Wall clock time and date at job start Fri Apr 10 2020 18:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29940 * 125.37839 * 2 1 4 4 C 1.36066 * 108.47926 * 180.11671 * 3 2 1 5 5 C 1.47417 * 126.44969 * 179.85668 * 4 3 2 6 6 O 1.21607 * 120.00345 * 179.68899 * 5 4 3 7 7 N 1.34781 * 120.00035 * 359.68904 * 5 4 3 8 8 C 1.46500 * 119.99985 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.85221 * 334.67013 * 8 7 5 10 10 C 1.53785 * 113.68813 * 105.94035 * 8 7 5 11 11 C 1.53779 * 87.08093 * 139.99098 * 10 8 7 12 12 H 1.09003 * 113.61186 * 89.11185 * 11 10 8 13 13 N 1.46900 * 113.69049 * 220.00567 * 11 10 8 14 14 C 1.46895 * 111.00037 * 252.53571 * 13 11 10 15 15 C 1.50701 * 109.47160 * 179.97438 * 14 13 11 16 16 O 1.21287 * 119.99828 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00055 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99982 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99773 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99916 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47134 * 60.00383 * 22 20 18 24 24 H 1.48497 * 109.47280 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47161 * 300.00303 * 22 20 18 26 26 C 1.53781 * 113.61339 * 203.47543 * 8 7 5 27 27 C 1.36090 * 107.10176 * 359.59617 * 4 3 2 28 28 O 1.34049 * 125.38161 * 179.65997 * 2 1 3 29 29 H 1.09001 * 109.47035 * 180.31254 * 1 2 3 30 30 H 1.08998 * 109.47284 * 300.31174 * 1 2 3 31 31 H 1.08994 * 109.47409 * 60.31368 * 1 2 3 32 32 H 0.96998 * 119.99866 * 0.02562 * 7 5 4 33 33 H 1.09003 * 113.60734 * 254.54218 * 10 8 7 34 34 H 1.08996 * 113.61146 * 25.43716 * 10 8 7 35 35 H 1.00905 * 110.99680 * 16.49118 * 13 11 10 36 36 H 1.08999 * 109.47315 * 300.00403 * 14 13 11 37 37 H 1.09002 * 109.47268 * 59.99916 * 14 13 11 38 38 H 0.97005 * 120.00061 * 0.02562 * 17 15 14 39 39 H 0.96997 * 120.00124 * 179.97438 * 21 20 18 40 40 H 1.09005 * 113.61302 * 334.48230 * 26 8 7 41 41 H 1.08993 * 113.62030 * 105.39076 * 26 8 7 42 42 H 1.07997 * 126.52790 * 180.20107 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0026 5 6 4.7439 1.5439 -0.0065 6 8 5.8604 1.0621 -0.0029 7 7 4.5878 2.8826 -0.0141 8 6 5.7631 3.7572 -0.0174 9 1 6.6441 3.2838 0.4161 10 6 6.0297 4.4288 -1.3749 11 6 6.3901 5.6992 -0.5869 12 1 7.4426 5.7567 -0.3091 13 7 5.8944 6.9369 -1.2036 14 6 6.9953 7.7060 -1.7989 15 6 6.4493 8.9654 -2.4209 16 8 5.2602 9.1994 -2.3726 17 7 7.2825 9.8322 -3.0299 18 6 6.7858 10.9777 -3.5963 19 1 5.7268 11.1856 -3.5540 20 6 7.6449 11.8715 -4.2237 21 7 8.9335 11.6187 -4.2747 22 14 6.9682 13.4326 -4.9947 23 1 6.2993 14.2504 -3.9512 24 1 8.0811 14.2105 -5.5960 25 1 5.9860 13.0777 -6.0505 26 6 5.4851 5.1648 0.5358 27 6 3.5660 -0.6969 0.0049 28 8 2.2831 -1.0929 0.0065 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5187 0.8872 31 1 -0.3634 0.5089 -0.8927 32 1 3.6972 3.2670 -0.0166 33 1 6.8712 3.9979 -1.9174 34 1 5.1374 4.5359 -1.9917 35 1 5.1801 6.7388 -1.8882 36 1 7.7171 7.9660 -1.0246 37 1 7.4852 7.1055 -2.5654 38 1 8.2336 9.6452 -3.0682 39 1 9.5331 12.2425 -4.7130 40 1 4.4439 5.4733 0.4413 41 1 5.8869 5.3284 1.5356 42 1 4.4361 -1.3367 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491010591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:43 Heat of formation + Delta-G solvation = -27.709621 kcal Electronic energy + Delta-G solvation = -25410.272081 eV Core-core repulsion = 21392.728476 eV Total energy + Delta-G solvation = -4017.543605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.87107 -40.26958 -38.75978 -37.93343 -35.37442 -34.59654 -33.83015 -32.79270 -32.29105 -31.17236 -28.37057 -26.92792 -25.77300 -25.23059 -24.04956 -22.59642 -21.77548 -20.79677 -20.14433 -19.16468 -18.39624 -17.85388 -17.36834 -16.87325 -16.70075 -15.92601 -15.46200 -15.20335 -14.98084 -14.68394 -14.47474 -14.37601 -14.12420 -13.95853 -13.67390 -13.31960 -13.21397 -13.07812 -12.87570 -12.54597 -12.13410 -11.71016 -11.62337 -11.54389 -11.29900 -11.26139 -11.03760 -10.98092 -10.82518 -10.43278 -10.39058 -10.19753 -9.49544 -9.48784 -9.19814 -8.43416 -8.00877 -7.93690 -6.40241 -3.81134 0.68403 1.56120 2.11694 2.80969 2.96346 3.21219 3.26770 3.31246 3.42295 3.92534 4.12041 4.31571 4.32385 4.32917 4.52626 4.58749 4.76524 4.79147 4.84669 4.88788 4.98950 5.17363 5.20036 5.25298 5.28832 5.42488 5.63726 5.65476 5.67798 5.80630 5.84448 5.93121 5.96863 6.03649 6.27590 6.37744 6.96033 7.25658 7.31095 7.56295 7.66985 7.87226 8.07568 8.62768 9.19117 9.55809 10.07327 10.77391 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.001773 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.903286 B =15784.374019 C =16430.578563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.198 3.802 3 N -0.462 5.462 4 C -0.072 4.072 5 C 0.603 3.397 6 O -0.539 6.539 7 N -0.697 5.697 8 C 0.120 3.880 9 H 0.116 0.884 10 C -0.181 4.181 11 C 0.072 3.928 12 H 0.101 0.899 13 N -0.655 5.655 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.132 4.132 27 C 0.012 3.988 28 O -0.197 6.197 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.352 0.648 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 -25.714 9.596 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.193 5.193 4 C -0.192 4.192 5 C 0.388 3.612 6 O -0.416 6.416 7 N -0.347 5.347 8 C 0.015 3.985 9 H 0.134 0.866 10 C -0.221 4.221 11 C -0.040 4.040 12 H 0.119 0.881 13 N -0.286 5.286 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.469 6.469 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.171 4.171 27 C -0.062 4.062 28 O -0.083 6.083 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.794 -24.769 10.123 28.853 hybrid contribution 0.512 -0.354 -1.272 1.416 sum -10.282 -25.123 8.851 28.553 Atomic orbital electron populations 1.20337 0.80718 1.05047 1.05540 1.26387 0.96732 0.78223 0.99751 1.70759 1.00673 1.29997 1.17901 1.21826 0.92181 0.93103 1.12048 1.16779 0.86103 0.82141 0.76185 1.90826 1.24290 1.75461 1.51036 1.45801 1.10664 1.05074 1.73156 1.22510 0.89181 0.89106 0.97692 0.86577 1.24246 1.02501 0.98072 0.97316 1.22810 0.98719 0.87112 0.95367 0.88138 1.60011 1.12128 1.18303 1.38133 1.21727 0.93803 0.94599 0.98198 1.19835 0.87387 0.86042 0.84182 1.90518 1.15877 1.77356 1.63117 1.41863 1.09569 1.19315 1.49269 1.19657 0.95286 0.96590 1.31428 0.87983 1.25265 0.95092 0.99751 0.97851 1.69605 1.02483 1.37947 1.44284 0.85910 0.78060 0.80901 0.79293 1.19886 1.20991 1.19942 1.23471 1.01916 0.92410 0.99283 1.25296 0.84841 0.95701 1.00389 1.84409 1.16743 1.37976 1.69214 0.89116 0.88130 0.88102 0.75323 0.90916 0.89363 0.82776 0.89515 0.93734 0.77439 0.91830 0.88865 0.90454 0.75264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.20 1.48 8.30 -13.08 -0.11 1.37 16 3 N -0.46 -4.55 11.06 -7.66 -0.08 -4.63 16 4 C -0.07 -0.74 6.99 -83.02 -0.58 -1.32 16 5 C 0.60 7.16 7.81 -12.52 -0.10 7.06 16 6 O -0.54 -7.67 16.51 5.27 0.09 -7.59 16 7 N -0.70 -7.35 5.36 -54.09 -0.29 -7.64 16 8 C 0.12 1.26 4.22 -67.12 -0.28 0.98 16 9 H 0.12 1.27 7.50 -51.93 -0.39 0.88 16 10 C -0.18 -2.01 7.50 -25.92 -0.19 -2.20 16 11 C 0.07 0.86 4.18 -66.90 -0.28 0.58 16 12 H 0.10 1.12 7.87 -51.93 -0.41 0.72 16 13 N -0.65 -10.43 6.24 -107.13 -0.67 -11.10 16 14 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 15 C 0.44 10.46 7.82 -10.98 -0.09 10.38 16 16 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 17 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 18 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 22 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.13 -1.39 7.63 -25.92 -0.20 -1.58 16 27 C 0.01 0.09 11.95 29.96 0.36 0.45 16 28 O -0.20 -1.53 10.73 6.50 0.07 -1.46 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.41 3.96 8.44 -40.82 -0.34 3.61 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.01 7.83 -51.93 -0.41 0.61 16 35 H 0.35 5.82 7.90 -39.29 -0.31 5.51 16 36 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.23 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -34.79 369.04 -6.45 -41.24 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -5.50 Total: 15.08 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.36 Total: 8.67 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.38 Total: -61.77 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: 0.24 Total: -24.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.79 -6.45 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491010591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.530 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds