Wall clock time and date at job start Fri Apr 10 2020 18:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30015 * 127.33713 * 2 1 4 4 O 1.20658 * 112.30289 * 179.67974 * 3 2 1 5 5 C 1.33488 * 113.15744 * 0.50925 * 4 3 2 6 6 C 1.37367 * 106.33950 * 359.51382 * 5 4 3 7 7 C 1.47400 * 128.56254 * 180.24692 * 6 5 4 8 8 O 1.21606 * 119.99814 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00046 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.53931 * 113.73369 * 271.72616 * 11 10 9 13 13 N 1.47961 * 86.18314 * 221.92215 * 12 11 10 14 14 C 1.46895 * 111.00390 * 137.58301 * 13 12 11 15 15 C 1.50696 * 109.47429 * 70.63980 * 14 13 12 16 16 O 1.21296 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99906 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99961 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99934 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00059 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46806 * 60.00162 * 22 20 18 24 24 H 1.48501 * 109.47471 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47465 * 300.00549 * 22 20 18 26 26 C 1.47961 * 90.76043 * 24.68718 * 13 12 11 27 27 H 1.09000 * 109.47074 * 270.02603 * 1 2 3 28 28 H 1.09004 * 109.46787 * 30.02678 * 1 2 3 29 29 H 1.09000 * 109.46867 * 150.02256 * 1 2 3 30 30 H 1.08002 * 126.83351 * 179.78327 * 5 4 3 31 31 H 0.97000 * 120.00227 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.46941 * 299.99623 * 10 9 7 33 33 H 1.08998 * 109.47287 * 59.99820 * 10 9 7 34 34 H 1.09003 * 112.94127 * 43.42946 * 11 10 9 35 35 H 1.09003 * 113.75906 * 336.23569 * 12 11 10 36 36 H 1.09004 * 113.76280 * 107.60438 * 12 11 10 37 37 H 1.08997 * 109.47294 * 190.64314 * 14 13 12 38 38 H 1.09002 * 109.46983 * 310.63781 * 14 13 12 39 39 H 0.96998 * 120.00235 * 359.97438 * 17 15 14 40 40 H 0.96998 * 120.00030 * 179.97438 * 21 20 18 41 41 H 1.09006 * 113.75727 * 220.99148 * 26 13 12 42 42 H 1.09002 * 113.76050 * 89.63231 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0062 5 6 3.6495 -0.6007 0.0006 6 6 2.3991 -1.1696 0.0004 7 6 2.0401 -2.5992 0.0003 8 8 0.8706 -2.9324 -0.0004 9 7 3.0080 -3.5371 0.0009 10 6 2.6511 -4.9580 0.0002 11 6 3.9259 -5.8040 0.0017 12 6 4.4674 -6.1110 -1.4061 13 7 4.7175 -7.4800 -0.9037 14 6 4.3276 -8.4861 -1.9005 15 6 5.2964 -8.4519 -3.0543 16 8 6.2211 -7.6670 -3.0468 17 7 5.1353 -9.2936 -4.0946 18 6 6.0170 -9.2629 -5.1440 19 1 6.8404 -8.5639 -5.1373 20 6 5.8513 -10.1309 -6.2162 21 7 4.8493 -10.9810 -6.2246 22 14 7.0522 -10.0886 -7.6465 23 1 8.4209 -10.3857 -7.1525 24 1 6.6577 -11.1052 -8.6544 25 1 7.0326 -8.7408 -8.2697 26 6 3.6657 -7.3162 0.1239 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.5967 -1.1195 0.0011 31 1 3.9409 -3.2714 0.0010 32 1 2.0635 -5.1854 0.8896 33 1 2.0650 -5.1850 -0.8904 34 1 4.6821 -5.4317 0.6928 35 1 3.7099 -6.0619 -2.1884 36 1 5.3754 -5.5624 -1.6567 37 1 4.3420 -9.4754 -1.4431 38 1 3.3230 -8.2681 -2.2630 39 1 4.3961 -9.9216 -4.1005 40 1 4.7334 -11.5867 -6.9733 41 1 3.9331 -7.7308 1.0960 42 1 2.6737 -7.6197 -0.2107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494586767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:51 Heat of formation + Delta-G solvation = 25.879050 kcal Electronic energy + Delta-G solvation = -25932.513844 eV Core-core repulsion = 21917.294017 eV Total energy + Delta-G solvation = -4015.219826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.30112 -40.40258 -39.51651 -37.75589 -35.17874 -34.79058 -33.93143 -32.64342 -31.37350 -30.76108 -29.11393 -27.59233 -26.04450 -25.30404 -24.40727 -22.55180 -21.72311 -20.96946 -19.78069 -19.26059 -18.52176 -18.11114 -17.88518 -16.90168 -16.52972 -16.24968 -15.62321 -15.46993 -15.18096 -14.77600 -14.62587 -14.30302 -13.94078 -13.66529 -13.64431 -13.51550 -13.35248 -12.98223 -12.82131 -12.56391 -12.17607 -11.77394 -11.69725 -11.52720 -11.39894 -11.07826 -10.74381 -10.69150 -10.46857 -10.37734 -10.29827 -10.23296 -10.17850 -9.52416 -9.41952 -8.71113 -8.27197 -7.99512 -6.44357 -3.85448 0.64142 1.41420 2.45972 2.83733 2.86582 3.17751 3.23844 3.27900 3.64321 3.84918 3.88624 3.93666 4.17449 4.29888 4.42738 4.52774 4.57751 4.88778 4.92758 5.02392 5.18894 5.19836 5.22068 5.29777 5.34310 5.37052 5.47254 5.53749 5.67954 5.69515 5.78250 5.80179 5.94121 6.03694 6.22234 6.23714 6.56651 7.06213 7.15149 7.52128 7.77451 7.82420 8.02367 8.58109 9.14800 9.50928 10.02360 10.73279 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.002119 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.697631 B =13207.905479 C =13870.207903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 N -0.360 5.360 4 O 0.098 5.902 5 C -0.002 4.002 6 C -0.256 4.256 7 C 0.595 3.405 8 O -0.528 6.528 9 N -0.719 5.719 10 C 0.130 3.870 11 C -0.135 4.135 12 C 0.025 3.975 13 N -0.453 5.453 14 C 0.010 3.990 15 C 0.443 3.557 16 O -0.581 6.581 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.009 3.991 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.227 0.773 31 H 0.401 0.599 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.091 0.909 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 16.050 14.986 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.068 5.068 4 O 0.039 5.961 5 C -0.085 4.085 6 C -0.263 4.263 7 C 0.381 3.619 8 O -0.405 6.405 9 N -0.370 5.370 10 C 0.006 3.994 11 C -0.154 4.154 12 C -0.103 4.103 13 N -0.176 5.176 14 C -0.122 4.122 15 C 0.228 3.772 16 O -0.465 6.465 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.121 4.121 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.244 0.756 31 H 0.236 0.764 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.653 17.258 14.999 23.813 hybrid contribution -0.188 -1.221 -1.153 1.689 sum -6.841 16.037 13.846 22.264 Atomic orbital electron populations 1.20288 0.84784 1.04536 1.03957 1.24901 0.99048 0.86246 0.99042 1.73705 0.89224 1.23559 1.20288 1.84587 1.21598 1.22990 1.66912 1.26482 1.00328 0.84175 0.97520 1.22362 0.92929 0.95631 1.15370 1.16818 0.85509 0.83062 0.76525 1.90804 1.18197 1.81931 1.49614 1.45807 1.09288 1.06597 1.75334 1.21510 0.96851 0.78184 1.02839 1.23360 0.96904 0.95390 0.99767 1.23884 1.00972 0.91461 0.94011 1.68403 1.38352 1.02397 1.08399 1.22464 0.97353 0.98245 0.94155 1.19675 0.88164 0.85037 0.84306 1.90512 1.34312 1.41472 1.80196 1.41872 1.27600 1.33306 1.17250 1.19640 1.08104 1.19063 0.96153 0.87995 1.25267 0.97614 0.95843 0.99205 1.69600 1.29963 1.21890 1.32820 0.85918 0.80184 0.78000 0.80114 1.19857 1.20948 1.19918 1.23967 0.95529 0.93761 0.98820 0.89710 0.90349 0.88527 0.75636 0.76441 0.90775 0.90850 0.87617 0.91407 0.88761 0.89101 0.92770 0.77481 0.91782 0.89032 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.15 36.01 0.37 -0.29 16 2 C 0.07 0.70 7.58 -79.77 -0.60 0.10 16 3 N -0.36 -3.74 12.01 34.78 0.42 -3.33 16 4 O 0.10 0.83 11.06 18.66 0.21 1.03 16 5 C 0.00 -0.01 11.85 30.42 0.36 0.35 16 6 C -0.26 -2.30 6.47 -102.89 -0.67 -2.97 16 7 C 0.59 6.15 7.81 -12.53 -0.10 6.06 16 8 O -0.53 -7.22 15.69 5.27 0.08 -7.13 16 9 N -0.72 -5.76 5.55 -61.39 -0.34 -6.10 16 10 C 0.13 1.15 5.53 -4.04 -0.02 1.13 16 11 C -0.13 -1.27 3.94 -89.69 -0.35 -1.62 16 12 C 0.03 0.35 6.31 -2.77 -0.02 0.33 16 13 N -0.45 -6.97 5.95 -239.73 -1.43 -8.40 16 14 C 0.01 0.17 5.31 -4.98 -0.03 0.14 16 15 C 0.44 10.29 7.59 -10.99 -0.08 10.20 16 16 O -0.58 -15.39 15.13 5.54 0.08 -15.31 16 17 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.01 0.09 7.54 -2.77 -0.02 0.07 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.89 7.11 -51.93 -0.37 0.52 16 30 H 0.23 0.27 7.68 -52.49 -0.40 -0.13 16 31 H 0.40 2.10 7.66 -40.82 -0.31 1.78 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 36 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 39 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -35.06 363.42 -6.74 -41.79 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.47 Total: 8.39 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.41 Total: 5.56 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.68 Total: -55.70 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.37 Total: -21.41 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.06 -6.74 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494586767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.673 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds