Wall clock time and date at job start Fri Apr 10 2020 18:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29940 * 125.37839 * 2 1 4 4 C 1.36066 * 108.47926 * 180.11671 * 3 2 1 5 5 C 1.47417 * 126.44969 * 179.85668 * 4 3 2 6 6 O 1.21607 * 120.00345 * 179.68899 * 5 4 3 7 7 N 1.34781 * 120.00035 * 359.68904 * 5 4 3 8 8 C 1.46500 * 119.99985 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.85221 * 334.67013 * 8 7 5 10 10 C 1.53785 * 113.68813 * 105.94035 * 8 7 5 11 11 C 1.53779 * 87.08093 * 139.99098 * 10 8 7 12 12 H 1.09003 * 113.61186 * 89.11185 * 11 10 8 13 13 N 1.46900 * 113.69049 * 220.00567 * 11 10 8 14 14 C 1.46895 * 111.00037 * 252.53571 * 13 11 10 15 15 C 1.50701 * 109.47160 * 179.97438 * 14 13 11 16 16 O 1.21287 * 119.99828 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00055 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99982 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99773 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99916 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47134 * 60.00383 * 22 20 18 24 24 H 1.48497 * 109.47280 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47161 * 300.00303 * 22 20 18 26 26 C 1.53781 * 113.61339 * 203.47543 * 8 7 5 27 27 C 1.36090 * 107.10176 * 359.59617 * 4 3 2 28 28 O 1.34049 * 125.38161 * 179.65997 * 2 1 3 29 29 H 1.09001 * 109.47035 * 180.31254 * 1 2 3 30 30 H 1.08998 * 109.47284 * 300.31174 * 1 2 3 31 31 H 1.08994 * 109.47409 * 60.31368 * 1 2 3 32 32 H 0.96998 * 119.99866 * 0.02562 * 7 5 4 33 33 H 1.09003 * 113.60734 * 254.54218 * 10 8 7 34 34 H 1.08996 * 113.61146 * 25.43716 * 10 8 7 35 35 H 1.00905 * 110.99680 * 16.49118 * 13 11 10 36 36 H 1.08999 * 109.47315 * 300.00403 * 14 13 11 37 37 H 1.09002 * 109.47268 * 59.99916 * 14 13 11 38 38 H 0.97005 * 120.00061 * 0.02562 * 17 15 14 39 39 H 0.96997 * 120.00124 * 179.97438 * 21 20 18 40 40 H 1.09005 * 113.61302 * 334.48230 * 26 8 7 41 41 H 1.08993 * 113.62030 * 105.39076 * 26 8 7 42 42 H 1.07997 * 126.52790 * 180.20107 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0026 5 6 4.7439 1.5439 -0.0065 6 8 5.8604 1.0621 -0.0029 7 7 4.5878 2.8826 -0.0141 8 6 5.7631 3.7572 -0.0174 9 1 6.6441 3.2838 0.4161 10 6 6.0297 4.4288 -1.3749 11 6 6.3901 5.6992 -0.5869 12 1 7.4426 5.7567 -0.3091 13 7 5.8944 6.9369 -1.2036 14 6 6.9953 7.7060 -1.7989 15 6 6.4493 8.9654 -2.4209 16 8 5.2602 9.1994 -2.3726 17 7 7.2825 9.8322 -3.0299 18 6 6.7858 10.9777 -3.5963 19 1 5.7268 11.1856 -3.5540 20 6 7.6449 11.8715 -4.2237 21 7 8.9335 11.6187 -4.2747 22 14 6.9682 13.4326 -4.9947 23 1 6.2993 14.2504 -3.9512 24 1 8.0811 14.2105 -5.5960 25 1 5.9860 13.0777 -6.0505 26 6 5.4851 5.1648 0.5358 27 6 3.5660 -0.6969 0.0049 28 8 2.2831 -1.0929 0.0065 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5187 0.8872 31 1 -0.3634 0.5089 -0.8927 32 1 3.6972 3.2670 -0.0166 33 1 6.8712 3.9979 -1.9174 34 1 5.1374 4.5359 -1.9917 35 1 5.1801 6.7388 -1.8882 36 1 7.7171 7.9660 -1.0246 37 1 7.4852 7.1055 -2.5654 38 1 8.2336 9.6452 -3.0682 39 1 9.5331 12.2425 -4.7130 40 1 4.4439 5.4733 0.4413 41 1 5.8869 5.3284 1.5356 42 1 4.4361 -1.3367 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491010591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:42 Heat of formation + Delta-G solvation = -57.820679 kcal Electronic energy + Delta-G solvation = -25411.577795 eV Core-core repulsion = 21392.728476 eV Total energy + Delta-G solvation = -4018.849319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.48221 -41.19964 -40.17791 -39.37249 -36.15031 -36.02124 -35.43294 -33.68108 -33.22867 -32.99815 -28.89954 -28.43561 -26.66668 -26.45302 -25.49725 -23.48433 -22.42712 -21.66073 -21.29801 -20.74562 -19.89211 -19.14581 -17.98107 -17.92223 -17.52007 -17.28621 -16.90898 -16.36717 -16.21045 -15.96089 -15.76206 -15.65095 -14.99211 -14.89760 -14.74588 -14.37231 -14.31027 -13.91790 -13.54414 -13.47302 -13.45163 -13.29262 -13.13816 -12.83342 -12.43544 -12.37067 -12.23658 -12.13967 -11.99325 -11.90721 -11.80302 -11.49951 -11.30887 -10.33636 -10.24556 -10.01568 -9.96656 -9.25019 -8.46231 -5.95202 0.02132 0.90509 1.40192 1.41960 1.53036 1.56938 2.01920 2.05642 2.14279 2.29826 2.84290 2.98269 3.20902 3.42276 3.58402 3.65199 3.76446 3.77061 3.90381 3.98785 4.33458 4.39180 4.46174 4.51309 4.53445 4.63110 4.67235 4.73221 4.76301 4.77509 4.83601 4.97102 5.04666 5.07568 5.22526 5.40808 5.46808 5.92650 6.14122 6.25571 6.39546 6.54276 6.60413 7.00717 7.12590 7.56462 8.11696 8.70815 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.001773 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.903286 B =15784.374019 C =16430.578563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.202 3.798 3 N -0.490 5.490 4 C -0.103 4.103 5 C 0.601 3.399 6 O -0.569 6.569 7 N -0.692 5.692 8 C 0.126 3.874 9 H 0.115 0.885 10 C -0.175 4.175 11 C 0.070 3.930 12 H 0.115 0.885 13 N -0.667 5.667 14 C 0.064 3.936 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.123 4.123 27 C 0.024 3.976 28 O -0.197 6.197 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.415 0.585 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.346 0.654 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 -26.656 9.898 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 N -0.221 5.221 4 C -0.222 4.222 5 C 0.387 3.613 6 O -0.449 6.449 7 N -0.341 5.341 8 C 0.021 3.979 9 H 0.133 0.867 10 C -0.216 4.216 11 C -0.041 4.041 12 H 0.133 0.867 13 N -0.298 5.298 14 C -0.069 4.069 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.161 4.161 27 C -0.050 4.050 28 O -0.083 6.083 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.165 0.835 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.133 -25.716 10.438 29.903 hybrid contribution 0.553 -0.139 -1.337 1.453 sum -10.580 -25.855 9.101 29.381 Atomic orbital electron populations 1.20615 0.77724 1.06814 1.06444 1.27292 0.98112 0.77584 0.97772 1.70731 1.00683 1.31202 1.19477 1.21759 0.92120 0.93829 1.14494 1.17004 0.86253 0.82476 0.75527 1.90797 1.25444 1.75961 1.52680 1.45775 1.10876 1.04888 1.72601 1.22409 0.89184 0.89046 0.97223 0.86705 1.24173 1.02316 0.97593 0.97486 1.22945 0.99752 0.85650 0.95744 0.86691 1.60038 1.11722 1.20230 1.37836 1.21603 0.94315 0.91933 0.99011 1.20925 0.86757 0.87157 0.82766 1.90485 1.17764 1.78585 1.64263 1.41938 1.09946 1.19313 1.49823 1.19640 0.94674 0.98551 1.33645 0.90311 1.26055 0.95336 1.02301 0.97637 1.69667 1.03178 1.38924 1.44296 0.84978 0.77792 0.77145 0.78354 1.19721 1.19478 1.19693 1.23397 1.01465 0.91909 0.99378 1.25754 0.85597 0.95287 0.98348 1.84448 1.16630 1.38097 1.69124 0.86941 0.86988 0.87192 0.74845 0.90792 0.89861 0.83474 0.87532 0.91570 0.76945 0.91293 0.89230 0.89291 0.72975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 71.23 0.75 0.52 16 2 C 0.20 2.75 8.30 88.39 0.73 3.48 16 3 N -0.49 -9.35 11.06 -293.04 -3.24 -12.59 16 4 C -0.10 -2.11 6.99 40.41 0.28 -1.82 16 5 C 0.60 14.20 7.81 86.66 0.68 14.88 16 6 O -0.57 -16.16 16.51 -4.05 -0.07 -16.22 16 7 N -0.69 -14.36 5.36 -443.29 -2.38 -16.73 16 8 C 0.13 2.54 4.22 45.52 0.19 2.73 16 9 H 0.12 2.40 7.50 -2.39 -0.02 2.39 16 10 C -0.18 -3.72 7.50 31.12 0.23 -3.49 16 11 C 0.07 1.57 4.18 45.44 0.19 1.76 16 12 H 0.12 2.29 7.87 -2.39 -0.02 2.27 16 13 N -0.67 -20.64 6.24 -492.85 -3.08 -23.72 16 14 C 0.06 2.17 6.01 85.56 0.51 2.68 16 15 C 0.44 20.90 7.82 87.66 0.69 21.58 16 16 O -0.62 -34.86 15.78 -3.05 -0.05 -34.91 16 17 N -0.57 -29.64 5.29 -306.99 -1.62 -31.26 16 18 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 22 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C -0.12 -2.41 7.63 31.12 0.24 -2.18 16 27 C 0.02 0.37 11.95 67.32 0.80 1.17 16 28 O -0.20 -2.75 10.73 0.36 0.00 -2.75 16 29 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.41 7.92 8.44 -92.71 -0.78 7.14 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.87 7.83 -2.39 -0.02 1.85 16 35 H 0.35 11.37 7.90 -89.69 -0.71 10.66 16 36 H 0.11 3.24 8.13 -2.39 -0.02 3.22 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.40 19.44 7.90 -92.70 -0.73 18.71 16 39 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.09 1.86 8.11 -2.38 -0.02 1.84 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.25 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -75.60 369.04 -2.67 -78.27 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -1.13 Total: 41.69 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 6.58 Total: 22.66 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -10.03 Total: -133.93 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.11 Total: -53.88 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.60 -2.67 -78.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491010591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.451 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds