Wall clock time and date at job start Fri Apr 10 2020 18:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39694 * 125.77187 * 2 1 4 4 C 1.36219 * 107.85789 * 180.20371 * 3 2 1 5 5 N 1.39194 * 126.27113 * 179.85228 * 4 3 2 6 6 C 1.34780 * 119.99780 * 359.68725 * 5 4 3 7 7 O 1.21390 * 120.00253 * 0.02562 * 6 5 4 8 8 C 1.49311 * 119.99747 * 180.02562 * 6 5 4 9 9 O 1.21367 * 119.99973 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99990 * 179.97438 * 8 6 5 11 11 C 1.47425 * 125.64767 * 359.68905 * 10 8 6 12 12 C 1.54910 * 104.83231 * 156.13676 * 11 10 8 13 13 C 1.55160 * 101.58122 * 37.00939 * 12 11 10 14 14 O 1.42904 * 110.71835 * 82.86029 * 13 12 11 15 15 C 1.50694 * 110.87022 * 206.06013 * 13 12 11 16 16 H 1.08000 * 120.00178 * 355.06896 * 15 13 12 17 17 C 1.37878 * 119.99901 * 175.06033 * 15 13 12 18 18 N 1.31514 * 120.00119 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00161 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47018 * 90.00429 * 19 17 15 21 21 H 1.48498 * 109.47318 * 210.00317 * 19 17 15 22 22 H 1.48499 * 109.47125 * 330.00548 * 19 17 15 23 23 C 1.47026 * 125.65100 * 179.97438 * 10 8 6 24 24 N 1.35849 * 107.45480 * 359.58609 * 4 3 2 25 25 C 1.46500 * 126.09524 * 180.24481 * 24 4 3 26 26 N 1.30853 * 125.77095 * 179.74607 * 2 1 3 27 27 H 1.09002 * 109.47091 * 270.27903 * 1 2 3 28 28 H 1.09000 * 109.47394 * 30.28063 * 1 2 3 29 29 H 1.09005 * 109.47479 * 150.28373 * 1 2 3 30 30 H 1.08002 * 126.07032 * 0.09047 * 3 2 1 31 31 H 0.97004 * 120.00335 * 179.68728 * 5 4 3 32 32 H 1.09001 * 110.36478 * 274.97629 * 11 10 8 33 33 H 1.08998 * 110.36859 * 37.30006 * 11 10 8 34 34 H 1.08991 * 111.00552 * 278.93287 * 12 11 10 35 35 H 1.09004 * 111.03615 * 155.09334 * 12 11 10 36 36 H 0.96696 * 113.99643 * 185.02224 * 14 13 12 37 37 H 0.96997 * 120.00198 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.87531 * 300.21113 * 23 10 8 39 39 H 1.08996 * 109.88343 * 61.21833 * 23 10 8 40 40 H 1.08998 * 109.47649 * 90.00064 * 25 24 4 41 41 H 1.09004 * 109.46737 * 210.00143 * 25 24 4 42 42 H 1.09001 * 109.47528 * 329.99685 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3235 1.1334 0.0000 4 6 3.6197 0.7144 -0.0046 5 7 4.7484 1.5289 -0.0091 6 6 4.6118 2.8698 -0.0154 7 8 3.5044 3.3671 -0.0168 8 6 5.8226 3.7435 -0.0208 9 8 6.9297 3.2463 -0.0189 10 7 5.6860 5.0843 -0.0277 11 6 4.4071 5.8176 -0.0372 12 6 4.7415 7.2057 0.5638 13 6 6.1554 7.4654 -0.0200 14 8 6.0662 7.9924 -1.3453 15 6 6.9410 8.3944 0.8693 16 1 6.4705 8.8425 1.7319 17 6 8.2606 8.6721 0.5816 18 7 8.8334 8.1268 -0.4691 19 14 9.2346 9.8231 1.6843 20 1 9.8929 9.0389 2.7599 21 1 10.2676 10.5235 0.8794 22 1 8.3179 10.8219 2.2901 23 6 6.7877 6.0578 -0.0330 24 7 3.6088 -0.6440 0.0020 25 6 4.7857 -1.5165 0.0052 26 7 2.2718 -1.0617 0.0047 27 1 -0.3633 0.0050 1.0277 28 1 -0.3634 0.8874 -0.5182 29 1 -0.3634 -0.8925 -0.5094 30 1 1.9870 2.1596 0.0014 31 1 5.6333 1.1316 -0.0076 32 1 4.0388 5.9247 -1.0574 33 1 3.6707 5.3041 0.5810 34 1 4.7700 7.1635 1.6525 35 1 4.0332 7.9607 0.2225 36 1 6.9212 8.1003 -1.7840 37 1 9.7616 8.3224 -0.6717 38 1 7.4072 5.9213 0.8535 39 1 7.3921 5.9289 -0.9308 40 1 5.0785 -1.7280 1.0336 41 1 4.5470 -2.4503 -0.5040 42 1 5.6072 -1.0205 -0.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349152674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:27 Heat of formation + Delta-G solvation = -21.512942 kcal Electronic energy + Delta-G solvation = -27373.873600 eV Core-core repulsion = 23356.598703 eV Total energy + Delta-G solvation = -4017.274897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73667 -40.38093 -38.64863 -37.41071 -35.51371 -34.36487 -33.69638 -32.31023 -30.31728 -30.00017 -29.17805 -28.01369 -26.13810 -25.66205 -24.27953 -22.53020 -21.10702 -20.48662 -19.74752 -19.23734 -17.84211 -17.26781 -17.01605 -16.55133 -16.32055 -15.65554 -15.46444 -15.21064 -14.73622 -14.46641 -14.23036 -13.87124 -13.71056 -13.33329 -13.17088 -13.04661 -12.99969 -12.63905 -12.50294 -12.47252 -12.39796 -11.86381 -11.61723 -11.24723 -11.12819 -11.10322 -10.86978 -10.68350 -10.62154 -10.54372 -10.25441 -9.46353 -9.30509 -8.97162 -8.74958 -8.43002 -8.31292 -8.15799 -6.36710 -4.45285 1.15277 1.76054 1.95323 2.60895 2.71684 3.16554 3.24588 3.27509 3.36339 3.55723 4.20705 4.23993 4.36318 4.76669 4.86353 4.91484 5.00664 5.11101 5.34865 5.39431 5.48810 5.55257 5.65023 5.72146 5.73315 5.79359 5.91654 5.99970 6.18860 6.41052 6.59139 6.65389 6.69270 6.72299 6.73550 6.92701 7.10092 7.22860 7.53535 7.62592 7.64871 7.80184 7.93256 8.17751 8.58930 9.20986 9.30152 10.71157 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.002816 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.102781 B = 9939.577960 C =10575.740675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.084 3.916 3 C -0.274 4.274 4 C 0.308 3.692 5 N -0.628 5.628 6 C 0.519 3.481 7 O -0.479 6.479 8 C 0.514 3.486 9 O -0.534 6.534 10 N -0.569 5.569 11 C 0.095 3.905 12 C -0.120 4.120 13 C 0.248 3.752 14 O -0.582 6.582 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.100 3.900 24 N -0.393 5.393 25 C 0.099 3.901 26 N -0.291 5.291 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.175 0.825 31 H 0.421 0.579 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.382 0.618 37 H 0.271 0.729 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 -14.574 0.511 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.306 4.306 4 C 0.089 3.911 5 N -0.277 5.277 6 C 0.301 3.699 7 O -0.349 6.349 8 C 0.295 3.705 9 O -0.413 6.413 10 N -0.300 5.300 11 C -0.027 4.027 12 C -0.158 4.158 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.534 5.534 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.021 4.021 24 N -0.181 5.181 25 C -0.043 4.043 26 N -0.115 5.115 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.192 0.808 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.973 -15.806 0.548 18.697 hybrid contribution 2.039 1.039 0.384 2.320 sum -7.934 -14.767 0.931 16.790 Atomic orbital electron populations 1.20181 0.86386 1.03352 1.03038 1.22228 0.97075 0.90489 0.98414 1.21589 0.88746 1.01375 1.18844 1.18097 0.88679 0.82312 1.02026 1.42512 1.08159 1.05559 1.71516 1.20570 0.90760 0.81627 0.76919 1.90668 1.26601 1.73144 1.44507 1.19043 0.87915 0.82610 0.80971 1.90758 1.25946 1.73489 1.51138 1.48720 1.11730 1.03616 1.65974 1.22727 0.85086 0.92988 1.01932 1.22818 0.98485 0.94446 1.00045 1.19522 0.90047 0.87645 0.82027 1.86136 1.36286 1.86781 1.29902 1.21497 0.96036 1.28274 1.11699 0.91333 1.25085 0.97570 0.95421 0.95236 1.69681 1.13819 1.43404 1.26485 0.86376 0.79514 0.80657 0.80238 1.20419 1.20958 1.19620 1.23335 0.87700 0.88307 1.02749 1.48589 1.06214 1.02005 1.61287 1.21845 0.83829 0.95073 1.03503 1.77368 0.84846 1.21654 1.27647 0.90439 0.90138 0.90997 0.80777 0.74085 0.90982 0.89362 0.90335 0.90116 0.76741 0.91913 0.90649 0.90780 0.90606 0.88759 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.44 36.00 0.38 -0.24 16 2 C 0.08 1.06 7.20 -82.47 -0.59 0.47 16 3 C -0.27 -3.84 9.58 -39.76 -0.38 -4.22 16 4 C 0.31 4.17 7.68 -152.86 -1.17 3.00 16 5 N -0.63 -8.28 5.40 -11.80 -0.06 -8.34 16 6 C 0.52 8.16 7.82 -11.65 -0.09 8.07 16 7 O -0.48 -7.84 10.90 5.46 0.06 -7.78 16 8 C 0.51 9.47 7.91 -11.65 -0.09 9.37 16 9 O -0.53 -10.72 16.80 5.48 0.09 -10.63 16 10 N -0.57 -11.21 3.33 -171.08 -0.57 -11.78 16 11 C 0.09 1.70 6.05 -2.53 -0.02 1.68 16 12 C -0.12 -2.33 6.23 -24.58 -0.15 -2.48 16 13 C 0.25 5.73 0.85 -89.94 -0.08 5.66 16 14 O -0.58 -14.04 13.08 -35.23 -0.46 -14.50 16 15 C -0.54 -13.47 8.13 -34.44 -0.28 -13.75 16 16 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 17 C 0.07 1.76 5.28 -17.82 -0.09 1.67 16 18 N -0.90 -22.84 10.96 55.43 0.61 -22.23 16 19 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 23 C 0.10 2.26 5.23 -3.07 -0.02 2.25 16 24 N -0.39 -4.78 4.04 -67.07 -0.27 -5.05 16 25 C 0.10 0.75 11.30 59.85 0.68 1.43 16 26 N -0.29 -3.90 12.56 33.64 0.42 -3.48 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.18 2.54 5.83 -52.49 -0.31 2.23 16 31 H 0.42 4.72 7.46 -40.82 -0.30 4.41 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.45 6.15 -51.93 -0.32 1.14 16 34 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.38 9.39 7.45 45.56 0.34 9.73 16 37 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.08 1.85 7.82 -51.93 -0.41 1.44 16 39 H 0.07 1.82 7.92 -51.93 -0.41 1.40 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.49 7.52 -51.93 -0.39 0.10 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -29.54 352.90 -6.52 -36.06 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -4.72 Total: 14.71 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -1.91 Total: 12.92 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.13 Total: -50.88 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.31 Total: -32.90 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.54 -6.52 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349152674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.545 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds