Wall clock time and date at job start Fri Apr 10 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00284 * 2 1 4 4 C 1.53001 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46957 * 64.99788 * 4 3 2 6 6 C 1.46499 * 120.00018 * 274.99869 * 5 4 3 7 7 C 1.50703 * 109.46965 * 274.99992 * 6 5 4 8 8 H 1.08005 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99911 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99959 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00042 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47279 * 89.99972 * 11 9 7 13 13 H 1.48503 * 109.47090 * 209.99760 * 11 9 7 14 14 H 1.48497 * 109.46965 * 329.99739 * 11 9 7 15 15 S 1.65607 * 119.99889 * 94.99832 * 5 4 3 16 16 O 1.42102 * 106.40280 * 336.46032 * 15 5 4 17 17 O 1.42094 * 106.40106 * 203.53560 * 15 5 4 18 18 N 1.65607 * 107.21597 * 89.99782 * 15 5 4 19 19 C 1.46503 * 119.99857 * 65.00281 * 18 15 5 20 20 H 1.09007 * 110.98591 * 339.19257 * 19 18 15 21 21 C 1.54940 * 111.16257 * 103.41899 * 19 18 15 22 22 O 1.43641 * 105.13614 * 154.37811 * 21 19 18 23 23 C 1.43245 * 109.97106 * 335.57089 * 22 21 19 24 24 H 1.09000 * 109.82609 * 121.22500 * 23 22 21 25 25 C 1.52992 * 109.82960 * 242.19890 * 23 22 21 26 26 C 1.54377 * 107.58529 * 1.71442 * 23 22 21 27 27 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47272 * 300.00423 * 1 2 3 29 29 H 1.09001 * 109.46872 * 59.99826 * 1 2 3 30 30 H 1.09000 * 109.47289 * 59.99748 * 3 2 1 31 31 H 1.09000 * 109.46740 * 300.00123 * 3 2 1 32 32 H 1.08994 * 109.47293 * 304.99634 * 4 3 2 33 33 H 1.09004 * 109.46673 * 184.99528 * 4 3 2 34 34 H 1.08997 * 109.47287 * 34.99961 * 6 5 4 35 35 H 1.09000 * 109.46932 * 155.00300 * 6 5 4 36 36 H 0.96999 * 120.00105 * 180.02562 * 10 9 7 37 37 H 0.96997 * 120.00078 * 244.99685 * 18 15 5 38 38 H 1.08997 * 110.31031 * 35.46278 * 21 19 18 39 39 H 1.08999 * 110.30948 * 273.29167 * 21 19 18 40 40 H 1.09003 * 109.47740 * 58.54816 * 25 23 22 41 41 H 1.09004 * 109.47149 * 178.54519 * 25 23 22 42 42 H 1.09002 * 109.47438 * 298.54397 * 25 23 22 43 43 H 1.09006 * 110.84785 * 139.55089 * 26 23 22 44 44 H 1.09007 * 110.84761 * 263.16031 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0014 -0.8956 -1.3757 7 6 5.3000 -1.4250 -0.8238 8 1 6.0333 -0.7426 -0.4201 9 6 5.5514 -2.7806 -0.8334 10 7 6.6844 -3.2427 -0.3513 11 14 4.2828 -3.9610 -1.5310 12 1 4.5331 -4.1560 -2.9817 13 1 4.3841 -5.2669 -0.8313 14 1 2.9226 -3.3984 -1.3347 15 16 4.4474 1.5119 -2.5245 16 8 3.8197 2.7733 -2.3393 17 8 4.2787 0.7242 -3.6950 18 7 6.0752 1.7721 -2.3665 19 6 7.0102 0.6492 -2.4728 20 1 6.5042 -0.2988 -2.2895 21 6 7.7243 0.6442 -3.8478 22 8 8.9669 -0.0403 -3.6226 23 6 9.3359 0.0570 -2.2420 24 1 9.4321 -0.9408 -1.8138 25 6 10.6612 0.8099 -2.1108 26 6 8.2178 0.8337 -1.5140 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0901 34 1 3.1684 -1.3223 -0.8170 35 1 3.9137 -1.1719 -2.4264 36 1 6.8615 -4.1964 -0.3584 37 1 6.4097 2.6679 -2.2037 38 1 7.9100 1.6652 -4.1814 39 1 7.1249 0.1080 -4.5836 40 1 10.5601 1.8028 -2.5491 41 1 10.9233 0.9032 -1.0568 42 1 11.4446 0.2604 -2.6327 43 1 8.0103 0.3924 -0.5392 44 1 8.4781 1.8877 -1.4163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581188317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:37 Heat of formation + Delta-G solvation = -165.249138 kcal Electronic energy + Delta-G solvation = -27905.945991 eV Core-core repulsion = 23985.589425 eV Total energy + Delta-G solvation = -3920.356566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.22012 -37.86455 -36.75888 -35.54707 -35.32679 -34.49350 -32.57775 -31.70486 -29.84610 -28.89507 -27.22772 -25.82439 -25.69173 -22.66597 -21.73378 -21.26354 -20.73416 -18.98827 -17.63191 -17.11266 -16.75638 -16.20664 -16.11449 -15.86958 -15.73435 -15.14291 -14.71011 -14.53473 -14.19028 -13.82485 -13.45021 -13.24745 -12.88209 -12.54170 -12.43554 -12.33274 -12.29907 -12.10568 -11.89794 -11.83971 -11.58591 -11.55005 -11.38021 -11.24770 -11.16035 -10.93569 -10.75456 -10.67460 -10.40179 -10.25271 -10.16169 -9.56811 -9.41007 -9.22099 -8.95127 -8.63348 -8.13172 -6.18603 -4.18119 1.16138 3.28499 3.35017 3.39553 3.42913 4.01068 4.05461 4.28005 4.37218 4.87843 4.93718 5.11358 5.17457 5.26052 5.32536 5.38651 5.45028 5.53860 5.56242 5.59793 5.60203 5.64706 5.69316 5.79751 5.82273 5.91382 5.99807 6.16467 6.20657 6.30693 6.34552 6.41063 6.54195 6.79628 7.02231 7.15275 7.27639 7.38464 7.45847 7.48287 7.59477 8.37800 8.81505 9.43283 10.92192 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.006445 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.345804 B = 4343.715242 C = 5847.946168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.043 3.957 4 C 0.136 3.864 5 N -0.979 5.979 6 C 0.210 3.790 7 C -0.550 4.550 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.887 5.887 11 Si 0.865 3.135 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.259 1.259 15 S 2.784 3.216 16 O -1.000 7.000 17 O -0.978 6.978 18 N -1.115 6.115 19 C 0.107 3.893 20 H 0.154 0.846 21 C 0.038 3.962 22 O -0.377 6.377 23 C 0.076 3.924 24 H 0.091 0.909 25 C -0.158 4.158 26 C -0.148 4.148 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.266 0.734 37 H 0.406 0.594 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 9.702 0.819 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.036 4.036 4 C 0.009 3.991 5 N -0.820 5.820 6 C 0.087 3.913 7 C -0.588 4.588 8 H 0.103 0.897 9 C -0.122 4.122 10 N -0.524 5.524 11 Si 0.692 3.308 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.184 1.184 15 S 2.792 3.208 16 O -0.984 6.984 17 O -0.961 6.961 18 N -0.872 5.872 19 C 0.000 4.000 20 H 0.171 0.829 21 C -0.040 4.040 22 O -0.296 6.296 23 C 0.019 3.981 24 H 0.108 0.892 25 C -0.216 4.216 26 C -0.188 4.188 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.115 9.382 -0.047 9.618 hybrid contribution -0.454 -0.078 0.303 0.552 sum -2.569 9.304 0.256 9.656 Atomic orbital electron populations 1.22713 0.82240 1.02405 0.99340 1.88054 1.18575 1.27378 1.95215 1.23130 0.95370 0.85015 1.00096 1.21104 0.91200 0.98031 0.88742 1.57399 1.78804 1.18291 1.27483 1.19722 0.99059 0.74387 0.98165 1.21500 1.02104 0.93198 1.42041 0.89661 1.24801 0.95069 0.98096 0.94277 1.69867 1.23336 1.14282 1.44953 0.86992 0.83211 0.80789 0.79844 1.19804 1.21200 1.18374 1.01821 0.72663 0.72375 0.73974 1.93549 1.74482 1.43207 1.87199 1.93580 1.85257 1.70954 1.46311 1.55901 1.26054 1.15520 1.89722 1.23067 0.91373 0.92011 0.93560 0.82890 1.23793 0.85138 0.96780 0.98321 1.88410 1.39090 1.76085 1.26034 1.22671 0.93522 0.99892 0.82063 0.89156 1.22132 0.97497 1.00301 1.01668 1.23336 0.94177 1.00345 1.00895 0.89943 0.94571 0.94515 0.92895 0.93173 0.88791 0.89925 0.92623 0.94313 0.92446 0.76200 0.92857 0.89129 0.92769 0.91696 0.92261 0.88627 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.33 9.02 -35.23 -0.32 -6.64 16 3 C 0.04 0.64 6.28 37.16 0.23 0.88 16 4 C 0.14 2.19 5.79 -4.04 -0.02 2.17 16 5 N -0.98 -18.74 2.81 -115.66 -0.33 -19.07 16 6 C 0.21 4.73 4.23 -5.19 -0.02 4.71 16 7 C -0.55 -13.53 7.50 -34.44 -0.26 -13.79 16 8 H 0.09 2.15 6.79 -52.48 -0.36 1.79 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -24.40 13.96 55.43 0.77 -23.63 16 11 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 15 S 2.78 51.82 6.02 -107.50 -0.65 51.17 16 16 O -1.00 -18.84 17.11 -57.17 -0.98 -19.81 16 17 O -0.98 -21.35 16.45 -57.17 -0.94 -22.29 16 18 N -1.11 -17.67 5.68 -2.98 -0.02 -17.69 16 19 C 0.11 1.90 3.25 -65.69 -0.21 1.69 16 20 H 0.15 3.27 4.63 -51.93 -0.24 3.03 16 21 C 0.04 0.66 7.48 38.18 0.29 0.95 16 22 O -0.38 -6.88 11.02 -35.23 -0.39 -7.27 16 23 C 0.08 1.24 4.16 -26.01 -0.11 1.14 16 24 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 25 C -0.16 -2.05 9.44 37.15 0.35 -1.70 16 26 C -0.15 -2.33 6.23 -24.79 -0.15 -2.48 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 33 H 0.08 1.12 7.61 -51.93 -0.40 0.73 16 34 H 0.06 1.29 5.66 -51.93 -0.29 1.00 16 35 H 0.04 0.93 6.34 -51.93 -0.33 0.60 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.41 5.17 8.82 -34.48 -0.30 4.87 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 1.62 7.70 -51.93 -0.40 1.22 16 44 H 0.07 0.92 7.76 -51.93 -0.40 0.51 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -30.72 362.41 -7.90 -38.62 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.96 Total: 8.22 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 1.11 Total: -2.90 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.43 Total: -60.38 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -2.62 Total: -56.02 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.65 Total: 51.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.72 -7.90 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581188317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.625 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds