5.32783 5.44070 5.81815 5.83382 5.93316 6.12092 6.43813 6.72062 6.73686 6.94876 7.23429 7.72746 8.67778 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032027 B = 0.002020 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.057342 B =13860.868247 C =14181.897218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.335 4.335 8 H 0.061 0.939 9 N -0.573 5.573 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.116 3.884 13 N -0.699 5.699 14 C 0.601 3.399 15 O -0.546 6.546 16 C -0.048 4.048 17 C -0.159 4.159 18 C -0.023 4.023 19 C 0.130 3.870 20 N -0.527 5.527 21 C 0.027 3.973 22 C -0.124 4.124 23 C -0.129 4.129 24 C 0.035 3.965 25 O 0.132 5.868 26 N -0.346 5.346 27 H 0.282 0.718 28 H 0.394 0.606 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.414 0.586 32 H 0.199 0.801 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.047 -17.280 2.021 33.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.208 4.208 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.154 1.154 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.011 4.011 13 N -0.352 5.352 14 C 0.386 3.614 15 O -0.423 6.423 16 C -0.205 4.205 17 C -0.182 4.182 18 C -0.086 4.086 19 C 0.002 3.998 20 N -0.253 5.253 21 C -0.101 4.101 22 C -0.163 4.163 23 C -0.167 4.167 24 C -0.092 4.092 25 O 0.052 5.948 26 N -0.044 5.044 27 H 0.092 0.908 28 H 0.230 0.770 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.252 0.748 32 H 0.216 0.784 33 H 0.101 0.899 34 H 0.156 0.844 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.842 -16.844 2.223 32.617 hybrid contribution -0.617 0.452 -0.310 0.825 sum 27.225 -16.392 1.913 31.837 Atomic orbital electron populations 1.69783 1.08095 1.29584 1.48882 1.26116 0.96479 1.02724 0.95508 0.85415 0.79592 0.76740 0.80176 1.17933 1.19713 1.15434 1.19024 0.80918 0.95305 1.51099 0.92068 1.41875 1.06147 1.07303 1.65943 1.20454 0.89973 0.83970 0.82746 1.90554 1.70738 1.32491 1.56558 1.21053 0.89905 0.83949 1.06143 1.45642 1.06862 1.09665 1.73024 1.16982 0.81816 0.86124 0.76489 1.90765 1.55730 1.44375 1.51428 1.23391 0.93685 0.93595 1.09863 1.22615 0.96649 0.94081 1.04872 1.24737 0.85465 0.95787 1.02651 1.21021 0.91237 0.95958 0.91561 1.64987 1.11443 1.38714 1.10110 1.23278 0.92792 0.98376 0.95611 1.22474 0.97722 0.99082 0.96977 1.22417 0.98479 0.99195 0.96576 1.22983 0.97169 0.90664 0.98397 1.84776 1.16319 1.28596 1.65100 1.74275 1.19742 0.94334 1.16080 0.90814 0.77017 0.86772 0.86592 0.74839 0.78395 0.89926 0.84425 0.92387 0.92777 0.90238 0.91366 0.90347 0.90154 0.91795 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.65 13.96 21.66 0.30 -54.35 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 3 Si 0.96 38.09 27.74 68.60 1.90 39.99 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 7 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16 8 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 9 N -0.57 -26.71 5.09 -306.98 -1.56 -28.27 16 10 C 0.44 19.89 7.85 87.66 0.69 20.57 16 11 O -0.62 -33.46 15.24 -3.08 -0.05 -33.51 16 12 C 0.12 3.93 6.15 85.63 0.53 4.46 16 13 N -0.70 -24.10 5.53 -469.21 -2.59 -26.70 16 14 C 0.60 19.53 7.85 86.93 0.68 20.21 16 15 O -0.55 -19.05 16.95 -3.69 -0.06 -19.12 16 16 C -0.05 -1.35 7.19 42.96 0.31 -1.04 16 17 C -0.16 -3.31 10.92 22.60 0.25 -3.06 16 18 C -0.02 -0.39 5.75 25.01 0.14 -0.25 16 19 C 0.13 1.23 5.59 85.56 0.48 1.71 16 20 N -0.53 -6.11 5.39 -887.58 -4.78 -10.89 16 21 C 0.03 0.37 5.43 86.65 0.47 0.84 16 22 C -0.12 -1.33 7.06 31.80 0.22 -1.10 16 23 C -0.13 -0.91 6.93 31.47 0.22 -0.69 16 24 C 0.03 0.24 6.69 86.45 0.58 0.82 16 25 O 0.13 2.95 10.98 71.86 0.79 3.74 16 26 N -0.35 -9.82 11.84 -49.50 -0.59 -10.41 16 27 H 0.28 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 29 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.41 15.44 7.20 -92.71 -0.67 14.78 16 32 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.08 0.52 7.81 -2.38 -0.02 0.51 16 34 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 1.06 7.90 -2.39 -0.02 1.04 16 36 H 0.05 0.71 8.02 -2.38 -0.02 0.69 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.06 0.28 7.57 -2.39 -0.02 0.26 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -76.32 359.67 -0.94 -77.26 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.18 Total: 38.17 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 5.89 Total: 24.09 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -9.22 Total: -130.62 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: 0.68 Total: -48.88 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -76.32 -0.94 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343743517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.747 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds