Wall clock time and date at job start Fri Apr 10 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99933 * 2 1 4 4 C 1.53003 * 109.46995 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47351 * 65.00096 * 4 3 2 6 6 C 1.46497 * 120.00189 * 84.99965 * 5 4 3 7 7 C 1.50694 * 109.47115 * 275.00116 * 6 5 4 8 8 H 1.08000 * 120.00563 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 S 1.65605 * 119.99847 * 265.00016 * 5 4 3 16 16 O 1.42098 * 106.40230 * 23.54106 * 15 5 4 17 17 O 1.42103 * 106.39983 * 156.45849 * 15 5 4 18 18 N 1.65601 * 107.21978 * 270.00091 * 15 5 4 19 19 C 1.47416 * 125.65026 * 90.02353 * 18 15 5 20 20 C 1.54909 * 104.83536 * 204.09578 * 19 18 15 21 21 C 1.55163 * 101.57933 * 322.98835 * 20 19 18 22 22 H 1.08999 * 110.72066 * 153.86623 * 21 20 19 23 23 O 1.42900 * 110.72034 * 276.96310 * 21 20 19 24 24 C 1.47018 * 125.64770 * 269.71816 * 18 15 5 25 25 H 1.09002 * 109.88448 * 59.55950 * 24 18 15 26 26 C 1.53008 * 109.88252 * 298.39578 * 24 18 15 27 27 H 1.09001 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46969 * 299.99751 * 1 2 3 29 29 H 1.09002 * 109.47228 * 59.99997 * 1 2 3 30 30 H 1.08999 * 109.47322 * 60.00214 * 3 2 1 31 31 H 1.09005 * 109.47333 * 300.00098 * 3 2 1 32 32 H 1.09003 * 109.47031 * 304.99515 * 4 3 2 33 33 H 1.09001 * 109.46901 * 185.00094 * 4 3 2 34 34 H 1.09007 * 109.47078 * 154.99755 * 6 5 4 35 35 H 1.09003 * 109.46733 * 35.00478 * 6 5 4 36 36 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.36824 * 322.93102 * 19 18 15 38 38 H 1.09007 * 110.36774 * 85.14070 * 19 18 15 39 39 H 1.08996 * 111.00703 * 81.06354 * 20 19 18 40 40 H 1.08997 * 111.00259 * 204.88129 * 20 19 18 41 41 H 0.96698 * 114.00164 * 298.54577 * 23 21 20 42 42 H 1.08992 * 109.47246 * 59.99959 * 26 24 18 43 43 H 1.09002 * 109.46745 * 180.02562 * 26 24 18 44 44 H 1.08998 * 109.46378 * 299.99567 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1809 1.3890 -2.4461 7 6 2.8685 1.5681 -3.1646 8 1 1.9712 1.1129 -2.7720 9 6 2.8132 2.3123 -4.3241 10 7 3.9059 2.8662 -4.8026 11 14 1.1865 2.5337 -5.2152 12 1 1.0105 1.4394 -6.2036 13 1 0.0743 2.4961 -4.2318 14 1 1.1815 3.8416 -5.9185 15 16 4.2414 -1.0688 -1.3190 16 8 3.4686 -1.6438 -0.2743 17 8 4.1044 -1.4425 -2.6832 18 7 5.8286 -1.3238 -0.9214 19 6 6.3473 -1.5531 0.4394 20 6 7.8330 -1.1194 0.3758 21 6 8.2369 -1.5985 -1.0437 22 1 9.0614 -1.0008 -1.4324 23 8 8.5826 -2.9850 -1.0299 24 6 6.9530 -1.3654 -1.8677 25 1 7.0240 -0.4173 -2.4009 26 6 6.7542 -2.5113 -2.8620 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.8939 0.8982 -3.1086 35 1 4.5700 2.3637 -2.1516 36 1 3.8671 3.3894 -5.6184 37 1 5.8043 -0.9420 1.1603 38 1 6.2692 -2.6081 0.7024 39 1 7.9283 -0.0372 0.4647 40 1 8.4209 -1.6254 1.1415 41 1 9.3378 -3.1965 -0.4642 42 1 5.8263 -2.3576 -3.4126 43 1 7.5913 -2.5361 -3.5597 44 1 6.7039 -3.4565 -2.3215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590764006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:47 Heat of formation + Delta-G solvation = -157.246672 kcal Electronic energy + Delta-G solvation = -28113.877045 eV Core-core repulsion = 24193.867492 eV Total energy + Delta-G solvation = -3920.009553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.18582 -37.54833 -36.38085 -35.36676 -35.29224 -34.90170 -32.48864 -31.16265 -29.69220 -29.30240 -26.72814 -25.64784 -25.36054 -22.66357 -22.02734 -21.56746 -20.82872 -18.29680 -17.47156 -17.00154 -16.85894 -16.34842 -15.96580 -15.71915 -15.01762 -14.94998 -14.47075 -14.37908 -14.22105 -13.71179 -13.47613 -13.18128 -12.75985 -12.68304 -12.52714 -12.29315 -12.20333 -11.94581 -11.62879 -11.54826 -11.40456 -11.25103 -11.10720 -10.98917 -10.92772 -10.84561 -10.75982 -10.56064 -10.42612 -10.23854 -10.03571 -9.95854 -9.63829 -8.99629 -8.74027 -8.41063 -8.02568 -6.04744 -4.07075 1.32179 3.32147 3.38594 3.41020 3.63706 4.07361 4.25666 4.38349 4.45347 4.46816 4.68458 4.89408 5.20624 5.29298 5.30958 5.45974 5.49863 5.58776 5.59805 5.63785 5.68506 5.73504 5.78627 5.80517 5.88329 5.99761 6.04847 6.05814 6.11811 6.32877 6.35976 6.56686 6.63780 6.77487 6.85402 7.24609 7.44712 7.57690 7.64223 7.79740 7.94224 8.24422 8.95707 9.57354 11.03973 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.005656 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.186081 B = 4949.436930 C = 6108.359775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.033 3.967 4 C 0.143 3.857 5 N -0.989 5.989 6 C 0.258 3.742 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.275 1.275 14 H -0.287 1.287 15 S 2.791 3.209 16 O -0.969 6.969 17 O -0.960 6.960 18 N -1.021 6.021 19 C 0.130 3.870 20 C -0.163 4.163 21 C 0.098 3.902 22 H 0.074 0.926 23 O -0.552 6.552 24 C 0.159 3.841 25 H 0.085 0.915 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.373 0.627 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 -4.826 12.187 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.045 4.045 4 C 0.016 3.984 5 N -0.830 5.830 6 C 0.136 3.864 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.200 1.200 14 H -0.212 1.212 15 S 2.801 3.199 16 O -0.953 6.953 17 O -0.944 6.944 18 N -0.859 5.859 19 C 0.004 3.996 20 C -0.202 4.202 21 C 0.037 3.963 22 H 0.092 0.908 23 O -0.357 6.357 24 C 0.052 3.948 25 H 0.103 0.897 26 C -0.230 4.230 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.220 0.780 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.926 -5.558 11.368 14.425 hybrid contribution -0.357 0.928 -0.077 0.997 sum 6.569 -4.630 11.290 13.859 Atomic orbital electron populations 1.22655 0.82556 1.01992 0.99245 1.88091 1.18298 1.27091 1.95236 1.23188 0.94970 0.85563 1.00813 1.21011 0.92538 0.99170 0.85708 1.57838 1.80270 1.27258 1.17648 1.19036 0.97211 0.90325 0.79872 1.21529 0.94901 1.31403 1.08276 0.91923 1.24921 0.96579 0.95593 0.96912 1.69915 1.27225 1.34344 1.22094 0.86578 0.83904 0.77392 0.80023 1.20436 1.19974 1.21248 1.01831 0.71423 0.73295 0.73374 1.93584 1.66405 1.76511 1.58778 1.93569 1.84564 1.81793 1.34458 1.59641 1.25226 1.87472 1.13590 1.21765 0.93468 1.00686 0.83671 1.23496 0.96871 1.02278 0.97589 1.22797 0.96267 0.82591 0.94621 0.90840 1.86605 1.53797 1.24479 1.70852 1.21265 0.84121 0.99668 0.89720 0.89703 1.22222 1.03819 0.98263 0.98726 0.90316 0.94976 0.94334 0.94022 0.90549 0.91410 0.89658 0.94590 0.94977 0.92799 0.91196 0.91611 0.89741 0.90042 0.78012 0.89426 0.92040 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.37 -7.47 8.76 -54.45 -0.48 -7.95 16 3 C 0.03 0.60 6.03 37.16 0.22 0.83 16 4 C 0.14 2.51 5.84 -4.04 -0.02 2.48 16 5 N -0.99 -20.76 2.80 -115.67 -0.32 -21.08 16 6 C 0.26 6.34 5.12 -5.20 -0.03 6.31 16 7 C -0.52 -14.37 8.38 -34.44 -0.29 -14.65 16 8 H 0.06 1.75 6.77 -52.49 -0.36 1.40 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 15 S 2.79 59.18 6.18 -107.50 -0.66 58.52 16 16 O -0.97 -21.67 14.87 -65.29 -0.97 -22.64 16 17 O -0.96 -23.86 14.25 -57.17 -0.81 -24.68 16 18 N -1.02 -17.03 3.46 -104.41 -0.36 -17.39 16 19 C 0.13 1.70 6.97 -2.53 -0.02 1.68 16 20 C -0.16 -1.57 6.81 -24.58 -0.17 -1.74 16 21 C 0.10 1.08 4.18 -24.89 -0.10 0.97 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 O -0.55 -5.88 11.74 -35.23 -0.41 -6.29 16 24 C 0.16 2.44 3.65 -66.94 -0.24 2.19 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 C -0.17 -2.85 8.60 37.16 0.32 -2.53 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.56 6.25 -51.93 -0.32 1.23 16 32 H 0.07 1.07 7.61 -51.93 -0.40 0.67 16 33 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 34 H 0.04 0.95 7.61 -51.92 -0.40 0.56 16 35 H 0.03 0.79 8.00 -51.93 -0.42 0.38 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.37 2.15 9.11 45.56 0.42 2.56 16 42 H 0.09 1.72 5.72 -51.93 -0.30 1.42 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.04 7.38 -51.93 -0.38 0.66 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -35.27 362.57 -8.51 -43.78 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.35 Total: 1.75 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 0.69 Total: -1.17 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 0.05 Total: -63.55 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -2.68 Total: -61.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 59.18 SS G_CDS: -0.66 Total: 58.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.27 -8.51 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590764006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.470 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds