Wall clock time and date at job start Fri Apr 10 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00284 * 2 1 4 4 C 1.53001 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46957 * 64.99788 * 4 3 2 6 6 C 1.46499 * 120.00018 * 274.99869 * 5 4 3 7 7 C 1.50703 * 109.46965 * 274.99992 * 6 5 4 8 8 H 1.08005 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99911 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99959 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00042 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47279 * 89.99972 * 11 9 7 13 13 H 1.48503 * 109.47090 * 209.99760 * 11 9 7 14 14 H 1.48497 * 109.46965 * 329.99739 * 11 9 7 15 15 S 1.65607 * 119.99889 * 94.99832 * 5 4 3 16 16 O 1.42102 * 106.40280 * 336.46032 * 15 5 4 17 17 O 1.42094 * 106.40106 * 203.53560 * 15 5 4 18 18 N 1.65607 * 107.21597 * 89.99782 * 15 5 4 19 19 C 1.46503 * 119.99857 * 65.00281 * 18 15 5 20 20 H 1.09007 * 110.98591 * 339.19257 * 19 18 15 21 21 C 1.54940 * 111.16257 * 103.41899 * 19 18 15 22 22 O 1.43641 * 105.13614 * 154.37811 * 21 19 18 23 23 C 1.43245 * 109.97106 * 335.57089 * 22 21 19 24 24 H 1.09000 * 109.82609 * 121.22500 * 23 22 21 25 25 C 1.52992 * 109.82960 * 242.19890 * 23 22 21 26 26 C 1.54377 * 107.58529 * 1.71442 * 23 22 21 27 27 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47272 * 300.00423 * 1 2 3 29 29 H 1.09001 * 109.46872 * 59.99826 * 1 2 3 30 30 H 1.09000 * 109.47289 * 59.99748 * 3 2 1 31 31 H 1.09000 * 109.46740 * 300.00123 * 3 2 1 32 32 H 1.08994 * 109.47293 * 304.99634 * 4 3 2 33 33 H 1.09004 * 109.46673 * 184.99528 * 4 3 2 34 34 H 1.08997 * 109.47287 * 34.99961 * 6 5 4 35 35 H 1.09000 * 109.46932 * 155.00300 * 6 5 4 36 36 H 0.96999 * 120.00105 * 180.02562 * 10 9 7 37 37 H 0.96997 * 120.00078 * 244.99685 * 18 15 5 38 38 H 1.08997 * 110.31031 * 35.46278 * 21 19 18 39 39 H 1.08999 * 110.30948 * 273.29167 * 21 19 18 40 40 H 1.09003 * 109.47740 * 58.54816 * 25 23 22 41 41 H 1.09004 * 109.47149 * 178.54519 * 25 23 22 42 42 H 1.09002 * 109.47438 * 298.54397 * 25 23 22 43 43 H 1.09006 * 110.84785 * 139.55089 * 26 23 22 44 44 H 1.09007 * 110.84761 * 263.16031 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0014 -0.8956 -1.3757 7 6 5.3000 -1.4250 -0.8238 8 1 6.0333 -0.7426 -0.4201 9 6 5.5514 -2.7806 -0.8334 10 7 6.6844 -3.2427 -0.3513 11 14 4.2828 -3.9610 -1.5310 12 1 4.5331 -4.1560 -2.9817 13 1 4.3841 -5.2669 -0.8313 14 1 2.9226 -3.3984 -1.3347 15 16 4.4474 1.5119 -2.5245 16 8 3.8197 2.7733 -2.3393 17 8 4.2787 0.7242 -3.6950 18 7 6.0752 1.7721 -2.3665 19 6 7.0102 0.6492 -2.4728 20 1 6.5042 -0.2988 -2.2895 21 6 7.7243 0.6442 -3.8478 22 8 8.9669 -0.0403 -3.6226 23 6 9.3359 0.0570 -2.2420 24 1 9.4321 -0.9408 -1.8138 25 6 10.6612 0.8099 -2.1108 26 6 8.2178 0.8337 -1.5140 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0901 34 1 3.1684 -1.3223 -0.8170 35 1 3.9137 -1.1719 -2.4264 36 1 6.8615 -4.1964 -0.3584 37 1 6.4097 2.6679 -2.2037 38 1 7.9100 1.6652 -4.1814 39 1 7.1249 0.1080 -4.5836 40 1 10.5601 1.8028 -2.5491 41 1 10.9233 0.9032 -1.0568 42 1 11.4446 0.2604 -2.6327 43 1 8.0103 0.3924 -0.5392 44 1 8.4781 1.8877 -1.4163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581188317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:36 Heat of formation + Delta-G solvation = -190.038718 kcal Electronic energy + Delta-G solvation = -27907.020948 eV Core-core repulsion = 23985.589425 eV Total energy + Delta-G solvation = -3921.431523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.57924 -39.08973 -38.32303 -37.05036 -36.90997 -35.88800 -34.49749 -32.94451 -31.34507 -30.23058 -28.80360 -26.99259 -26.92413 -24.23379 -23.26937 -22.66695 -22.01930 -20.48929 -19.25210 -18.63058 -18.48139 -17.60287 -17.49568 -17.11360 -17.06345 -16.52212 -16.20532 -15.87346 -15.72472 -15.36554 -14.75766 -14.63744 -14.43965 -14.13677 -13.96551 -13.72938 -13.48997 -13.44027 -13.34629 -13.22753 -13.13622 -13.01957 -12.81313 -12.72667 -12.54046 -12.49357 -12.15816 -12.01132 -11.98127 -11.87859 -11.62843 -11.45883 -10.68249 -10.58959 -10.51963 -10.32318 -9.73105 -8.22036 -6.21401 -0.34109 1.37694 1.42824 1.50711 1.89569 2.39960 2.54786 2.93993 2.97338 3.13157 3.39431 3.57655 3.87998 3.96352 4.03467 4.19855 4.25754 4.31225 4.38708 4.41348 4.49548 4.55716 4.55986 4.60152 4.77319 4.80044 4.81026 4.85138 4.87205 5.01642 5.06191 5.16452 5.21775 5.30978 5.42661 5.47475 5.56088 5.78124 6.07507 6.20592 6.37083 6.38358 6.81187 7.40902 8.90545 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.006445 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.345804 B = 4343.715242 C = 5847.946168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.041 3.959 4 C 0.126 3.874 5 N -0.984 5.984 6 C 0.222 3.778 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.036 3.964 10 N -0.922 5.922 11 Si 0.905 3.095 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.250 1.250 15 S 2.797 3.203 16 O -0.998 6.998 17 O -1.012 7.012 18 N -1.098 6.098 19 C 0.106 3.894 20 H 0.115 0.885 21 C 0.037 3.963 22 O -0.396 6.396 23 C 0.070 3.930 24 H 0.062 0.938 25 C -0.149 4.149 26 C -0.137 4.137 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.264 0.736 37 H 0.424 0.576 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 11.892 1.311 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C -0.037 4.037 4 C 0.000 4.000 5 N -0.823 5.823 6 C 0.097 3.903 7 C -0.570 4.570 8 H 0.093 0.907 9 C -0.165 4.165 10 N -0.562 5.562 11 Si 0.731 3.269 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.174 1.174 15 S 2.805 3.195 16 O -0.982 6.982 17 O -0.995 6.995 18 N -0.859 5.859 19 C -0.002 4.002 20 H 0.132 0.868 21 C -0.041 4.041 22 O -0.315 6.315 23 C 0.012 3.988 24 H 0.080 0.920 25 C -0.206 4.206 26 C -0.176 4.176 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.260 0.740 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.433 11.610 0.460 11.871 hybrid contribution -0.373 -0.686 0.159 0.797 sum -2.806 10.924 0.619 11.295 Atomic orbital electron populations 1.22900 0.80365 1.03251 1.00752 1.87993 1.20807 1.28558 1.95502 1.23189 0.94340 0.84746 1.01452 1.21417 0.92527 0.99008 0.87000 1.57326 1.79356 1.16781 1.28865 1.19366 0.97545 0.76546 0.96806 1.21674 1.02444 0.92751 1.40086 0.90691 1.25372 0.96300 0.99666 0.95145 1.69958 1.24802 1.14330 1.47080 0.86346 0.82153 0.79568 0.78875 1.20388 1.20938 1.17357 1.01301 0.73046 0.71897 0.73269 1.93546 1.74825 1.42730 1.87097 1.93540 1.85986 1.71874 1.48135 1.55502 1.24783 1.16154 1.89464 1.22798 0.91794 0.90858 0.94787 0.86766 1.23827 0.84712 0.97989 0.97583 1.88385 1.39280 1.76765 1.27072 1.22762 0.95658 0.99251 0.81141 0.92029 1.22062 0.95143 1.00394 1.03051 1.23274 0.92852 1.02236 0.99253 0.89524 0.92247 0.93946 0.89523 0.93663 0.89498 0.87103 0.93046 0.95838 0.92683 0.73969 0.89909 0.90688 0.91235 0.89945 0.92139 0.90293 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -13.28 9.02 -148.98 -1.34 -14.62 16 3 C 0.04 1.14 6.28 71.98 0.45 1.60 16 4 C 0.13 3.84 5.79 86.38 0.50 4.34 16 5 N -0.98 -36.88 2.81 -519.85 -1.46 -38.34 16 6 C 0.22 10.05 4.23 85.63 0.36 10.41 16 7 C -0.53 -26.54 7.50 25.60 0.19 -26.35 16 8 H 0.08 3.85 6.79 -2.91 -0.02 3.83 16 9 C 0.04 1.91 5.47 84.65 0.46 2.37 16 10 N -0.92 -52.10 13.96 21.45 0.30 -51.80 16 11 Si 0.90 42.68 27.47 68.60 1.88 44.56 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 15 S 2.80 100.96 6.02 -56.49 -0.34 100.62 16 16 O -1.00 -35.33 17.11 -128.00 -2.19 -37.52 16 17 O -1.01 -44.15 16.45 -128.00 -2.11 -46.26 16 18 N -1.10 -32.91 5.68 -163.36 -0.93 -33.84 16 19 C 0.11 3.69 3.25 46.44 0.15 3.84 16 20 H 0.11 5.00 4.63 -2.38 -0.01 4.99 16 21 C 0.04 1.26 7.48 72.65 0.54 1.81 16 22 O -0.40 -14.30 11.02 -148.98 -1.64 -15.94 16 23 C 0.07 2.23 4.16 31.06 0.13 2.36 16 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 25 C -0.15 -3.52 9.44 71.98 0.68 -2.84 16 26 C -0.14 -4.13 6.23 31.85 0.20 -3.93 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 2.77 8.11 -2.39 -0.02 2.75 16 33 H 0.11 2.70 7.61 -2.38 -0.02 2.68 16 34 H 0.05 2.39 5.66 -2.39 -0.01 2.37 16 35 H 0.02 1.14 6.34 -2.39 -0.02 1.13 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.42 9.51 8.82 -96.74 -0.85 8.65 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 2.66 7.70 -2.38 -0.02 2.64 16 44 H 0.11 2.41 7.76 -2.38 -0.02 2.39 16 Total: -1.00 -66.83 362.41 -2.82 -69.65 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.09 Total: 28.07 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.92 Total: -4.58 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -2.09 Total: -123.98 kcal Atomic # 8 Polarization: -107.06 SS G_CDS: -7.28 Total: -114.34 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.56 kcal Atomic # 16 Polarization: 100.96 SS G_CDS: -0.34 Total: 100.62 kcal Total: -66.83 -2.82 -69.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581188317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.390 kcal (2) G-P(sol) polarization free energy of solvation -66.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds