Wall clock time and date at job start Fri Apr 10 2020 18:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48505 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47166 * 299.99767 * 3 2 1 6 6 H 1.48499 * 109.47414 * 59.99730 * 3 2 1 7 7 C 1.38948 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00221 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99785 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99801 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47096 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00179 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.90710 * 336.25442 * 14 13 12 16 16 C 1.53779 * 113.61379 * 107.50646 * 14 13 12 17 17 C 1.53779 * 87.08402 * 139.98305 * 16 14 13 18 18 H 1.08997 * 113.61646 * 220.02209 * 17 16 14 19 19 N 1.46497 * 113.69123 * 89.12592 * 17 16 14 20 20 C 1.34780 * 119.99769 * 107.46801 * 19 17 16 21 21 O 1.21276 * 120.00249 * 0.02562 * 20 19 17 22 22 C 1.50700 * 119.99706 * 179.97438 * 20 19 17 23 23 C 1.50705 * 109.47177 * 180.02562 * 22 20 19 24 24 C 1.41370 * 128.01104 * 89.99298 * 23 22 20 25 25 N 1.30168 * 106.39850 * 179.97438 * 24 23 22 26 26 O 1.20927 * 111.60644 * 0.02562 * 25 24 23 27 27 C 1.34041 * 111.55944 * 359.75884 * 26 25 24 28 28 C 1.53784 * 113.61464 * 205.00274 * 14 13 12 29 29 H 0.97004 * 119.99999 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99441 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47269 * 59.99697 * 12 10 9 32 32 H 1.08997 * 109.47149 * 299.99571 * 12 10 9 33 33 H 1.00904 * 111.00187 * 303.95704 * 13 12 10 34 34 H 1.09006 * 113.61307 * 25.43507 * 16 14 13 35 35 H 1.08999 * 113.69146 * 254.53993 * 16 14 13 36 36 H 0.96998 * 120.00318 * 287.46338 * 19 17 16 37 37 H 1.09007 * 109.46906 * 299.99605 * 22 20 19 38 38 H 1.08999 * 109.47655 * 59.99995 * 22 20 19 39 39 H 1.08005 * 126.80130 * 359.97438 * 24 23 22 40 40 H 1.08003 * 126.77301 * 180.28336 * 27 26 25 41 41 H 1.09004 * 113.61451 * 105.47386 * 28 14 13 42 42 H 1.08994 * 113.61477 * 334.56688 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2708 0.0039 15 1 0.4880 -7.2054 0.4085 16 6 1.5765 -8.0154 -1.3394 17 6 1.7623 -9.3057 -0.5237 18 1 2.4953 -9.9903 -0.9505 19 7 0.5029 -9.9669 -0.1731 20 6 0.1490 -11.1123 -0.7891 21 8 0.8732 -11.5958 -1.6332 22 6 -1.1463 -11.7928 -0.4280 23 6 -1.3036 -13.0438 -1.2535 24 6 -0.8672 -14.3522 -0.9432 25 7 -1.2211 -15.1047 -1.9446 26 8 -1.7934 -14.4687 -2.7992 27 6 -1.9003 -13.1758 -2.4623 28 6 2.3271 -8.4207 0.6000 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6173 -4.9212 -0.8880 32 1 0.6168 -4.9201 0.8920 33 1 2.8332 -5.9129 -0.7787 34 1 2.4478 -7.7473 -1.9369 35 1 0.6479 -7.9892 -1.9095 36 1 -0.0761 -9.5805 0.5023 37 1 -1.1363 -12.0550 0.6300 38 1 -1.9790 -11.1184 -0.6274 39 1 -0.3439 -14.6653 -0.0518 40 1 -2.3686 -12.3934 -3.0411 41 1 2.0037 -8.7211 1.5966 42 1 3.4035 -8.2634 0.5326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490923703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:39 Heat of formation + Delta-G solvation = 15.592555 kcal Electronic energy + Delta-G solvation = -25441.769386 eV Core-core repulsion = 21426.103504 eV Total energy + Delta-G solvation = -4015.665882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.28398 -40.55540 -38.91470 -38.02134 -35.01686 -34.62860 -33.87458 -32.72519 -32.29880 -31.22214 -29.28632 -26.85755 -25.85094 -24.52189 -23.48011 -23.05903 -22.31400 -20.91173 -19.82318 -19.15802 -18.29728 -18.01073 -17.90639 -17.34644 -16.38738 -16.15600 -15.74194 -15.51865 -15.24459 -14.76630 -14.58575 -14.35967 -14.07058 -13.83852 -13.73070 -13.47698 -13.13453 -12.88406 -12.69753 -12.50491 -12.19519 -11.86885 -11.63017 -11.62095 -11.46493 -11.10641 -10.89192 -10.76048 -10.53241 -10.36425 -10.31080 -10.24729 -9.77208 -9.55019 -9.36234 -8.48794 -8.06525 -7.98499 -6.44877 -3.85644 1.12861 1.83429 2.23931 2.77561 2.95053 3.14245 3.25106 3.32397 3.87356 3.87473 4.06585 4.24246 4.25591 4.28367 4.37245 4.45429 4.55176 4.70600 4.76711 4.87941 4.89801 5.12852 5.17800 5.23712 5.25817 5.40766 5.58978 5.59857 5.66330 5.70429 5.74363 5.80578 5.91886 5.96681 6.20975 6.32809 7.11932 7.20899 7.52649 7.60941 7.85648 7.88253 8.03581 8.57989 9.15062 9.51108 10.02396 10.72910 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.001685 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.705964 B =16610.485569 C =17071.278476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.068 3.932 15 H 0.094 0.906 16 C -0.180 4.180 17 C 0.118 3.882 18 H 0.103 0.897 19 N -0.711 5.711 20 C 0.514 3.486 21 O -0.531 6.531 22 C -0.064 4.064 23 C -0.188 4.188 24 C 0.004 3.996 25 N -0.366 5.366 26 O 0.097 5.903 27 C -0.042 4.042 28 C -0.132 4.132 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.353 0.647 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.188 0.812 40 H 0.216 0.784 41 H 0.073 0.927 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 -23.770 -0.054 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.288 5.288 14 C -0.043 4.043 15 H 0.112 0.888 16 C -0.221 4.221 17 C 0.013 3.987 18 H 0.121 0.879 19 N -0.362 5.362 20 C 0.300 3.700 21 O -0.406 6.406 22 C -0.104 4.104 23 C -0.192 4.192 24 C -0.175 4.175 25 N -0.070 5.070 26 O 0.033 5.967 27 C -0.124 4.124 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.174 0.826 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.205 0.795 40 H 0.232 0.768 41 H 0.092 0.908 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.621 -25.236 -0.281 26.092 hybrid contribution -0.857 1.997 -0.132 2.177 sum -7.478 -23.239 -0.413 24.416 Atomic orbital electron populations 1.69616 1.05952 1.28072 1.50695 1.25263 0.95642 0.99749 0.97304 0.85797 0.79732 0.81090 0.77709 1.19199 1.20771 1.20725 1.19766 0.93427 0.82231 1.47470 0.87846 1.41875 1.09187 1.04638 1.64350 1.19835 0.88410 0.84757 0.84509 1.90527 1.13772 1.87070 1.55383 1.21712 0.94434 0.91053 1.01039 1.60004 1.18260 0.99495 1.51075 1.23097 0.97277 0.88982 0.94935 0.88836 1.24196 1.03014 0.96749 0.98115 1.21773 0.86107 0.93397 0.97465 0.87906 1.45687 1.23069 1.24990 1.42501 1.20520 0.87599 0.80466 0.81407 1.90747 1.53379 1.64431 1.32084 1.19894 0.96686 0.93090 1.00766 1.20702 1.05179 0.95776 0.97557 1.24911 1.02405 0.90156 1.00010 1.73871 1.12009 1.21104 0.99992 1.84824 1.56213 1.17908 1.37771 1.25797 1.02396 0.87489 0.96712 1.23469 1.01856 0.94152 0.97642 0.91918 0.77488 0.93860 0.89674 0.82640 0.88810 0.91271 0.76324 0.87164 0.87198 0.79452 0.76793 0.90841 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 10 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 11 O -0.58 -15.61 15.78 5.55 0.09 -15.53 16 12 C 0.05 0.83 6.01 -4.98 -0.03 0.80 16 13 N -0.66 -9.80 6.24 -107.13 -0.67 -10.47 16 14 C 0.07 0.71 4.06 -66.90 -0.27 0.44 16 15 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 16 C -0.18 -1.74 7.50 -25.92 -0.19 -1.94 16 17 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 18 H 0.10 1.07 7.46 -51.93 -0.39 0.69 16 19 N -0.71 -4.79 5.27 -53.02 -0.28 -5.07 16 20 C 0.51 4.18 7.82 -10.98 -0.09 4.10 16 21 O -0.53 -6.85 15.63 5.56 0.09 -6.76 16 22 C -0.06 -0.29 6.28 -29.03 -0.18 -0.47 16 23 C -0.19 -1.33 4.82 -104.42 -0.50 -1.83 16 24 C 0.00 0.04 12.16 -17.07 -0.21 -0.17 16 25 N -0.37 -3.82 12.07 30.35 0.37 -3.45 16 26 O 0.10 0.89 11.20 17.17 0.19 1.09 16 27 C -0.04 -0.28 12.26 29.74 0.36 0.09 16 28 C -0.13 -1.20 7.63 -25.91 -0.20 -1.40 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 33 H 0.35 5.54 7.90 -39.29 -0.31 5.23 16 34 H 0.09 0.95 7.82 -51.93 -0.41 0.55 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 1.64 8.70 -40.82 -0.36 1.28 16 37 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.19 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.22 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -35.77 367.49 -6.46 -42.24 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.51 Total: 11.70 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.92 Total: 2.49 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.08 Total: -56.56 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.37 Total: -21.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.77 -6.46 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490923703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.829 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds