Wall clock time and date at job start Fri Apr 10 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39697 * 125.76769 * 2 1 4 4 C 1.36221 * 107.85749 * 180.02562 * 3 2 1 5 5 N 1.39196 * 126.27059 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00191 * 0.02898 * 5 4 3 7 7 O 1.21392 * 120.00269 * 359.97438 * 6 5 4 8 8 C 1.49312 * 120.00327 * 179.97438 * 6 5 4 9 9 O 1.21369 * 119.99460 * 0.02562 * 8 6 5 10 10 N 1.34769 * 120.00327 * 180.02562 * 8 6 5 11 11 C 1.47426 * 125.64968 * 359.95746 * 10 8 6 12 12 C 1.55118 * 104.94495 * 204.03960 * 11 10 8 13 13 C 1.55154 * 101.48474 * 323.22202 * 12 11 10 14 14 O 1.42896 * 110.72198 * 276.82816 * 13 12 11 15 15 C 1.50702 * 110.71956 * 153.73211 * 13 12 11 16 16 H 1.08002 * 120.00299 * 2.44550 * 15 13 12 17 17 C 1.37884 * 119.99942 * 182.16109 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.47019 * 125.65076 * 179.97438 * 10 8 6 24 24 N 1.35851 * 107.45630 * 0.22867 * 4 3 2 25 25 C 1.46499 * 126.10216 * 179.77158 * 24 4 3 26 26 N 1.30846 * 125.77370 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47367 * 89.99475 * 1 2 3 28 28 H 1.08995 * 109.46801 * 210.00226 * 1 2 3 29 29 H 1.09002 * 109.46985 * 329.99204 * 1 2 3 30 30 H 1.08002 * 126.07515 * 0.02641 * 3 2 1 31 31 H 0.96999 * 119.99761 * 180.02562 * 5 4 3 32 32 H 1.09001 * 110.36602 * 323.00573 * 11 10 8 33 33 H 1.09000 * 110.36894 * 85.32760 * 11 10 8 34 34 H 1.09005 * 111.16464 * 205.12953 * 12 11 10 35 35 H 1.08998 * 110.93689 * 81.21185 * 12 11 10 36 36 H 0.96700 * 114.00666 * 177.55588 * 14 13 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.88427 * 59.48270 * 23 10 8 39 39 H 1.09008 * 110.01210 * 298.39333 * 23 10 8 40 40 H 1.09000 * 109.47109 * 89.99524 * 25 24 4 41 41 H 1.08997 * 109.47347 * 210.00128 * 25 24 4 42 42 H 1.09004 * 109.46964 * 330.00005 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7146 -0.0006 5 7 4.7484 1.5292 -0.0013 6 6 4.6118 2.8699 -0.0008 7 8 3.5045 3.3673 -0.0003 8 6 5.8225 3.7438 -0.0010 9 8 6.9297 3.2466 -0.0020 10 7 5.6859 5.0845 -0.0001 11 6 4.4070 5.8179 0.0003 12 6 4.7410 7.2047 -0.6091 13 6 6.1553 7.4656 -0.0269 14 8 6.0669 8.0054 1.2932 15 6 6.9405 8.3857 -0.9257 16 1 6.4813 8.7949 -1.8135 17 6 8.2433 8.7100 -0.6116 18 7 8.8025 8.2118 0.4695 19 14 9.2140 9.8566 -1.7216 20 1 8.3636 10.2770 -2.8640 21 1 9.6336 11.0544 -0.9503 22 1 10.4165 9.1507 -2.2324 23 6 6.7876 6.0581 0.0004 24 7 3.6090 -0.6439 -0.0061 25 6 4.7857 -1.5164 -0.0133 26 7 2.2719 -1.0616 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 1.9870 2.1597 0.0004 31 1 5.6333 1.1318 -0.0020 32 1 3.6720 5.2991 -0.6150 33 1 4.0364 5.9337 1.0188 34 1 4.0339 7.9631 -0.2727 35 1 4.7696 7.1551 -1.6976 36 1 6.9239 8.1517 1.7165 37 1 9.7192 8.4396 0.6903 38 1 7.4099 5.9142 -0.8828 39 1 7.3898 5.9395 0.9013 40 1 5.0809 -1.7370 1.0125 41 1 4.5460 -2.4456 -0.5302 42 1 5.6061 -1.0158 -0.5277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349152672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:22 Heat of formation + Delta-G solvation = -42.972375 kcal Electronic energy + Delta-G solvation = -27365.433383 eV Core-core repulsion = 23347.227935 eV Total energy + Delta-G solvation = -4018.205448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.80533 -41.69365 -40.09327 -39.01943 -36.78145 -35.93170 -34.60974 -34.20517 -31.94859 -30.85489 -30.12171 -29.71146 -27.76908 -26.51954 -25.77690 -23.99882 -22.29604 -21.57290 -21.43429 -20.49762 -19.16104 -18.94101 -18.27173 -17.93428 -17.59524 -17.16314 -16.70692 -16.63344 -16.25236 -15.85641 -15.64033 -14.87847 -14.79521 -14.75143 -14.68344 -14.35556 -14.10285 -14.06082 -13.56076 -13.46042 -13.32048 -13.24689 -13.12762 -12.88882 -12.70419 -12.55826 -12.34586 -12.24873 -12.15627 -12.03644 -11.62176 -11.21365 -10.82150 -10.59930 -10.31406 -9.87915 -9.81059 -9.32827 -8.27761 -6.42767 -0.11786 0.60754 0.85896 1.41398 1.45851 1.55727 1.58903 1.68180 2.01524 2.26385 2.39339 2.97130 3.00659 3.46451 3.77706 3.95096 4.04037 4.12607 4.26167 4.30537 4.34229 4.39527 4.53847 4.59002 4.61744 4.75838 4.81583 4.87495 4.93778 4.97100 5.06919 5.10146 5.17029 5.32424 5.44236 5.66290 5.73407 5.75373 5.84462 6.03026 6.24246 6.39360 6.64000 6.65070 6.68755 7.28361 7.36586 8.78729 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.002806 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.532301 B = 9976.563852 C =10606.202564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.079 3.921 3 C -0.291 4.291 4 C 0.296 3.704 5 N -0.612 5.612 6 C 0.530 3.470 7 O -0.484 6.484 8 C 0.515 3.485 9 O -0.553 6.553 10 N -0.576 5.576 11 C 0.104 3.896 12 C -0.114 4.114 13 C 0.233 3.767 14 O -0.587 6.587 15 C -0.555 4.555 16 H 0.068 0.932 17 C 0.028 3.972 18 N -0.915 5.915 19 Si 0.963 3.037 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.282 1.282 23 C 0.116 3.884 24 N -0.390 5.390 25 C 0.086 3.914 26 N -0.308 5.308 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.431 0.569 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.378 0.622 37 H 0.271 0.729 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -15.618 -1.313 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.323 4.323 4 C 0.076 3.924 5 N -0.261 5.261 6 C 0.311 3.689 7 O -0.355 6.355 8 C 0.297 3.703 9 O -0.433 6.433 10 N -0.308 5.308 11 C -0.017 4.017 12 C -0.152 4.152 13 C 0.193 3.807 14 O -0.396 6.396 15 C -0.593 4.593 16 H 0.086 0.914 17 C -0.173 4.173 18 N -0.554 5.554 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.208 1.208 23 C -0.006 4.006 24 N -0.178 5.178 25 C -0.053 4.053 26 N -0.132 5.132 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.184 0.816 31 H 0.270 0.730 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.228 0.772 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.989 -16.916 -1.334 20.217 hybrid contribution 2.375 1.279 -0.149 2.702 sum -8.614 -15.638 -1.484 17.915 Atomic orbital electron populations 1.20321 0.83959 1.04390 1.04186 1.22755 0.98703 0.89670 0.97527 1.21688 0.89423 1.01581 1.19569 1.18108 0.88419 0.83125 1.02742 1.42207 1.08830 1.04593 1.70492 1.19810 0.89370 0.82169 0.77572 1.90673 1.26220 1.73473 1.45169 1.19489 0.88689 0.82367 0.79760 1.90742 1.27136 1.73831 1.51557 1.48662 1.11419 1.03978 1.66724 1.22775 0.84459 0.92170 1.02324 1.22860 0.96351 0.95568 1.00402 1.19724 0.92306 0.87171 0.81543 1.86107 1.35950 1.86215 1.31330 1.21845 0.97939 1.29490 1.10006 0.91358 1.25777 0.98362 0.96717 0.96457 1.69728 1.15049 1.44681 1.25967 0.85424 0.78231 0.78505 0.78980 1.19050 1.20520 1.20838 1.22852 0.88201 0.89433 1.00146 1.48915 1.06871 1.01792 1.60260 1.22238 0.82887 0.95222 1.04974 1.77337 0.85512 1.22229 1.28134 0.89121 0.90034 0.89040 0.81568 0.72952 0.87333 0.90839 0.88980 0.89507 0.77183 0.91909 0.93005 0.93461 0.89199 0.87436 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.44 71.24 0.74 -0.33 16 2 C 0.08 1.88 7.20 43.06 0.31 2.19 16 3 C -0.29 -7.78 9.58 22.15 0.21 -7.56 16 4 C 0.30 7.56 7.68 131.25 1.01 8.57 16 5 N -0.61 -15.20 5.40 -309.58 -1.67 -16.87 16 6 C 0.53 15.98 7.82 87.23 0.68 16.67 16 7 O -0.48 -15.13 10.90 -3.38 -0.04 -15.17 16 8 C 0.51 18.69 7.91 87.23 0.69 19.38 16 9 O -0.55 -22.07 16.80 -3.31 -0.06 -22.12 16 10 N -0.58 -22.59 3.33 -813.11 -2.71 -25.29 16 11 C 0.10 3.61 6.06 86.93 0.53 4.13 16 12 C -0.11 -4.31 6.25 32.06 0.20 -4.11 16 13 C 0.23 10.85 0.85 -10.35 -0.01 10.84 16 14 O -0.59 -28.81 13.07 -148.98 -1.95 -30.76 16 15 C -0.55 -27.91 8.11 25.60 0.21 -27.70 16 16 H 0.07 3.37 7.77 -2.91 -0.02 3.34 16 17 C 0.03 1.40 5.28 84.66 0.45 1.85 16 18 N -0.91 -47.41 10.96 21.45 0.24 -47.17 16 19 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.12 5.37 5.39 86.73 0.47 5.84 16 24 N -0.39 -8.78 4.04 -366.12 -1.48 -10.26 16 25 C 0.09 1.12 11.30 127.77 1.44 2.56 16 26 N -0.31 -7.72 12.56 -47.49 -0.60 -8.32 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.17 4.67 5.83 -2.91 -0.02 4.65 16 31 H 0.43 8.93 7.46 -92.71 -0.69 8.24 16 32 H 0.11 3.36 6.15 -2.39 -0.01 3.34 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16 36 H 0.38 19.27 7.21 -74.06 -0.53 18.74 16 37 H 0.27 13.45 8.31 -92.70 -0.77 12.68 16 38 H 0.05 2.60 7.81 -2.39 -0.02 2.58 16 39 H 0.05 2.40 8.00 -2.38 -0.02 2.38 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 0.94 7.53 -2.38 -0.02 0.92 16 Total: -1.00 -62.79 352.88 0.56 -62.23 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.14 Total: 38.82 kcal Atomic # 6 Polarization: 25.40 SS G_CDS: 6.93 Total: 32.33 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -6.22 Total: -107.91 kcal Atomic # 8 Polarization: -66.01 SS G_CDS: -2.04 Total: -68.05 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -62.79 0.56 -62.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349152672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.262 kcal (2) G-P(sol) polarization free energy of solvation -62.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds