Wall clock time and date at job start Fri Apr 10 2020 18:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33747 * 2 1 4 4 O 1.20662 * 112.30264 * 180.30234 * 3 2 1 5 5 C 1.33498 * 113.15141 * 359.71904 * 4 3 2 6 6 C 1.50699 * 126.82479 * 180.02562 * 5 4 3 7 7 C 1.37354 * 106.34626 * 0.02562 * 5 4 3 8 8 C 1.47397 * 128.57009 * 179.97438 * 7 5 4 9 9 O 1.21612 * 120.00328 * 89.99122 * 8 7 5 10 10 N 1.34777 * 119.99933 * 269.99936 * 8 7 5 11 11 C 1.46502 * 119.99942 * 179.97438 * 10 8 7 12 12 C 1.53513 * 114.16704 * 204.99849 * 11 10 8 13 13 N 1.47484 * 87.93060 * 220.32609 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 60.00161 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46865 * 300.00343 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.08995 * 109.47003 * 270.14321 * 1 2 3 28 28 H 1.08998 * 109.46641 * 30.13835 * 1 2 3 29 29 H 1.09000 * 109.47452 * 150.13827 * 1 2 3 30 30 H 1.09003 * 109.47823 * 269.97581 * 6 5 4 31 31 H 1.08999 * 109.47323 * 29.97946 * 6 5 4 32 32 H 1.09006 * 109.46888 * 149.97432 * 6 5 4 33 33 H 0.96992 * 120.00120 * 359.97438 * 10 8 7 34 34 H 1.09003 * 113.37948 * 338.07305 * 11 10 8 35 35 H 1.09005 * 113.47855 * 105.56484 * 12 11 10 36 36 H 1.08997 * 113.53455 * 335.10065 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6493 -0.6009 -0.0049 6 6 4.9711 -1.3248 -0.0105 7 6 2.3991 -1.1697 0.0022 8 6 2.0399 -2.5992 0.0056 9 8 1.8973 -3.1879 1.0602 10 7 1.8696 -3.2540 -1.1600 11 6 1.5131 -4.6750 -1.1567 12 6 1.9273 -5.4299 -2.4275 13 7 0.6365 -6.1404 -2.3619 14 6 0.0405 -6.2735 -3.6979 15 6 -1.1404 -7.2075 -3.6303 16 8 -1.4547 -7.7121 -2.5730 17 7 -1.8507 -7.4773 -4.7434 18 6 -2.9252 -8.3265 -4.6818 19 1 -3.2022 -8.7796 -3.7414 20 6 -3.6579 -8.6044 -5.8292 21 7 -3.3212 -8.0526 -6.9734 22 14 -5.1216 -9.7620 -5.7455 23 1 -6.1289 -9.2185 -4.7994 24 1 -5.7282 -9.8915 -7.0947 25 1 -4.6707 -11.0966 -5.2758 26 6 0.0906 -4.9673 -1.6541 27 1 -0.3633 0.0026 1.0276 28 1 -0.3632 0.8888 -0.5160 29 1 -0.3634 -0.8912 -0.5117 30 1 5.2845 -1.5013 -1.0394 31 1 5.7199 -0.7178 0.4984 32 1 4.8649 -2.2790 0.5057 33 1 1.9830 -2.7845 -2.0011 34 1 1.7752 -5.1845 -0.2294 35 1 2.7893 -6.0815 -2.2841 36 1 2.0254 -4.7877 -3.3027 37 1 0.7822 -6.6751 -4.3884 38 1 -0.2895 -5.2954 -4.0478 39 1 -1.6022 -7.0701 -5.5880 40 1 -3.8324 -8.2468 -7.7746 41 1 -0.3019 -4.2008 -2.3223 42 1 -0.6041 -5.2268 -0.8552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494335327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:46 Heat of formation + Delta-G solvation = 1.103091 kcal Electronic energy + Delta-G solvation = -26261.129478 eV Core-core repulsion = 22244.835286 eV Total energy + Delta-G solvation = -4016.294192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.95875 -41.75080 -40.32790 -39.44680 -35.96534 -35.68288 -35.15580 -34.53014 -33.28167 -31.25606 -29.81496 -29.00371 -27.42446 -26.96495 -26.01508 -24.54598 -22.08407 -21.45028 -21.09735 -20.86661 -19.90636 -19.05317 -18.83457 -17.93801 -17.66305 -17.41437 -16.59688 -16.55339 -16.28296 -15.93057 -15.66792 -15.54849 -14.95024 -14.74386 -14.42664 -14.29477 -14.22178 -13.99847 -13.80591 -13.69024 -13.56522 -13.50277 -13.43181 -13.02609 -12.76092 -12.45550 -12.37420 -12.14047 -12.12517 -11.86593 -11.49472 -11.48584 -10.99098 -10.44816 -10.39361 -10.23443 -10.00757 -9.78345 -8.46701 -5.95061 0.25862 0.80035 1.18402 1.39305 1.41155 1.51738 1.70130 2.06886 2.13964 2.29719 2.86093 3.07352 3.19006 3.20795 3.29462 3.50442 3.69327 3.76512 3.88248 4.08964 4.22293 4.27840 4.28291 4.40109 4.47590 4.52043 4.53989 4.62093 4.62863 4.69641 4.75848 4.79873 4.89060 5.03958 5.10232 5.28163 5.33244 5.40942 5.86767 6.06702 6.33308 6.61593 6.99508 7.13863 7.16247 7.57557 8.14776 8.70457 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002148 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.576506 B =13031.356608 C =13418.983021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.050 3.950 3 N -0.378 5.378 4 O 0.092 5.908 5 C 0.040 3.960 6 C -0.082 4.082 7 C -0.280 4.280 8 C 0.611 3.389 9 O -0.564 6.564 10 N -0.686 5.686 11 C 0.132 3.868 12 C 0.004 3.996 13 N -0.473 5.473 14 C 0.026 3.974 15 C 0.439 3.561 16 O -0.622 6.622 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.075 0.925 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.273 1.273 26 C -0.014 4.014 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.419 0.581 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.088 0.912 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.849 18.071 6.196 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 N -0.086 5.086 4 O 0.033 5.967 5 C -0.024 4.024 6 C -0.139 4.139 7 C -0.287 4.287 8 C 0.396 3.604 9 O -0.442 6.442 10 N -0.337 5.337 11 C 0.027 3.973 12 C -0.125 4.125 13 N -0.196 5.196 14 C -0.106 4.106 15 C 0.227 3.773 16 O -0.507 6.507 17 N -0.213 5.213 18 C -0.464 4.464 19 H 0.093 0.907 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.198 1.198 26 C -0.144 4.144 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.257 0.743 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.223 17.917 7.697 26.017 hybrid contribution -1.147 -0.324 -1.128 1.641 sum 16.076 17.593 6.568 24.721 Atomic orbital electron populations 1.20340 0.84011 1.05025 1.04483 1.25126 0.99504 0.86394 1.00137 1.73624 0.89627 1.23910 1.21484 1.84524 1.21094 1.23215 1.67882 1.25283 0.98221 0.83172 0.95706 1.20752 0.87418 0.99074 1.06625 1.21811 0.93864 0.94452 1.18587 1.16972 0.75499 0.84105 0.83789 1.90847 1.51693 1.68884 1.32740 1.45728 1.69206 1.10260 1.08546 1.22417 0.94103 0.80550 1.00277 1.24347 0.94539 0.96506 0.97062 1.68729 1.04491 1.32590 1.13816 1.22385 0.95796 0.99213 0.93226 1.20884 0.86542 0.86093 0.83807 1.90505 1.72152 1.57000 1.31088 1.41926 1.27195 1.42294 1.09889 1.19587 1.06923 1.23623 0.96219 0.90680 1.25988 1.01528 0.99518 0.94105 1.69652 1.41946 1.44598 0.99861 0.85032 0.77617 0.78240 0.77726 1.19842 1.19331 1.19817 1.24461 0.98218 0.92338 0.99362 0.89318 0.88647 0.89331 0.85902 0.87015 0.88946 0.74287 0.86767 0.87367 0.87563 0.86641 0.89362 0.76904 0.91283 0.89355 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.49 71.24 0.75 -0.50 16 2 C 0.05 0.98 7.59 45.16 0.34 1.32 16 3 N -0.38 -7.87 12.01 -44.77 -0.54 -8.41 16 4 O 0.09 1.62 11.06 76.94 0.85 2.47 16 5 C 0.04 0.56 7.55 25.48 0.19 0.76 16 6 C -0.08 -0.46 10.33 71.24 0.74 0.27 16 7 C -0.28 -5.14 6.24 -18.74 -0.12 -5.26 16 8 C 0.61 12.81 7.60 86.65 0.66 13.47 16 9 O -0.56 -16.95 16.70 -4.07 -0.07 -17.01 16 10 N -0.69 -10.70 5.38 -444.99 -2.40 -13.09 16 11 C 0.13 2.70 4.59 45.44 0.21 2.91 16 12 C 0.00 0.08 7.45 83.57 0.62 0.70 16 13 N -0.47 -14.12 5.82 -932.63 -5.43 -19.55 16 14 C 0.03 0.81 5.30 85.56 0.45 1.26 16 15 C 0.44 20.80 7.85 87.66 0.69 21.49 16 16 O -0.62 -35.39 16.01 -3.08 -0.05 -35.44 16 17 N -0.58 -29.22 5.29 -306.98 -1.62 -30.84 16 18 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 22 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C -0.01 -0.36 7.52 83.57 0.63 0.27 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.67 8.11 -2.38 -0.02 0.65 16 33 H 0.42 3.97 8.74 -92.71 -0.81 3.16 16 34 H 0.11 2.84 7.45 -2.39 -0.02 2.83 16 35 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.11 1.20 7.90 -2.39 -0.02 1.19 16 37 H 0.12 3.07 8.08 -2.39 -0.02 3.05 16 38 H 0.09 2.29 7.30 -2.39 -0.02 2.28 16 39 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 40 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.09 2.01 7.42 -2.39 -0.02 1.99 16 42 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -80.01 369.25 -0.96 -80.97 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.46 Total: 26.37 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.44 Total: 18.34 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -9.70 Total: -120.71 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: 0.73 Total: -49.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -80.01 -0.96 -80.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494335327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.070 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds