Wall clock time and date at job start Fri Apr 10 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39697 * 125.76769 * 2 1 4 4 C 1.36221 * 107.85749 * 180.02562 * 3 2 1 5 5 N 1.39196 * 126.27059 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00191 * 0.02898 * 5 4 3 7 7 O 1.21392 * 120.00269 * 359.97438 * 6 5 4 8 8 C 1.49312 * 120.00327 * 179.97438 * 6 5 4 9 9 O 1.21369 * 119.99460 * 0.02562 * 8 6 5 10 10 N 1.34769 * 120.00327 * 180.02562 * 8 6 5 11 11 C 1.47426 * 125.64968 * 359.95746 * 10 8 6 12 12 C 1.55118 * 104.94495 * 204.03960 * 11 10 8 13 13 C 1.55154 * 101.48474 * 323.22202 * 12 11 10 14 14 O 1.42896 * 110.72198 * 276.82816 * 13 12 11 15 15 C 1.50702 * 110.71956 * 153.73211 * 13 12 11 16 16 H 1.08002 * 120.00299 * 2.44550 * 15 13 12 17 17 C 1.37884 * 119.99942 * 182.16109 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.47019 * 125.65076 * 179.97438 * 10 8 6 24 24 N 1.35851 * 107.45630 * 0.22867 * 4 3 2 25 25 C 1.46499 * 126.10216 * 179.77158 * 24 4 3 26 26 N 1.30846 * 125.77370 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47367 * 89.99475 * 1 2 3 28 28 H 1.08995 * 109.46801 * 210.00226 * 1 2 3 29 29 H 1.09002 * 109.46985 * 329.99204 * 1 2 3 30 30 H 1.08002 * 126.07515 * 0.02641 * 3 2 1 31 31 H 0.96999 * 119.99761 * 180.02562 * 5 4 3 32 32 H 1.09001 * 110.36602 * 323.00573 * 11 10 8 33 33 H 1.09000 * 110.36894 * 85.32760 * 11 10 8 34 34 H 1.09005 * 111.16464 * 205.12953 * 12 11 10 35 35 H 1.08998 * 110.93689 * 81.21185 * 12 11 10 36 36 H 0.96700 * 114.00666 * 177.55588 * 14 13 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.88427 * 59.48270 * 23 10 8 39 39 H 1.09008 * 110.01210 * 298.39333 * 23 10 8 40 40 H 1.09000 * 109.47109 * 89.99524 * 25 24 4 41 41 H 1.08997 * 109.47347 * 210.00128 * 25 24 4 42 42 H 1.09004 * 109.46964 * 330.00005 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7146 -0.0006 5 7 4.7484 1.5292 -0.0013 6 6 4.6118 2.8699 -0.0008 7 8 3.5045 3.3673 -0.0003 8 6 5.8225 3.7438 -0.0010 9 8 6.9297 3.2466 -0.0020 10 7 5.6859 5.0845 -0.0001 11 6 4.4070 5.8179 0.0003 12 6 4.7410 7.2047 -0.6091 13 6 6.1553 7.4656 -0.0269 14 8 6.0669 8.0054 1.2932 15 6 6.9405 8.3857 -0.9257 16 1 6.4813 8.7949 -1.8135 17 6 8.2433 8.7100 -0.6116 18 7 8.8025 8.2118 0.4695 19 14 9.2140 9.8566 -1.7216 20 1 8.3636 10.2770 -2.8640 21 1 9.6336 11.0544 -0.9503 22 1 10.4165 9.1507 -2.2324 23 6 6.7876 6.0581 0.0004 24 7 3.6090 -0.6439 -0.0061 25 6 4.7857 -1.5164 -0.0133 26 7 2.2719 -1.0616 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 1.9870 2.1597 0.0004 31 1 5.6333 1.1318 -0.0020 32 1 3.6720 5.2991 -0.6150 33 1 4.0364 5.9337 1.0188 34 1 4.0339 7.9631 -0.2727 35 1 4.7696 7.1551 -1.6976 36 1 6.9239 8.1517 1.7165 37 1 9.7192 8.4396 0.6903 38 1 7.4099 5.9142 -0.8828 39 1 7.3898 5.9395 0.9013 40 1 5.0809 -1.7370 1.0125 41 1 4.5460 -2.4456 -0.5302 42 1 5.6061 -1.0158 -0.5277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349152672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:23 Heat of formation + Delta-G solvation = -21.598440 kcal Electronic energy + Delta-G solvation = -27364.506540 eV Core-core repulsion = 23347.227935 eV Total energy + Delta-G solvation = -4017.278605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73747 -40.38115 -38.64411 -37.40706 -35.51631 -34.37327 -33.69825 -32.27873 -30.31749 -30.00082 -29.17896 -28.02566 -26.14082 -25.66328 -24.28214 -22.53397 -21.11014 -20.48827 -19.73682 -19.23832 -17.84295 -17.29187 -17.01607 -16.55073 -16.32298 -15.66328 -15.46822 -15.19551 -14.74125 -14.47253 -14.21619 -13.87470 -13.70468 -13.33672 -13.16055 -13.06428 -12.99007 -12.64001 -12.50664 -12.47455 -12.39562 -11.86092 -11.62168 -11.25029 -11.14664 -11.10679 -10.87596 -10.67547 -10.61806 -10.52303 -10.24879 -9.46789 -9.31793 -8.97298 -8.75020 -8.42729 -8.31478 -8.16150 -6.37637 -4.46057 1.15098 1.75849 1.95173 2.60696 2.71596 3.15214 3.24575 3.28071 3.36059 3.55410 4.20211 4.23852 4.36080 4.76570 4.86289 4.90600 5.00614 5.11029 5.34772 5.38939 5.48785 5.55130 5.64992 5.73052 5.73950 5.79561 5.91510 5.99941 6.19018 6.40534 6.58973 6.65129 6.69081 6.72165 6.72932 6.92584 7.10219 7.22714 7.53311 7.62484 7.64775 7.79739 7.92036 8.17299 8.58258 9.22233 9.32016 10.70248 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.002806 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.532301 B = 9976.563852 C =10606.202564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.084 3.916 3 C -0.274 4.274 4 C 0.308 3.692 5 N -0.628 5.628 6 C 0.519 3.481 7 O -0.479 6.479 8 C 0.514 3.486 9 O -0.534 6.534 10 N -0.568 5.568 11 C 0.095 3.905 12 C -0.120 4.120 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.536 4.536 16 H 0.069 0.931 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.098 3.902 24 N -0.393 5.393 25 C 0.099 3.901 26 N -0.291 5.291 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.421 0.579 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.384 0.616 37 H 0.271 0.729 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 -14.635 -0.677 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.306 4.306 4 C 0.089 3.911 5 N -0.277 5.277 6 C 0.301 3.699 7 O -0.349 6.349 8 C 0.295 3.705 9 O -0.414 6.414 10 N -0.300 5.300 11 C -0.027 4.027 12 C -0.158 4.158 13 C 0.207 3.793 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.022 4.022 24 N -0.181 5.181 25 C -0.042 4.042 26 N -0.115 5.115 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.192 0.808 31 H 0.259 0.741 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.236 0.764 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.934 -15.886 -0.696 18.749 hybrid contribution 2.040 1.070 -0.364 2.332 sum -7.894 -14.816 -1.059 16.821 Atomic orbital electron populations 1.20181 0.86383 1.03355 1.03036 1.22229 0.97076 0.90488 0.98409 1.21592 0.88744 1.01375 1.18842 1.18098 0.88677 0.82310 1.02029 1.42507 1.08162 1.05555 1.71513 1.20563 0.90756 0.81628 0.76930 1.90670 1.26599 1.73148 1.44497 1.19045 0.87921 0.82603 0.80960 1.90758 1.25950 1.73490 1.51156 1.48689 1.11713 1.03594 1.65962 1.22758 0.85032 0.93019 1.01933 1.22858 0.98506 0.94440 0.99973 1.19519 0.90064 0.87524 0.82182 1.86115 1.36398 1.86023 1.30708 1.21563 0.97344 1.28906 1.09639 0.91258 1.25094 0.97482 0.95467 0.95305 1.69639 1.14896 1.43985 1.24980 0.86318 0.79649 0.80305 0.80481 1.19525 1.20686 1.20764 1.23349 0.87832 0.88408 1.02639 1.48592 1.06215 1.02003 1.61292 1.21845 0.83830 0.95057 1.03516 1.77368 0.84846 1.21654 1.27644 0.90428 0.90998 0.90146 0.80776 0.74087 0.89364 0.90987 0.90072 0.90375 0.76446 0.91922 0.90683 0.90839 0.90614 0.88754 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.44 36.01 0.38 -0.24 16 2 C 0.08 1.06 7.20 -82.47 -0.59 0.47 16 3 C -0.27 -3.84 9.58 -39.76 -0.38 -4.22 16 4 C 0.31 4.17 7.68 -152.86 -1.17 3.00 16 5 N -0.63 -8.26 5.40 -11.80 -0.06 -8.33 16 6 C 0.52 8.15 7.82 -11.65 -0.09 8.06 16 7 O -0.48 -7.83 10.90 5.46 0.06 -7.77 16 8 C 0.51 9.45 7.91 -11.65 -0.09 9.36 16 9 O -0.53 -10.70 16.80 5.48 0.09 -10.61 16 10 N -0.57 -11.19 3.33 -170.95 -0.57 -11.76 16 11 C 0.09 1.70 6.06 -2.42 -0.01 1.68 16 12 C -0.12 -2.32 6.25 -24.47 -0.15 -2.48 16 13 C 0.25 5.73 0.85 -89.94 -0.08 5.66 16 14 O -0.58 -14.14 13.07 -35.23 -0.46 -14.60 16 15 C -0.54 -13.44 8.11 -34.44 -0.28 -13.72 16 16 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 17 C 0.07 1.75 5.28 -17.82 -0.09 1.65 16 18 N -0.90 -22.84 10.96 55.43 0.61 -22.23 16 19 Si 0.91 19.77 29.54 -169.99 -5.02 14.75 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.10 2.23 5.39 -3.07 -0.02 2.22 16 24 N -0.39 -4.77 4.04 -67.07 -0.27 -5.05 16 25 C 0.10 0.75 11.30 59.85 0.68 1.43 16 26 N -0.29 -3.90 12.56 33.64 0.42 -3.47 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.18 2.54 5.83 -52.49 -0.31 2.23 16 31 H 0.42 4.71 7.46 -40.82 -0.30 4.40 16 32 H 0.09 1.45 6.15 -51.93 -0.32 1.13 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 36 H 0.38 9.54 7.21 45.56 0.33 9.87 16 37 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.07 1.83 7.81 -51.93 -0.41 1.42 16 39 H 0.07 1.80 8.00 -51.92 -0.42 1.39 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.49 7.53 -51.93 -0.39 0.10 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -29.52 352.88 -6.53 -36.06 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -4.73 Total: 14.82 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -1.91 Total: 12.88 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.13 Total: -50.84 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.31 Total: -32.98 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.52 -6.53 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349152672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds