Wall clock time and date at job start Fri Apr 10 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30015 * 127.33713 * 2 1 4 4 O 1.20658 * 112.30289 * 179.67974 * 3 2 1 5 5 C 1.33488 * 113.15744 * 0.50925 * 4 3 2 6 6 C 1.37367 * 106.33950 * 359.51382 * 5 4 3 7 7 C 1.47400 * 128.56254 * 180.24692 * 6 5 4 8 8 O 1.21606 * 119.99814 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00046 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.53931 * 113.73369 * 271.72616 * 11 10 9 13 13 N 1.47961 * 86.18314 * 221.92215 * 12 11 10 14 14 C 1.46895 * 111.00390 * 137.58301 * 13 12 11 15 15 C 1.50696 * 109.47429 * 70.63980 * 14 13 12 16 16 O 1.21296 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99906 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99961 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99934 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00059 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46806 * 60.00162 * 22 20 18 24 24 H 1.48501 * 109.47471 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47465 * 300.00549 * 22 20 18 26 26 C 1.47961 * 90.76043 * 24.68718 * 13 12 11 27 27 H 1.09000 * 109.47074 * 270.02603 * 1 2 3 28 28 H 1.09004 * 109.46787 * 30.02678 * 1 2 3 29 29 H 1.09000 * 109.46867 * 150.02256 * 1 2 3 30 30 H 1.08002 * 126.83351 * 179.78327 * 5 4 3 31 31 H 0.97000 * 120.00227 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.46941 * 299.99623 * 10 9 7 33 33 H 1.08998 * 109.47287 * 59.99820 * 10 9 7 34 34 H 1.09003 * 112.94127 * 43.42946 * 11 10 9 35 35 H 1.09003 * 113.75906 * 336.23569 * 12 11 10 36 36 H 1.09004 * 113.76280 * 107.60438 * 12 11 10 37 37 H 1.08997 * 109.47294 * 190.64314 * 14 13 12 38 38 H 1.09002 * 109.46983 * 310.63781 * 14 13 12 39 39 H 0.96998 * 120.00235 * 359.97438 * 17 15 14 40 40 H 0.96998 * 120.00030 * 179.97438 * 21 20 18 41 41 H 1.09006 * 113.75727 * 220.99148 * 26 13 12 42 42 H 1.09002 * 113.76050 * 89.63231 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0062 5 6 3.6495 -0.6007 0.0006 6 6 2.3991 -1.1696 0.0004 7 6 2.0401 -2.5992 0.0003 8 8 0.8706 -2.9324 -0.0004 9 7 3.0080 -3.5371 0.0009 10 6 2.6511 -4.9580 0.0002 11 6 3.9259 -5.8040 0.0017 12 6 4.4674 -6.1110 -1.4061 13 7 4.7175 -7.4800 -0.9037 14 6 4.3276 -8.4861 -1.9005 15 6 5.2964 -8.4519 -3.0543 16 8 6.2211 -7.6670 -3.0468 17 7 5.1353 -9.2936 -4.0946 18 6 6.0170 -9.2629 -5.1440 19 1 6.8404 -8.5639 -5.1373 20 6 5.8513 -10.1309 -6.2162 21 7 4.8493 -10.9810 -6.2246 22 14 7.0522 -10.0886 -7.6465 23 1 8.4209 -10.3857 -7.1525 24 1 6.6577 -11.1052 -8.6544 25 1 7.0326 -8.7408 -8.2697 26 6 3.6657 -7.3162 0.1239 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.5967 -1.1195 0.0011 31 1 3.9409 -3.2714 0.0010 32 1 2.0635 -5.1854 0.8896 33 1 2.0650 -5.1850 -0.8904 34 1 4.6821 -5.4317 0.6928 35 1 3.7099 -6.0619 -2.1884 36 1 5.3754 -5.5624 -1.6567 37 1 4.3420 -9.4754 -1.4431 38 1 3.3230 -8.2681 -2.2630 39 1 4.3961 -9.9216 -4.1005 40 1 4.7334 -11.5867 -6.9733 41 1 3.9331 -7.7308 1.0960 42 1 2.6737 -7.6197 -0.2107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494586767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:50 Heat of formation + Delta-G solvation = -3.054047 kcal Electronic energy + Delta-G solvation = -25933.768477 eV Core-core repulsion = 21917.294017 eV Total energy + Delta-G solvation = -4016.474459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.97399 -41.42275 -40.47679 -39.47148 -36.09691 -35.82212 -35.49079 -33.41919 -33.24318 -31.92382 -29.82343 -28.71078 -27.03956 -26.82751 -25.47156 -23.67917 -22.38771 -21.68517 -21.01313 -20.64126 -19.90273 -19.21674 -18.79226 -17.85197 -17.60141 -17.34390 -16.68601 -16.58011 -16.43172 -16.22520 -15.77940 -15.59252 -15.28744 -14.88647 -14.58896 -14.32514 -14.18968 -14.12680 -13.68698 -13.52638 -13.46161 -13.40227 -13.06168 -12.84425 -12.45058 -12.38626 -12.28297 -12.13637 -11.78201 -11.64657 -11.48814 -11.22273 -10.99021 -10.82279 -10.32666 -10.15460 -10.02512 -9.65792 -8.47383 -5.96276 0.06103 0.71147 1.38909 1.40840 1.51741 1.83558 2.04443 2.11187 2.26787 2.28634 2.84412 2.99328 3.19330 3.26766 3.31793 3.47755 3.71193 3.80088 3.94614 4.20836 4.22829 4.32625 4.41417 4.42755 4.52568 4.54462 4.58977 4.60010 4.66596 4.73794 4.75563 4.88656 4.92889 5.12628 5.21991 5.38571 5.39534 5.46552 5.90840 6.08938 6.42747 6.59107 7.08888 7.11626 7.18951 7.55235 8.10540 8.69832 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.002119 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.697631 B =13207.905479 C =13870.207903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.052 3.948 3 N -0.383 5.383 4 O 0.095 5.905 5 C 0.033 3.967 6 C -0.284 4.284 7 C 0.596 3.404 8 O -0.569 6.569 9 N -0.706 5.706 10 C 0.136 3.864 11 C -0.103 4.103 12 C 0.017 3.983 13 N -0.482 5.482 14 C 0.022 3.978 15 C 0.440 3.560 16 O -0.617 6.617 17 N -0.576 5.576 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.014 3.986 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.277 0.723 31 H 0.416 0.584 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.111 0.889 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 16.113 15.980 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 N -0.092 5.092 4 O 0.037 5.963 5 C -0.049 4.049 6 C -0.292 4.292 7 C 0.383 3.617 8 O -0.450 6.450 9 N -0.358 5.358 10 C 0.012 3.988 11 C -0.122 4.122 12 C -0.112 4.112 13 N -0.205 5.205 14 C -0.110 4.110 15 C 0.228 3.772 16 O -0.503 6.503 17 N -0.213 5.213 18 C -0.463 4.463 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.115 4.115 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.292 0.708 31 H 0.254 0.746 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.128 17.320 16.012 24.371 hybrid contribution -0.299 -1.220 -1.414 1.892 sum -6.427 16.100 14.598 22.663 Atomic orbital electron populations 1.20282 0.84396 1.04316 1.04400 1.25241 0.99827 0.86831 0.99116 1.73707 0.89888 1.24140 1.21474 1.84555 1.20879 1.24151 1.66666 1.27321 1.01068 0.82982 0.93553 1.22300 0.94045 0.94840 1.17992 1.16972 0.85168 0.83733 0.75825 1.90783 1.19867 1.82575 1.51741 1.45671 1.09830 1.05980 1.74318 1.21388 0.96363 0.78461 1.02594 1.23145 0.97117 0.95018 0.96899 1.23868 1.00046 0.91001 0.96317 1.68407 1.40865 1.02356 1.08853 1.22353 0.96153 1.00073 0.92380 1.20773 0.88316 0.83253 0.84907 1.90478 1.36169 1.42581 1.81103 1.41968 1.27596 1.34158 1.17594 1.19614 1.08772 1.19852 0.98018 0.90289 1.26049 0.99151 0.95069 1.01114 1.69664 1.30846 1.22064 1.33618 0.84997 0.78020 0.78250 0.77132 1.19643 1.19546 1.19674 1.24095 0.94899 0.94391 0.98117 0.88945 0.89466 0.89738 0.70794 0.74628 0.89876 0.92332 0.85581 0.92502 0.90795 0.87451 0.90803 0.77083 0.91306 0.87076 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.15 71.24 0.72 -0.58 16 2 C 0.05 1.03 7.58 45.16 0.34 1.37 16 3 N -0.38 -7.71 12.01 -44.78 -0.54 -8.25 16 4 O 0.10 1.44 11.06 77.03 0.85 2.29 16 5 C 0.03 0.31 11.85 67.61 0.80 1.11 16 6 C -0.28 -4.75 6.47 -18.74 -0.12 -4.87 16 7 C 0.60 11.65 7.81 86.66 0.68 12.33 16 8 O -0.57 -15.51 15.69 -4.05 -0.06 -15.57 16 9 N -0.71 -9.72 5.55 -466.40 -2.59 -12.31 16 10 C 0.14 2.11 5.53 86.38 0.48 2.59 16 11 C -0.10 -1.65 3.94 -10.15 -0.04 -1.69 16 12 C 0.02 0.44 6.31 86.40 0.55 0.98 16 13 N -0.48 -14.02 5.95 -912.36 -5.43 -19.45 16 14 C 0.02 0.73 5.31 85.56 0.45 1.19 16 15 C 0.44 20.64 7.59 87.66 0.67 21.31 16 16 O -0.62 -33.41 15.13 -3.08 -0.05 -33.46 16 17 N -0.58 -29.43 5.29 -306.99 -1.62 -31.05 16 18 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 21 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 22 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.01 0.25 7.54 86.40 0.65 0.90 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.63 7.11 -2.39 -0.02 1.62 16 30 H 0.28 -0.62 7.68 -2.91 -0.02 -0.64 16 31 H 0.42 3.01 7.66 -92.71 -0.71 2.30 16 32 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.13 7.84 -2.39 -0.02 1.11 16 34 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.61 7.53 -2.39 -0.02 1.59 16 36 H 0.07 2.22 8.09 -2.38 -0.02 2.20 16 37 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.07 2.16 7.69 -2.39 -0.02 2.14 16 39 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 40 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 41 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.08 1.37 7.75 -2.39 -0.02 1.35 16 Total: -1.00 -78.62 363.42 -1.03 -79.65 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.36 Total: 26.43 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.46 Total: 16.34 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -9.89 Total: -120.43 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: 0.74 Total: -46.73 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -78.62 -1.03 -79.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494586767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.596 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds