Wall clock time and date at job start Fri Apr 10 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39694 * 125.77187 * 2 1 4 4 C 1.36219 * 107.85789 * 180.20371 * 3 2 1 5 5 N 1.39194 * 126.27113 * 179.85228 * 4 3 2 6 6 C 1.34780 * 119.99780 * 359.68725 * 5 4 3 7 7 O 1.21390 * 120.00253 * 0.02562 * 6 5 4 8 8 C 1.49311 * 119.99747 * 180.02562 * 6 5 4 9 9 O 1.21367 * 119.99973 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99990 * 179.97438 * 8 6 5 11 11 C 1.47425 * 125.64767 * 359.68905 * 10 8 6 12 12 C 1.54910 * 104.83231 * 156.13676 * 11 10 8 13 13 C 1.55160 * 101.58122 * 37.00939 * 12 11 10 14 14 O 1.42904 * 110.71835 * 82.86029 * 13 12 11 15 15 C 1.50694 * 110.87022 * 206.06013 * 13 12 11 16 16 H 1.08000 * 120.00178 * 355.06896 * 15 13 12 17 17 C 1.37878 * 119.99901 * 175.06033 * 15 13 12 18 18 N 1.31514 * 120.00119 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00161 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47018 * 90.00429 * 19 17 15 21 21 H 1.48498 * 109.47318 * 210.00317 * 19 17 15 22 22 H 1.48499 * 109.47125 * 330.00548 * 19 17 15 23 23 C 1.47026 * 125.65100 * 179.97438 * 10 8 6 24 24 N 1.35849 * 107.45480 * 359.58609 * 4 3 2 25 25 C 1.46500 * 126.09524 * 180.24481 * 24 4 3 26 26 N 1.30853 * 125.77095 * 179.74607 * 2 1 3 27 27 H 1.09002 * 109.47091 * 270.27903 * 1 2 3 28 28 H 1.09000 * 109.47394 * 30.28063 * 1 2 3 29 29 H 1.09005 * 109.47479 * 150.28373 * 1 2 3 30 30 H 1.08002 * 126.07032 * 0.09047 * 3 2 1 31 31 H 0.97004 * 120.00335 * 179.68728 * 5 4 3 32 32 H 1.09001 * 110.36478 * 274.97629 * 11 10 8 33 33 H 1.08998 * 110.36859 * 37.30006 * 11 10 8 34 34 H 1.08991 * 111.00552 * 278.93287 * 12 11 10 35 35 H 1.09004 * 111.03615 * 155.09334 * 12 11 10 36 36 H 0.96696 * 113.99643 * 185.02224 * 14 13 12 37 37 H 0.96997 * 120.00198 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.87531 * 300.21113 * 23 10 8 39 39 H 1.08996 * 109.88343 * 61.21833 * 23 10 8 40 40 H 1.08998 * 109.47649 * 90.00064 * 25 24 4 41 41 H 1.09004 * 109.46737 * 210.00143 * 25 24 4 42 42 H 1.09001 * 109.47528 * 329.99685 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3235 1.1334 0.0000 4 6 3.6197 0.7144 -0.0046 5 7 4.7484 1.5289 -0.0091 6 6 4.6118 2.8698 -0.0154 7 8 3.5044 3.3671 -0.0168 8 6 5.8226 3.7435 -0.0208 9 8 6.9297 3.2463 -0.0189 10 7 5.6860 5.0843 -0.0277 11 6 4.4071 5.8176 -0.0372 12 6 4.7415 7.2057 0.5638 13 6 6.1554 7.4654 -0.0200 14 8 6.0662 7.9924 -1.3453 15 6 6.9410 8.3944 0.8693 16 1 6.4705 8.8425 1.7319 17 6 8.2606 8.6721 0.5816 18 7 8.8334 8.1268 -0.4691 19 14 9.2346 9.8231 1.6843 20 1 9.8929 9.0389 2.7599 21 1 10.2676 10.5235 0.8794 22 1 8.3179 10.8219 2.2901 23 6 6.7877 6.0578 -0.0330 24 7 3.6088 -0.6440 0.0020 25 6 4.7857 -1.5165 0.0052 26 7 2.2718 -1.0617 0.0047 27 1 -0.3633 0.0050 1.0277 28 1 -0.3634 0.8874 -0.5182 29 1 -0.3634 -0.8925 -0.5094 30 1 1.9870 2.1596 0.0014 31 1 5.6333 1.1316 -0.0076 32 1 4.0388 5.9247 -1.0574 33 1 3.6707 5.3041 0.5810 34 1 4.7700 7.1635 1.6525 35 1 4.0332 7.9607 0.2225 36 1 6.9212 8.1003 -1.7840 37 1 9.7616 8.3224 -0.6717 38 1 7.4072 5.9213 0.8535 39 1 7.3921 5.9289 -0.9308 40 1 5.0785 -1.7280 1.0336 41 1 4.5470 -2.4503 -0.5040 42 1 5.6072 -1.0205 -0.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349152674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:26 Heat of formation + Delta-G solvation = -42.945451 kcal Electronic energy + Delta-G solvation = -27374.802984 eV Core-core repulsion = 23356.598703 eV Total energy + Delta-G solvation = -4018.204281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80542 -41.69538 -40.09866 -39.02197 -36.77630 -35.92327 -34.60950 -34.23670 -31.94669 -30.85470 -30.12118 -29.70165 -27.76771 -26.51928 -25.77555 -23.99553 -22.29364 -21.57389 -21.44383 -20.49705 -19.13522 -18.94002 -18.27443 -17.93454 -17.59520 -17.16466 -16.70312 -16.62808 -16.26276 -15.86564 -15.64196 -14.86638 -14.80264 -14.75153 -14.68753 -14.35795 -14.10248 -14.05830 -13.56874 -13.45273 -13.32249 -13.24017 -13.12785 -12.86770 -12.70203 -12.54962 -12.35995 -12.27961 -12.15819 -12.03646 -11.62141 -11.19949 -10.81898 -10.59821 -10.31516 -9.87915 -9.80708 -9.32842 -8.27135 -6.42253 -0.11708 0.60891 0.85957 1.42467 1.45693 1.54510 1.59027 1.68196 2.01613 2.26543 2.39523 2.97505 3.01066 3.46464 3.77907 3.95087 4.03104 4.12597 4.26198 4.30749 4.34142 4.39437 4.53844 4.59061 4.62195 4.76031 4.81691 4.87479 4.94512 4.97147 5.07116 5.10206 5.17022 5.31896 5.44653 5.66317 5.72915 5.75364 5.84542 6.04329 6.24438 6.39482 6.64294 6.65078 6.69044 7.27422 7.35391 8.79115 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.002816 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.102781 B = 9939.577960 C =10575.740675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.079 3.921 3 C -0.291 4.291 4 C 0.296 3.704 5 N -0.612 5.612 6 C 0.530 3.470 7 O -0.484 6.484 8 C 0.514 3.486 9 O -0.553 6.553 10 N -0.577 5.577 11 C 0.104 3.896 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.586 6.586 15 C -0.556 4.556 16 H 0.068 0.932 17 C 0.029 3.971 18 N -0.914 5.914 19 Si 0.962 3.038 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.268 1.268 23 C 0.118 3.882 24 N -0.390 5.390 25 C 0.086 3.914 26 N -0.308 5.308 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.431 0.569 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.376 0.624 37 H 0.271 0.729 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -15.543 1.109 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.323 4.323 4 C 0.076 3.924 5 N -0.261 5.261 6 C 0.311 3.689 7 O -0.355 6.355 8 C 0.297 3.703 9 O -0.433 6.433 10 N -0.309 5.309 11 C -0.017 4.017 12 C -0.152 4.152 13 C 0.193 3.807 14 O -0.394 6.394 15 C -0.594 4.594 16 H 0.086 0.914 17 C -0.173 4.173 18 N -0.553 5.553 19 Si 0.788 3.212 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.004 4.004 24 N -0.178 5.178 25 C -0.053 4.053 26 N -0.132 5.132 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.184 0.816 31 H 0.270 0.730 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.036 -16.823 1.148 20.152 hybrid contribution 2.375 1.245 0.186 2.688 sum -8.661 -15.577 1.334 17.873 Atomic orbital electron populations 1.20321 0.83960 1.04396 1.04179 1.22755 0.98702 0.89670 0.97530 1.21686 0.89423 1.01583 1.19569 1.18108 0.88419 0.83126 1.02742 1.42212 1.08828 1.04599 1.70496 1.19815 0.89373 0.82167 0.77565 1.90672 1.26217 1.73468 1.45174 1.19489 0.88683 0.82381 0.79769 1.90742 1.27143 1.73837 1.51554 1.48693 1.11450 1.03998 1.66723 1.22745 0.84499 0.92115 1.02358 1.22820 0.96351 0.95585 1.00453 1.19718 0.92270 0.87262 0.81423 1.86128 1.35873 1.86962 1.30456 1.21793 0.96647 1.28859 1.12089 0.91413 1.25764 0.98455 0.96673 0.96359 1.69774 1.13917 1.44119 1.27460 0.85488 0.78189 0.78950 0.78613 1.20345 1.20833 1.19210 1.22831 0.88064 0.89344 1.00209 1.48912 1.06871 1.01795 1.60256 1.22238 0.82877 0.95221 1.04987 1.77338 0.85510 1.22229 1.28137 0.89148 0.89022 0.90022 0.81566 0.72954 0.90784 0.87351 0.89501 0.88999 0.77422 0.91965 0.93104 0.93364 0.89138 0.87461 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.44 71.23 0.74 -0.33 16 2 C 0.08 1.88 7.20 43.05 0.31 2.19 16 3 C -0.29 -7.78 9.58 22.15 0.21 -7.57 16 4 C 0.30 7.57 7.68 131.25 1.01 8.58 16 5 N -0.61 -15.23 5.40 -309.58 -1.67 -16.90 16 6 C 0.53 16.01 7.82 87.23 0.68 16.69 16 7 O -0.48 -15.14 10.90 -3.37 -0.04 -15.17 16 8 C 0.51 18.72 7.91 87.23 0.69 19.41 16 9 O -0.55 -22.14 16.80 -3.30 -0.06 -22.19 16 10 N -0.58 -22.63 3.33 -813.54 -2.71 -25.34 16 11 C 0.10 3.61 6.05 86.86 0.53 4.13 16 12 C -0.11 -4.31 6.23 31.99 0.20 -4.12 16 13 C 0.23 10.86 0.85 -10.35 -0.01 10.85 16 14 O -0.59 -28.56 13.08 -148.98 -1.95 -30.51 16 15 C -0.56 -28.00 8.13 25.60 0.21 -27.79 16 16 H 0.07 3.34 7.78 -2.91 -0.02 3.32 16 17 C 0.03 1.45 5.28 84.65 0.45 1.89 16 18 N -0.91 -47.40 10.96 21.45 0.24 -47.16 16 19 Si 0.96 40.60 29.54 68.60 2.03 42.63 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 C 0.12 5.46 5.23 86.73 0.45 5.91 16 24 N -0.39 -8.79 4.04 -366.12 -1.48 -10.27 16 25 C 0.09 1.12 11.30 127.77 1.44 2.56 16 26 N -0.31 -7.73 12.56 -47.49 -0.60 -8.32 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.17 4.67 5.83 -2.91 -0.02 4.65 16 31 H 0.43 8.96 7.46 -92.71 -0.69 8.27 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.11 3.35 6.15 -2.39 -0.01 3.34 16 34 H 0.09 3.11 8.04 -2.39 -0.02 3.09 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.38 18.97 7.45 -74.06 -0.55 18.42 16 37 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 38 H 0.05 2.57 7.82 -2.38 -0.02 2.55 16 39 H 0.05 2.45 7.92 -2.39 -0.02 2.43 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.10 0.94 7.52 -2.39 -0.02 0.93 16 Total: -1.00 -62.81 352.90 0.52 -62.29 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.16 Total: 38.52 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 6.91 Total: 32.43 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -6.22 Total: -108.00 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -2.04 Total: -67.87 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -62.81 0.52 -62.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349152674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.346 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds