Wall clock time and date at job start Fri Apr 10 2020 18:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.66721 * 2 1 4 4 C 1.42274 * 103.92393 * 180.08145 * 3 2 1 5 5 C 1.48328 * 126.93878 * 179.88849 * 4 3 2 6 6 O 1.21488 * 120.00069 * 359.71273 * 5 4 3 7 7 N 1.34774 * 119.99743 * 179.71027 * 5 4 3 8 8 C 1.46509 * 119.99927 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.64086 * 323.30076 * 8 7 5 10 10 C 1.54590 * 110.72159 * 86.45256 * 8 7 5 11 11 C 1.54004 * 105.13802 * 140.49496 * 10 8 7 12 12 N 1.47898 * 107.05442 * 1.22299 * 11 10 8 13 13 C 1.46902 * 110.99974 * 214.15474 * 12 11 10 14 14 C 1.50697 * 109.47354 * 176.64065 * 13 12 11 15 15 O 1.21299 * 119.99898 * 6.13559 * 14 13 12 16 16 N 1.34779 * 120.00182 * 186.40994 * 14 13 12 17 17 C 1.37094 * 120.00139 * 179.72668 * 16 14 13 18 18 H 1.08002 * 120.00011 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00079 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00079 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47064 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46933 * 119.99698 * 21 19 17 24 24 H 1.48503 * 109.46571 * 239.99757 * 21 19 17 25 25 C 1.48529 * 105.82565 * 334.66947 * 12 11 10 26 26 N 1.30988 * 106.12068 * 359.62751 * 4 3 2 27 27 O 1.20907 * 111.44006 * 0.24262 * 26 4 3 28 28 H 1.08999 * 109.46845 * 180.31538 * 1 2 3 29 29 H 1.08990 * 109.47240 * 300.31853 * 1 2 3 30 30 H 1.09000 * 109.46789 * 60.32193 * 1 2 3 31 31 H 1.08005 * 128.03888 * 359.95500 * 3 2 1 32 32 H 0.97003 * 120.00298 * 359.97438 * 7 5 4 33 33 H 1.08998 * 110.31433 * 21.58094 * 10 8 7 34 34 H 1.08998 * 110.31257 * 259.40775 * 10 8 7 35 35 H 1.08994 * 109.91482 * 241.87062 * 11 10 8 36 36 H 1.08997 * 109.91252 * 120.57376 * 11 10 8 37 37 H 1.09000 * 109.47070 * 56.63678 * 13 12 11 38 38 H 1.09004 * 109.46925 * 296.64079 * 13 12 11 39 39 H 0.97005 * 119.99449 * 359.72797 * 16 14 13 40 40 H 0.97002 * 119.99956 * 180.02562 * 20 19 17 41 41 H 1.08995 * 110.67280 * 157.63942 * 25 12 11 42 42 H 1.08997 * 110.66774 * 280.77751 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6272 0.5353 -0.0020 5 6 4.9076 1.2841 -0.0051 6 8 4.9008 2.4989 -0.0115 7 7 6.0784 0.6167 -0.0008 8 6 7.3432 1.3562 -0.0033 9 1 7.2626 2.2531 -0.6174 10 6 7.7689 1.7166 1.4384 11 6 9.2952 1.5138 1.4697 12 7 9.7048 1.0935 0.1121 13 6 10.8287 0.1493 0.1699 14 6 11.1636 -0.3190 -1.2227 15 8 10.6051 0.1752 -2.1794 16 7 12.0797 -1.2907 -1.4050 17 6 12.3803 -1.7205 -2.6716 18 1 11.8827 -1.2809 -3.5234 19 6 13.3242 -2.7226 -2.8594 20 7 13.9292 -3.2580 -1.8229 21 14 13.7333 -3.3089 -4.5853 22 1 12.9200 -2.5524 -5.5708 23 1 15.1759 -3.0830 -4.8558 24 1 13.4289 -4.7578 -4.7009 25 6 8.5067 0.4585 -0.4941 26 7 3.4761 -0.7658 0.0053 27 8 2.3073 -1.0750 0.0064 28 1 -0.3633 -1.0277 0.0057 29 1 -0.3633 0.5187 0.8870 30 1 -0.3633 0.5088 -0.8929 31 1 2.0302 2.1272 -0.0007 32 1 6.0838 -0.3533 0.0048 33 1 7.2843 1.0519 2.1535 34 1 7.5208 2.7551 1.6578 35 1 9.5520 0.7387 2.1916 36 1 9.7887 2.4491 1.7336 37 1 10.5522 -0.7073 0.7846 38 1 11.6968 0.6440 0.6055 39 1 12.5262 -1.6858 -0.6398 40 1 14.5885 -3.9573 -1.9540 41 1 8.5720 0.4738 -1.5819 42 1 8.3859 -0.5615 -0.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665439819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:08 Heat of formation + Delta-G solvation = 2.853864 kcal Electronic energy + Delta-G solvation = -26297.195687 eV Core-core repulsion = 22280.977414 eV Total energy + Delta-G solvation = -4016.218273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.41907 -40.14507 -38.89612 -37.47605 -34.66132 -34.49235 -33.92355 -33.59451 -31.37347 -30.87103 -28.54977 -28.25207 -26.71135 -24.99368 -24.09686 -23.03210 -21.32545 -20.95332 -20.12729 -19.19118 -18.17681 -17.93802 -17.88699 -17.15802 -16.53094 -16.13851 -15.38539 -14.98890 -14.89897 -14.58977 -14.32513 -14.24617 -14.10446 -13.85531 -13.76643 -13.56978 -13.24853 -12.90616 -12.78142 -12.42068 -11.94128 -11.83524 -11.78637 -11.53415 -11.36455 -11.21590 -10.91980 -10.79633 -10.68012 -10.47148 -10.35248 -10.24294 -9.80917 -9.52328 -9.27108 -8.46854 -8.07575 -7.95926 -6.43763 -3.84543 0.79459 1.31371 2.53378 2.72406 2.92246 3.15103 3.25981 3.33233 3.63221 3.87298 4.01787 4.13532 4.30709 4.54342 4.60436 4.74172 4.74391 4.89636 4.91087 5.00081 5.11408 5.13303 5.23224 5.30245 5.35727 5.38261 5.55806 5.64439 5.77402 5.84153 5.87583 5.96733 6.07195 6.23907 6.29301 6.42957 7.08019 7.12674 7.21553 7.53740 7.66200 7.87521 8.04140 8.59146 9.16053 9.51738 10.03159 10.73970 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.002395 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.019461 B =11685.791861 C =12869.794076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.185 4.185 4 C -0.023 4.023 5 C 0.600 3.400 6 O -0.520 6.520 7 N -0.703 5.703 8 C 0.139 3.861 9 H 0.107 0.893 10 C -0.140 4.140 11 C 0.034 3.966 12 N -0.489 5.489 13 C 0.038 3.962 14 C 0.441 3.559 15 O -0.578 6.578 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.037 3.963 26 N -0.331 5.331 27 O 0.122 5.878 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.295 5.115 9.443 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.208 4.208 4 C -0.183 4.183 5 C 0.384 3.616 6 O -0.394 6.394 7 N -0.355 5.355 8 C 0.034 3.966 9 H 0.125 0.875 10 C -0.179 4.179 11 C -0.094 4.094 12 N -0.214 5.214 13 C -0.094 4.094 14 C 0.226 3.774 15 O -0.463 6.463 16 N -0.199 5.199 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.092 4.092 26 N -0.032 5.032 27 O 0.047 5.953 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.199 0.801 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.384 5.638 8.488 24.594 hybrid contribution 0.136 -1.125 0.268 1.165 sum -22.247 4.513 8.756 24.330 Atomic orbital electron populations 1.20386 0.83318 1.05002 1.04453 1.24531 0.96615 0.85415 1.03149 1.22433 0.89658 1.01627 1.07036 1.23539 0.96850 0.90162 1.07711 1.16845 0.81541 0.86387 0.76861 1.90805 1.86686 1.12390 1.49544 1.45874 1.05150 1.10842 1.73598 1.22070 0.81365 0.96237 0.96929 0.87499 1.22808 0.95561 1.02767 0.96748 1.22924 0.94508 1.01171 0.90803 1.64497 1.04550 1.36533 1.15772 1.22106 0.95312 0.94702 0.97286 1.19704 0.84291 0.83578 0.89783 1.90496 1.54585 1.59030 1.42152 1.41872 1.35853 1.32859 1.09353 1.19748 1.20612 1.17263 0.85136 0.87826 1.25273 0.96504 0.96813 0.99405 1.69621 1.27387 1.27334 1.29918 0.85799 0.78278 0.78387 0.81885 1.19203 1.20716 1.20769 1.23536 0.87533 0.94618 1.03462 1.74199 0.97307 1.15580 1.16088 1.84795 1.11100 1.33497 1.65958 0.89571 0.88865 0.88828 0.80146 0.75769 0.91282 0.90290 0.93610 0.89945 0.93316 0.88835 0.77476 0.91906 0.86655 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.01 0.38 0.18 16 2 C -0.03 -0.25 7.47 -35.35 -0.26 -0.51 16 3 C -0.19 -1.69 10.92 -39.07 -0.43 -2.12 16 4 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 5 C 0.60 8.27 7.84 -12.11 -0.09 8.17 16 6 O -0.52 -8.40 16.68 5.38 0.09 -8.31 16 7 N -0.70 -9.12 5.14 -52.79 -0.27 -9.40 16 8 C 0.14 1.95 3.34 -66.07 -0.22 1.73 16 9 H 0.11 1.67 7.69 -51.93 -0.40 1.27 16 10 C -0.14 -1.73 6.67 -25.37 -0.17 -1.89 16 11 C 0.03 0.45 6.70 -2.75 -0.02 0.43 16 12 N -0.49 -8.22 5.11 -231.89 -1.18 -9.40 16 13 C 0.04 0.67 5.30 -4.98 -0.03 0.64 16 14 C 0.44 10.33 7.42 -10.99 -0.08 10.25 16 15 O -0.58 -15.42 13.87 5.54 0.08 -15.34 16 16 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 17 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.04 0.60 5.20 -1.90 -0.01 0.59 16 26 N -0.33 -3.87 11.84 33.30 0.39 -3.48 16 27 O 0.12 1.18 11.18 17.24 0.19 1.37 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.41 4.85 8.30 -40.82 -0.34 4.51 16 33 H 0.07 0.79 8.05 -51.93 -0.42 0.38 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.54 7.68 -51.93 -0.40 0.15 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.79 7.98 -51.93 -0.41 0.37 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.12 2.27 6.43 -51.93 -0.33 1.94 16 42 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -33.40 361.01 -6.90 -40.30 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.51 Total: 12.11 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.77 Total: 8.67 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.40 Total: -60.27 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.36 Total: -22.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.40 -6.90 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665439819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.151 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds