Wall clock time and date at job start Fri Apr 10 2020 18:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33747 * 2 1 4 4 O 1.20662 * 112.30264 * 180.30234 * 3 2 1 5 5 C 1.33498 * 113.15141 * 359.71904 * 4 3 2 6 6 C 1.50699 * 126.82479 * 180.02562 * 5 4 3 7 7 C 1.37354 * 106.34626 * 0.02562 * 5 4 3 8 8 C 1.47397 * 128.57009 * 179.97438 * 7 5 4 9 9 O 1.21612 * 120.00328 * 89.99122 * 8 7 5 10 10 N 1.34777 * 119.99933 * 269.99936 * 8 7 5 11 11 C 1.46502 * 119.99942 * 179.97438 * 10 8 7 12 12 C 1.53513 * 114.16704 * 204.99849 * 11 10 8 13 13 N 1.47484 * 87.93060 * 220.32609 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 60.00161 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46865 * 300.00343 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.08995 * 109.47003 * 270.14321 * 1 2 3 28 28 H 1.08998 * 109.46641 * 30.13835 * 1 2 3 29 29 H 1.09000 * 109.47452 * 150.13827 * 1 2 3 30 30 H 1.09003 * 109.47823 * 269.97581 * 6 5 4 31 31 H 1.08999 * 109.47323 * 29.97946 * 6 5 4 32 32 H 1.09006 * 109.46888 * 149.97432 * 6 5 4 33 33 H 0.96992 * 120.00120 * 359.97438 * 10 8 7 34 34 H 1.09003 * 113.37948 * 338.07305 * 11 10 8 35 35 H 1.09005 * 113.47855 * 105.56484 * 12 11 10 36 36 H 1.08997 * 113.53455 * 335.10065 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6493 -0.6009 -0.0049 6 6 4.9711 -1.3248 -0.0105 7 6 2.3991 -1.1697 0.0022 8 6 2.0399 -2.5992 0.0056 9 8 1.8973 -3.1879 1.0602 10 7 1.8696 -3.2540 -1.1600 11 6 1.5131 -4.6750 -1.1567 12 6 1.9273 -5.4299 -2.4275 13 7 0.6365 -6.1404 -2.3619 14 6 0.0405 -6.2735 -3.6979 15 6 -1.1404 -7.2075 -3.6303 16 8 -1.4547 -7.7121 -2.5730 17 7 -1.8507 -7.4773 -4.7434 18 6 -2.9252 -8.3265 -4.6818 19 1 -3.2022 -8.7796 -3.7414 20 6 -3.6579 -8.6044 -5.8292 21 7 -3.3212 -8.0526 -6.9734 22 14 -5.1216 -9.7620 -5.7455 23 1 -6.1289 -9.2185 -4.7994 24 1 -5.7282 -9.8915 -7.0947 25 1 -4.6707 -11.0966 -5.2758 26 6 0.0906 -4.9673 -1.6541 27 1 -0.3633 0.0026 1.0276 28 1 -0.3632 0.8888 -0.5160 29 1 -0.3634 -0.8912 -0.5117 30 1 5.2845 -1.5013 -1.0394 31 1 5.7199 -0.7178 0.4984 32 1 4.8649 -2.2790 0.5057 33 1 1.9830 -2.7845 -2.0011 34 1 1.7752 -5.1845 -0.2294 35 1 2.7893 -6.0815 -2.2841 36 1 2.0254 -4.7877 -3.3027 37 1 0.7822 -6.6751 -4.3884 38 1 -0.2895 -5.2954 -4.0478 39 1 -1.6022 -7.0701 -5.5880 40 1 -3.8324 -8.2468 -7.7746 41 1 -0.3019 -4.2008 -2.3223 42 1 -0.6041 -5.2268 -0.8552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494335327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:47 Heat of formation + Delta-G solvation = 30.263491 kcal Electronic energy + Delta-G solvation = -26259.864988 eV Core-core repulsion = 22244.835286 eV Total energy + Delta-G solvation = -4015.029703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.23942 -40.72360 -39.19936 -37.73294 -34.94234 -34.32953 -33.97174 -33.78092 -31.28338 -30.01034 -29.13885 -28.42640 -26.01327 -25.91687 -24.75760 -23.32591 -21.24543 -20.58258 -20.15131 -19.28573 -18.28136 -18.09557 -17.91681 -16.81987 -16.60837 -16.15088 -15.41610 -15.29701 -14.92379 -14.70430 -14.41934 -14.05437 -13.91752 -13.85039 -13.58925 -13.57701 -13.27784 -13.14188 -12.97230 -12.82974 -12.69212 -12.33450 -11.67929 -11.59166 -11.47376 -11.28036 -11.07046 -10.73172 -10.56622 -10.44679 -10.25592 -10.21795 -9.78186 -9.50021 -9.33970 -8.91549 -8.25004 -7.97207 -6.42580 -3.83314 0.90391 1.53824 2.03766 2.40943 2.88010 3.19713 3.25234 3.29903 3.71436 3.84642 3.88257 3.97655 4.18091 4.30107 4.42402 4.51331 4.72036 4.79833 4.86584 4.91835 4.98990 5.10933 5.12657 5.17152 5.25175 5.26254 5.28878 5.42944 5.51610 5.59110 5.62041 5.66657 5.76283 5.97508 6.14014 6.23811 6.43802 7.01740 7.11273 7.54378 7.79167 7.84775 8.04859 8.61059 9.17643 9.53259 10.05731 10.75242 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002148 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.576506 B =13031.356608 C =13418.983021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.356 5.356 4 O 0.096 5.904 5 C 0.021 3.979 6 C -0.081 4.081 7 C -0.255 4.255 8 C 0.603 3.397 9 O -0.518 6.518 10 N -0.706 5.706 11 C 0.117 3.883 12 C -0.013 4.013 13 N -0.433 5.433 14 C 0.011 3.989 15 C 0.445 3.555 16 O -0.573 6.573 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.009 4.009 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.403 0.597 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.071 0.929 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.292 17.109 7.640 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.062 5.062 4 O 0.035 5.965 5 C -0.043 4.043 6 C -0.138 4.138 7 C -0.263 4.263 8 C 0.387 3.613 9 O -0.393 6.393 10 N -0.357 5.357 11 C 0.012 3.988 12 C -0.143 4.143 13 N -0.155 5.155 14 C -0.121 4.121 15 C 0.230 3.770 16 O -0.456 6.456 17 N -0.204 5.204 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.139 4.139 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.630 16.917 9.197 24.800 hybrid contribution -0.720 -0.049 -1.618 1.772 sum 14.910 16.869 7.578 23.755 Atomic orbital electron populations 1.20260 0.84951 1.04326 1.04197 1.24791 0.98669 0.86377 1.00618 1.73632 0.89094 1.23303 1.20219 1.84547 1.21546 1.22527 1.67892 1.24646 0.97352 0.83819 0.98487 1.20503 0.88996 0.99532 1.04767 1.21919 0.92965 0.95266 1.16104 1.16886 0.76475 0.83831 0.84157 1.90863 1.49542 1.67825 1.31053 1.45960 1.70414 1.11144 1.08223 1.22804 0.95936 0.79593 1.00494 1.24324 0.96731 0.96712 0.96525 1.68807 1.01854 1.30575 1.14270 1.22505 0.98211 0.99765 0.91645 1.19627 0.85688 0.86434 0.85225 1.90539 1.70556 1.55124 1.29420 1.41856 1.27260 1.42223 1.09034 1.19650 1.04807 1.21702 0.96639 0.87989 1.25251 0.99489 0.98489 0.94722 1.69601 1.41183 1.44218 0.99526 0.85918 0.80802 0.80368 0.77152 1.19908 1.20988 1.19867 1.24412 0.97301 0.92311 0.99850 0.89411 0.89764 0.89645 0.88536 0.88960 0.88596 0.76248 0.84957 0.88689 0.91043 0.89193 0.92219 0.77578 0.91850 0.91108 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.49 36.01 0.38 -0.26 16 2 C 0.06 0.58 7.59 -79.76 -0.61 -0.02 16 3 N -0.36 -3.85 12.01 34.78 0.42 -3.43 16 4 O 0.10 0.91 11.06 18.64 0.21 1.12 16 5 C 0.02 0.16 7.55 -34.63 -0.26 -0.10 16 6 C -0.08 -0.34 10.33 36.01 0.37 0.03 16 7 C -0.26 -2.50 6.24 -102.89 -0.64 -3.14 16 8 C 0.60 6.61 7.60 -12.53 -0.10 6.51 16 9 O -0.52 -7.73 16.70 5.27 0.09 -7.65 16 10 N -0.71 -6.24 5.38 -54.62 -0.29 -6.54 16 11 C 0.12 1.28 4.59 -67.72 -0.31 0.96 16 12 C -0.01 -0.14 7.45 -7.55 -0.06 -0.19 16 13 N -0.43 -6.77 5.82 -246.13 -1.43 -8.20 16 14 C 0.01 0.18 5.30 -4.98 -0.03 0.16 16 15 C 0.45 10.48 7.85 -10.98 -0.09 10.39 16 16 O -0.57 -15.81 16.01 5.54 0.09 -15.72 16 17 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 C -0.01 -0.12 7.52 -7.56 -0.06 -0.17 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.40 2.58 8.74 -40.82 -0.36 2.22 16 34 H 0.13 1.66 7.45 -51.93 -0.39 1.27 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 39 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 0.87 7.42 -51.93 -0.39 0.49 16 42 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -35.44 369.25 -6.90 -42.35 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.55 Total: 8.30 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.63 Total: 6.19 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.64 Total: -56.18 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.38 Total: -22.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.44 -6.90 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494335327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.610 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds