Wall clock time and date at job start Fri Apr 10 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41258 * 128.07793 * 2 1 4 4 N 1.30127 * 106.59210 * 179.97438 * 3 2 1 5 5 O 1.20884 * 111.98046 * 0.02562 * 4 3 2 6 6 C 1.34637 * 111.47035 * 359.97438 * 5 4 3 7 7 C 1.47510 * 126.94542 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99914 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00235 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00383 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.31007 * 120.00275 * 127.15444 * 11 10 9 13 13 C 1.50700 * 119.99432 * 7.55558 * 12 11 10 14 14 N 1.46901 * 109.46932 * 127.00802 * 13 12 11 15 15 C 1.46892 * 111.00326 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47507 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99889 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00270 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99932 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00133 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99858 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99924 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00186 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46907 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47403 * 119.99740 * 23 21 19 26 26 H 1.48498 * 109.47336 * 240.00294 * 23 21 19 27 27 H 1.08999 * 109.47512 * 89.97240 * 1 2 3 28 28 H 1.09003 * 109.47225 * 209.97582 * 1 2 3 29 29 H 1.09004 * 109.47022 * 329.97152 * 1 2 3 30 30 H 1.07999 * 126.70645 * 359.94925 * 3 2 1 31 31 H 0.96997 * 119.99944 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.46931 * 299.99936 * 10 9 7 33 33 H 1.08995 * 109.47097 * 59.99313 * 10 9 7 34 34 H 1.08000 * 120.00411 * 307.15277 * 11 10 9 35 35 H 1.07994 * 119.99985 * 187.56039 * 12 11 10 36 36 H 1.08994 * 109.47431 * 247.00710 * 13 12 11 37 37 H 1.09002 * 109.47546 * 7.01432 * 13 12 11 38 38 H 1.00907 * 111.00146 * 56.04170 * 14 13 12 39 39 H 1.08999 * 109.47331 * 300.00296 * 15 14 13 40 40 H 1.09004 * 109.47381 * 60.00238 * 15 14 13 41 41 H 0.97001 * 120.00456 * 359.97438 * 18 16 15 42 42 H 0.97000 * 119.99984 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 0.0006 5 8 3.5994 -0.5735 0.0004 6 6 2.3508 -1.0771 0.0002 7 6 1.9695 -2.5020 -0.0005 8 8 0.7952 -2.8171 -0.0010 9 7 2.9228 -3.4548 -0.0006 10 6 2.5442 -4.8700 -0.0019 11 6 3.7868 -5.7225 -0.0024 12 6 3.9392 -6.6589 0.9011 13 6 2.8043 -6.9989 1.8325 14 7 2.5445 -8.4438 1.7806 15 6 1.4422 -8.8131 2.6786 16 6 1.2049 -10.2991 2.5981 17 8 1.8873 -10.9834 1.8650 18 7 0.2351 -10.8679 3.3413 19 6 0.0196 -12.2199 3.2684 20 1 0.6267 -12.8291 2.6151 21 6 -0.9806 -12.8063 4.0343 22 7 -1.7196 -12.0651 4.8288 23 14 -1.2747 -14.6482 3.9345 24 1 -0.3166 -15.2511 2.9732 25 1 -1.0783 -15.2543 5.2758 26 1 -2.6634 -14.9036 3.4744 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 2.0947 2.1541 -0.0008 31 1 3.8597 -3.2034 0.0002 32 1 1.9533 -5.0888 0.8875 33 1 1.9544 -5.0875 -0.8923 34 1 4.5518 -5.5616 -0.7475 35 1 4.8780 -7.1870 0.9783 36 1 3.0717 -6.7141 2.8501 37 1 1.9089 -6.4576 1.5271 38 1 3.3783 -8.9692 1.9971 39 1 1.7005 -8.5409 3.7020 40 1 0.5371 -8.2843 2.3795 41 1 -0.3099 -10.3209 3.9284 42 1 -2.4175 -12.4744 5.3638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669119940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:17 Heat of formation + Delta-G solvation = 16.097090 kcal Electronic energy + Delta-G solvation = -25130.536979 eV Core-core repulsion = 21114.892975 eV Total energy + Delta-G solvation = -4015.644004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.48458 -40.07897 -38.36017 -37.15191 -35.51577 -34.92845 -33.92335 -33.19399 -32.50506 -31.20510 -29.07637 -27.97236 -26.41163 -24.81897 -24.08183 -23.17352 -22.62852 -21.06117 -19.81665 -19.27211 -18.38038 -18.24604 -17.82315 -16.84632 -16.28134 -16.00519 -15.93072 -15.41097 -15.16857 -14.72112 -14.59282 -14.34761 -13.99638 -13.75492 -13.69805 -13.65032 -13.62072 -13.09961 -13.02734 -12.79629 -12.49335 -11.87258 -11.74400 -11.55164 -11.49547 -11.05591 -10.91337 -10.86229 -10.74794 -10.33764 -10.22128 -9.98701 -9.71218 -9.51687 -9.26085 -8.46724 -8.05981 -7.95558 -6.41320 -3.82148 0.33635 1.59376 1.69745 2.24923 2.56307 2.93675 3.16966 3.27554 3.34908 3.68450 3.91034 4.11498 4.13639 4.27505 4.41144 4.52412 4.54637 4.77250 4.85541 5.07133 5.14476 5.19632 5.24036 5.25080 5.29307 5.39623 5.46411 5.55505 5.64932 5.76259 5.79656 5.89431 5.97178 6.25510 6.31665 6.52601 6.88992 7.15549 7.50487 7.55973 7.61512 7.63448 8.06915 8.61516 9.18329 9.54680 10.05917 10.76484 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.001720 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.380864 B =16272.219985 C =17128.035975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.117 4.117 3 C -0.015 4.015 4 N -0.342 5.342 5 O 0.116 5.884 6 C -0.095 4.095 7 C 0.604 3.396 8 O -0.506 6.506 9 N -0.709 5.709 10 C 0.140 3.860 11 C -0.186 4.186 12 C -0.106 4.106 13 C 0.068 3.932 14 N -0.663 5.663 15 C 0.049 3.951 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.199 0.801 31 H 0.408 0.592 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.039 0.961 37 H 0.086 0.914 38 H 0.350 0.650 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 26.363 -7.342 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.193 4.193 4 N -0.041 5.041 5 O 0.042 5.958 6 C -0.160 4.160 7 C 0.387 3.613 8 O -0.382 6.382 9 N -0.360 5.360 10 C 0.018 3.982 11 C -0.206 4.206 12 C -0.125 4.125 13 C -0.061 4.061 14 N -0.295 5.295 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.216 0.784 31 H 0.243 0.757 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.169 0.831 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.594 26.183 -8.258 28.769 hybrid contribution -0.348 -0.336 1.222 1.314 sum 8.246 25.847 -7.037 28.029 Atomic orbital electron populations 1.20367 0.86149 1.04396 1.03627 1.21692 0.99176 0.90250 1.01063 1.25039 0.87678 1.02223 1.04317 1.73767 1.23133 0.91175 1.16039 1.84951 1.28155 1.15563 1.67127 1.24028 0.84723 0.96230 1.11047 1.16471 0.85745 0.81444 0.77606 1.90890 1.17102 1.80463 1.49699 1.45894 1.09790 1.06428 1.73933 1.20633 0.96093 0.77514 1.03952 1.22629 0.98803 0.99517 0.99606 1.22874 0.98445 0.96506 0.94725 1.21303 0.97218 0.90542 0.97005 1.60108 1.10613 1.03014 1.55793 1.21698 0.95736 0.96328 0.94545 1.19784 0.84313 0.88532 0.84742 1.90525 1.50031 1.63892 1.42291 1.41871 1.30720 1.08851 1.38590 1.19763 1.16213 0.83068 1.23821 0.87836 1.25273 0.96080 1.00517 0.96137 1.69622 1.21562 1.36255 1.26848 0.85791 0.78267 0.82154 0.78075 1.19208 1.20786 1.20738 0.89987 0.88971 0.90612 0.78391 0.75736 0.89397 0.89971 0.86168 0.86382 0.94360 0.89642 0.83067 0.93767 0.89462 0.77435 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 9.96 36.00 0.36 -0.20 16 2 C -0.12 -0.91 6.37 -103.99 -0.66 -1.58 16 3 C -0.01 -0.10 12.14 -17.13 -0.21 -0.31 16 4 N -0.34 -3.07 12.04 30.45 0.37 -2.70 16 5 O 0.12 0.99 11.04 15.57 0.17 1.17 16 6 C -0.09 -0.83 7.29 -36.32 -0.26 -1.09 16 7 C 0.60 5.86 7.82 -12.48 -0.10 5.76 16 8 O -0.51 -6.35 15.11 5.29 0.08 -6.27 16 9 N -0.71 -5.49 5.55 -62.54 -0.35 -5.83 16 10 C 0.14 1.23 5.76 -5.20 -0.03 1.20 16 11 C -0.19 -1.50 9.63 -36.03 -0.35 -1.85 16 12 C -0.11 -1.01 9.77 -36.03 -0.35 -1.36 16 13 C 0.07 0.79 5.77 -4.98 -0.03 0.76 16 14 N -0.66 -10.45 6.11 -116.34 -0.71 -11.16 16 15 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 16 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 17 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 18 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.75 6.73 -51.93 -0.35 0.40 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.20 0.70 8.06 -52.49 -0.42 0.27 16 31 H 0.41 2.25 8.29 -40.82 -0.34 1.91 16 32 H 0.09 0.86 5.30 -51.93 -0.28 0.58 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.98 5.29 -51.93 -0.27 0.70 16 38 H 0.35 5.60 8.42 -39.29 -0.33 5.27 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -33.72 368.94 -6.35 -40.07 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.21 Total: 12.71 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.99 Total: 4.45 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.03 Total: -57.98 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.34 Total: -20.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.72 -6.35 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669119940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.165 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds