Wall clock time and date at job start Fri Apr 10 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41258 * 128.07793 * 2 1 4 4 N 1.30127 * 106.59210 * 179.97438 * 3 2 1 5 5 O 1.20884 * 111.98046 * 0.02562 * 4 3 2 6 6 C 1.34637 * 111.47035 * 359.97438 * 5 4 3 7 7 C 1.47510 * 126.94542 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99914 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00235 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00383 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.31007 * 120.00275 * 127.15444 * 11 10 9 13 13 C 1.50700 * 119.99432 * 7.55558 * 12 11 10 14 14 N 1.46901 * 109.46932 * 127.00802 * 13 12 11 15 15 C 1.46892 * 111.00326 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47507 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99889 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00270 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99932 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00133 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99858 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99924 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00186 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46907 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47403 * 119.99740 * 23 21 19 26 26 H 1.48498 * 109.47336 * 240.00294 * 23 21 19 27 27 H 1.08999 * 109.47512 * 89.97240 * 1 2 3 28 28 H 1.09003 * 109.47225 * 209.97582 * 1 2 3 29 29 H 1.09004 * 109.47022 * 329.97152 * 1 2 3 30 30 H 1.07999 * 126.70645 * 359.94925 * 3 2 1 31 31 H 0.96997 * 119.99944 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.46931 * 299.99936 * 10 9 7 33 33 H 1.08995 * 109.47097 * 59.99313 * 10 9 7 34 34 H 1.08000 * 120.00411 * 307.15277 * 11 10 9 35 35 H 1.07994 * 119.99985 * 187.56039 * 12 11 10 36 36 H 1.08994 * 109.47431 * 247.00710 * 13 12 11 37 37 H 1.09002 * 109.47546 * 7.01432 * 13 12 11 38 38 H 1.00907 * 111.00146 * 56.04170 * 14 13 12 39 39 H 1.08999 * 109.47331 * 300.00296 * 15 14 13 40 40 H 1.09004 * 109.47381 * 60.00238 * 15 14 13 41 41 H 0.97001 * 120.00456 * 359.97438 * 18 16 15 42 42 H 0.97000 * 119.99984 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 0.0006 5 8 3.5994 -0.5735 0.0004 6 6 2.3508 -1.0771 0.0002 7 6 1.9695 -2.5020 -0.0005 8 8 0.7952 -2.8171 -0.0010 9 7 2.9228 -3.4548 -0.0006 10 6 2.5442 -4.8700 -0.0019 11 6 3.7868 -5.7225 -0.0024 12 6 3.9392 -6.6589 0.9011 13 6 2.8043 -6.9989 1.8325 14 7 2.5445 -8.4438 1.7806 15 6 1.4422 -8.8131 2.6786 16 6 1.2049 -10.2991 2.5981 17 8 1.8873 -10.9834 1.8650 18 7 0.2351 -10.8679 3.3413 19 6 0.0196 -12.2199 3.2684 20 1 0.6267 -12.8291 2.6151 21 6 -0.9806 -12.8063 4.0343 22 7 -1.7196 -12.0651 4.8288 23 14 -1.2747 -14.6482 3.9345 24 1 -0.3166 -15.2511 2.9732 25 1 -1.0783 -15.2543 5.2758 26 1 -2.6634 -14.9036 3.4744 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 2.0947 2.1541 -0.0008 31 1 3.8597 -3.2034 0.0002 32 1 1.9533 -5.0888 0.8875 33 1 1.9544 -5.0875 -0.8923 34 1 4.5518 -5.5616 -0.7475 35 1 4.8780 -7.1870 0.9783 36 1 3.0717 -6.7141 2.8501 37 1 1.9089 -6.4576 1.5271 38 1 3.3783 -8.9692 1.9971 39 1 1.7005 -8.5409 3.7020 40 1 0.5371 -8.2843 2.3795 41 1 -0.3099 -10.3209 3.9284 42 1 -2.4175 -12.4744 5.3638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669119940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:16 Heat of formation + Delta-G solvation = -10.390269 kcal Electronic energy + Delta-G solvation = -25131.685557 eV Core-core repulsion = 21114.892975 eV Total energy + Delta-G solvation = -4016.792582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.08253 -40.84656 -40.16515 -38.12219 -36.44111 -35.90778 -35.59268 -34.10698 -33.30345 -33.14897 -29.78096 -29.08151 -27.47446 -26.36296 -24.75505 -24.45940 -23.24201 -21.73815 -21.19345 -20.40005 -19.92047 -19.12386 -18.86815 -17.88355 -17.39772 -17.00830 -16.81983 -16.62171 -16.44328 -15.97537 -15.88261 -15.41366 -15.25894 -15.06449 -14.63089 -14.31605 -14.23686 -14.21622 -14.03646 -13.63748 -13.52568 -13.44948 -13.19216 -12.95939 -12.72645 -12.40435 -12.31831 -12.10847 -11.70620 -11.53474 -11.51482 -11.43745 -10.66842 -10.41638 -10.35678 -10.03216 -10.00362 -9.26242 -8.46884 -5.95798 -0.32297 0.97684 1.03980 1.37071 1.42409 1.56677 1.58294 1.83799 2.04597 2.26748 2.30695 3.02306 3.16667 3.20355 3.56612 3.61789 3.67328 3.77209 3.95961 4.05717 4.25308 4.30435 4.31467 4.45593 4.48400 4.56007 4.68063 4.73745 4.76931 4.79207 4.90912 4.96452 5.13532 5.29473 5.41209 5.58936 5.78641 5.89034 6.08836 6.22904 6.39894 6.59623 6.86025 6.99543 7.12316 7.55777 8.10813 8.70757 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.001720 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.380864 B =16272.219985 C =17128.035975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.120 4.120 3 C -0.003 4.003 4 N -0.364 5.364 5 O 0.110 5.890 6 C -0.108 4.108 7 C 0.604 3.396 8 O -0.540 6.540 9 N -0.696 5.696 10 C 0.139 3.861 11 C -0.166 4.166 12 C -0.122 4.122 13 C 0.070 3.930 14 N -0.678 5.678 15 C 0.063 3.937 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.233 0.767 31 H 0.420 0.580 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.346 0.654 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 27.876 -7.363 30.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.181 4.181 4 N -0.064 5.064 5 O 0.039 5.961 6 C -0.173 4.173 7 C 0.388 3.612 8 O -0.418 6.418 9 N -0.348 5.348 10 C 0.017 3.983 11 C -0.185 4.185 12 C -0.142 4.142 13 C -0.058 4.058 14 N -0.311 5.311 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.249 0.751 31 H 0.257 0.743 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.165 0.835 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.848 27.719 -8.266 30.248 hybrid contribution -0.403 -0.698 1.188 1.436 sum 8.445 27.020 -7.078 29.181 Atomic orbital electron populations 1.20402 0.85254 1.04631 1.04081 1.22020 0.99911 0.90329 1.00228 1.25568 0.86630 1.03477 1.02396 1.73752 1.24257 0.91306 1.17133 1.84936 1.27936 1.15605 1.67646 1.23946 0.85278 0.96003 1.12103 1.16592 0.85458 0.82035 0.77092 1.90872 1.18419 1.81083 1.51452 1.45777 1.10231 1.05818 1.72928 1.20572 0.96428 0.78109 1.03174 1.22745 0.98501 0.98250 0.98990 1.22843 0.98351 0.97768 0.95215 1.21343 0.98268 0.87796 0.98393 1.60105 1.10015 1.05482 1.55477 1.21550 0.97310 0.91509 0.96520 1.20866 0.82667 0.91019 0.82945 1.90490 1.51114 1.65724 1.43605 1.41946 1.31537 1.08277 1.39306 1.19724 1.17317 0.84403 1.24935 0.90253 1.26066 0.95245 1.04789 0.95273 1.69680 1.21673 1.37901 1.26899 0.84848 0.78212 0.76813 0.78317 1.19751 1.19524 1.19663 0.89361 0.90972 0.88085 0.75080 0.74299 0.90345 0.90712 0.83867 0.85386 0.93201 0.89558 0.83470 0.91365 0.87973 0.76959 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.96 71.24 0.71 -0.29 16 2 C -0.12 -1.72 6.37 -19.45 -0.12 -1.85 16 3 C 0.00 -0.04 12.14 85.69 1.04 1.00 16 4 N -0.36 -6.02 12.04 -58.56 -0.71 -6.72 16 5 O 0.11 1.80 11.04 65.88 0.73 2.53 16 6 C -0.11 -1.82 7.29 24.39 0.18 -1.64 16 7 C 0.60 11.55 7.82 86.69 0.68 12.23 16 8 O -0.54 -13.71 15.11 -3.99 -0.06 -13.77 16 9 N -0.70 -10.14 5.55 -470.05 -2.61 -12.75 16 10 C 0.14 2.31 5.76 85.63 0.49 2.80 16 11 C -0.17 -2.36 9.63 25.64 0.25 -2.11 16 12 C -0.12 -2.13 9.77 25.64 0.25 -1.88 16 13 C 0.07 1.52 5.77 85.56 0.49 2.02 16 14 N -0.68 -20.88 6.11 -522.00 -3.19 -24.07 16 15 C 0.06 2.17 6.17 85.56 0.53 2.70 16 16 C 0.44 20.97 7.82 87.66 0.69 21.66 16 17 O -0.62 -34.73 15.78 -3.08 -0.05 -34.78 16 18 N -0.57 -29.70 5.29 -306.97 -1.62 -31.33 16 19 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 23 Si 0.99 43.16 29.55 68.60 2.03 45.18 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.16 6.73 -2.39 -0.02 1.14 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.23 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.42 4.05 8.29 -92.71 -0.77 3.28 16 32 H 0.08 1.48 5.30 -2.39 -0.01 1.47 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.87 5.29 -2.39 -0.01 1.86 16 38 H 0.35 10.98 8.42 -89.69 -0.76 10.23 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 42 H 0.28 14.06 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -73.75 368.94 0.11 -73.64 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -1.16 Total: 35.76 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.46 Total: 16.01 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -7.84 Total: -124.57 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: 0.62 Total: -46.02 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.75 0.11 -73.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669119940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.254 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds