Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00001 * 2 1 4 4 C 1.50701 * 109.46993 * 274.45749 * 3 2 1 5 5 H 1.07998 * 120.00053 * 4.70949 * 4 3 2 6 6 C 1.37878 * 120.00211 * 184.70094 * 4 3 2 7 7 N 1.31517 * 119.99861 * 5.34466 * 6 4 3 8 8 Si 1.86798 * 120.00164 * 185.34236 * 6 4 3 9 9 H 1.48500 * 109.47181 * 94.98411 * 8 6 4 10 10 H 1.48503 * 109.47001 * 214.98187 * 8 6 4 11 11 H 1.48494 * 109.47251 * 334.98239 * 8 6 4 12 12 S 1.65606 * 120.00169 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40145 * 159.92972 * 12 2 1 14 14 O 1.42100 * 106.39842 * 27.01064 * 12 2 1 15 15 N 1.65597 * 107.21630 * 273.46874 * 12 2 1 16 16 C 1.46502 * 119.99960 * 64.81549 * 15 12 2 17 17 C 1.52993 * 109.47368 * 163.75174 * 16 15 12 18 18 C 1.52998 * 109.47341 * 184.71199 * 17 16 15 19 19 O 1.42898 * 109.52190 * 60.81588 * 18 17 16 20 20 C 1.53178 * 109.52507 * 180.94105 * 18 17 16 21 21 C 1.53174 * 109.03787 * 176.94965 * 20 18 17 22 22 C 1.53088 * 109.16302 * 303.01827 * 21 20 18 23 23 O 1.42904 * 109.41499 * 57.60973 * 22 21 20 24 24 C 1.42904 * 114.09700 * 298.84145 * 23 22 21 25 25 H 1.08997 * 109.47415 * 270.00069 * 1 2 3 26 26 H 1.09002 * 109.47136 * 29.99902 * 1 2 3 27 27 H 1.08996 * 109.46849 * 150.00179 * 1 2 3 28 28 H 1.09000 * 109.47653 * 34.45917 * 3 2 1 29 29 H 1.09003 * 109.47487 * 154.46031 * 3 2 1 30 30 H 0.97001 * 120.00216 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99977 * 244.80419 * 15 12 2 32 32 H 1.09005 * 109.47531 * 43.74678 * 16 15 12 33 33 H 1.09002 * 109.46783 * 283.75244 * 16 15 12 34 34 H 1.09003 * 109.47317 * 64.71129 * 17 16 15 35 35 H 1.09001 * 109.47076 * 304.71053 * 17 16 15 36 36 H 0.96703 * 114.00404 * 300.12429 * 19 18 17 37 37 H 1.09007 * 109.54585 * 296.81766 * 20 18 17 38 38 H 1.09004 * 109.54487 * 57.08386 * 20 18 17 39 39 H 1.09001 * 109.52489 * 62.92386 * 21 20 18 40 40 H 1.09006 * 109.52094 * 183.11673 * 21 20 18 41 41 H 1.08998 * 109.48384 * 297.62796 * 22 21 20 42 42 H 1.09004 * 109.49338 * 177.59929 * 22 21 20 43 43 H 1.08996 * 109.48077 * 301.17697 * 24 23 22 44 44 H 1.09001 * 109.48787 * 181.14556 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3530 1.7590 -1.4165 5 1 1.8821 1.2239 -2.2279 6 6 3.0963 2.8907 -1.6767 7 7 3.7557 3.4822 -0.7046 8 14 3.1669 3.5837 -3.4099 9 1 2.1449 4.6508 -3.5584 10 1 4.5158 4.1519 -3.6613 11 1 2.8964 2.4996 -4.3880 12 16 2.2931 -1.4342 0.0006 13 8 3.6025 -1.1416 -0.4673 14 8 1.4419 -2.3891 -0.6180 15 7 2.4553 -1.9058 1.5797 16 6 1.2683 -2.2456 2.3683 17 6 1.6911 -3.0185 3.6192 18 6 0.4458 -3.4750 4.3818 19 8 -0.3342 -4.3367 3.5505 20 6 0.8678 -4.2287 5.6468 21 6 -0.3845 -4.6139 6.4402 22 6 -1.1868 -3.3493 6.7579 23 8 -1.5207 -2.6802 5.5401 24 6 -0.3886 -2.2545 4.7790 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6454 2.0071 0.5815 29 1 3.1822 1.1198 0.4431 30 1 4.2790 4.2782 -0.8877 31 1 3.3362 -1.9572 1.9825 32 1 0.5983 -2.8624 1.7692 33 1 0.7538 -1.3310 2.6629 34 1 2.2927 -2.3730 4.2591 35 1 2.2778 -3.8894 3.3271 36 1 -0.6363 -3.9238 2.7298 37 1 1.4149 -5.1297 5.3691 38 1 1.5039 -3.5882 6.2578 39 1 -0.9963 -5.2941 5.8477 40 1 -0.0911 -5.1021 7.3696 41 1 -0.5890 -2.6873 7.3843 42 1 -2.1010 -3.6215 7.2855 43 1 0.2197 -1.5782 5.3795 44 1 -0.7276 -1.7380 3.8809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593662355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = -179.361660 kcal Electronic energy + Delta-G solvation = -26671.357562 eV Core-core repulsion = 22750.389031 eV Total energy + Delta-G solvation = -3920.968531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34458 -37.20381 -36.60558 -35.53995 -35.18407 -35.15522 -33.37760 -32.45755 -31.61475 -28.19331 -27.80836 -25.60603 -25.10439 -24.18275 -22.32774 -21.69528 -20.40599 -19.04521 -17.51509 -17.26702 -16.73316 -16.68816 -16.44057 -16.06779 -15.74373 -15.35088 -15.01147 -14.83324 -14.54484 -14.22923 -13.68010 -13.45643 -13.43098 -13.31170 -12.94973 -12.38626 -12.35454 -12.19176 -12.12707 -11.81015 -11.63350 -11.58912 -11.49783 -11.38413 -11.17957 -11.14917 -11.08663 -10.72156 -10.69297 -10.53398 -10.38835 -10.06007 -9.79585 -9.49657 -9.39323 -8.45942 -8.10389 -6.08619 -4.12232 1.18897 3.29998 3.36954 3.41346 3.45242 3.54210 3.91328 4.08616 4.24795 4.38878 4.39861 4.43273 4.64894 4.79749 4.82157 4.88496 5.00867 5.07243 5.16617 5.22650 5.26439 5.30845 5.40208 5.43118 5.57361 5.59177 5.66686 5.76277 5.78582 5.91739 5.98070 5.99389 6.24986 6.51618 6.86055 7.02762 7.22114 7.38472 7.42680 7.58596 7.89459 8.18169 8.90116 9.52897 11.00089 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.003012 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.736843 B = 9292.447712 C = 9646.743762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.781 3.219 13 O -0.962 6.962 14 O -0.997 6.997 15 N -1.133 6.133 16 C 0.115 3.885 17 C -0.154 4.154 18 C 0.104 3.896 19 O -0.548 6.548 20 C -0.108 4.108 21 C -0.153 4.153 22 C 0.058 3.942 23 O -0.372 6.372 24 C 0.031 3.969 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.379 0.621 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -13.098 16.153 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.839 5.839 3 C 0.134 3.866 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.788 3.212 13 O -0.945 6.945 14 O -0.981 6.981 15 N -0.892 5.892 16 C -0.012 4.012 17 C -0.193 4.193 18 C 0.062 3.938 19 O -0.355 6.355 20 C -0.145 4.145 21 C -0.190 4.190 22 C -0.019 4.019 23 O -0.290 6.290 24 C -0.046 4.046 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.227 0.773 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.553 -13.779 15.765 22.259 hybrid contribution 0.631 1.127 -0.744 1.491 sum -6.922 -12.653 15.020 20.823 Atomic orbital electron populations 1.21389 0.80327 1.03666 1.00037 1.57615 1.14199 1.23348 1.88690 1.19081 0.91210 0.78623 0.97683 1.21506 1.32002 1.10444 0.93201 0.92109 1.24939 0.94668 0.96866 0.97504 1.69927 1.30664 1.20563 1.32111 0.86492 0.77413 0.79166 0.84447 1.20622 1.21050 1.19696 1.01986 0.73435 0.72916 0.72816 1.93650 1.38393 1.84518 1.77968 1.93524 1.69197 1.61250 1.74096 1.56256 1.14033 1.85186 1.33727 1.21250 0.87987 0.99023 0.92941 1.22467 0.98507 1.01565 0.96730 1.21779 0.90011 0.90755 0.91233 1.86542 1.72011 1.41479 1.35469 1.21574 0.97821 1.01045 0.94106 1.22133 0.97367 0.98958 1.00587 1.22611 1.00071 0.92766 0.86425 1.87978 1.30547 1.76109 1.34399 1.23409 0.88995 0.95270 0.96932 0.94434 0.90317 0.91537 0.95100 0.93864 0.92675 0.75426 0.90644 0.91708 0.89946 0.89688 0.77252 0.90504 0.90462 0.90088 0.90992 0.93334 0.88887 0.92008 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.69 59.85 0.64 2.13 16 2 N -1.00 -19.94 3.22 -123.05 -0.40 -20.34 16 3 C 0.26 6.30 5.10 -5.19 -0.03 6.27 16 4 C -0.53 -14.85 9.38 -34.44 -0.32 -15.17 16 5 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 6 C 0.06 1.77 5.45 -17.82 -0.10 1.68 16 7 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 S 2.78 53.48 6.11 -107.50 -0.66 52.83 16 13 O -0.96 -22.83 17.00 -57.17 -0.97 -23.80 16 14 O -1.00 -20.22 16.27 -57.17 -0.93 -21.15 16 15 N -1.13 -15.53 6.05 -10.61 -0.06 -15.59 16 16 C 0.11 1.23 5.57 -4.04 -0.02 1.21 16 17 C -0.15 -1.32 4.64 -26.74 -0.12 -1.45 16 18 C 0.10 0.90 0.76 -90.48 -0.07 0.83 16 19 O -0.55 -5.56 12.36 -42.72 -0.53 -6.09 16 20 C -0.11 -0.83 5.04 -26.55 -0.13 -0.96 16 21 C -0.15 -1.14 5.98 -26.60 -0.16 -1.30 16 22 C 0.06 0.45 6.84 37.20 0.25 0.70 16 23 O -0.37 -3.86 10.70 -42.72 -0.46 -4.31 16 24 C 0.03 0.27 5.34 37.20 0.20 0.47 16 25 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 27 H 0.07 1.01 7.05 -51.93 -0.37 0.65 16 28 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.41 4.96 8.66 -34.47 -0.30 4.66 16 32 H 0.08 0.79 6.16 -51.93 -0.32 0.47 16 33 H 0.06 0.63 6.69 -51.93 -0.35 0.28 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.38 3.10 7.27 45.56 0.33 3.43 16 37 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.74 7.83 -51.93 -0.41 0.33 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.83 6.67 -51.93 -0.35 0.48 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -35.47 364.04 -9.00 -44.46 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.33 Total: 2.63 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 0.14 Total: -5.58 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.28 Total: -61.19 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -2.89 Total: -55.36 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 53.48 SS G_CDS: -0.66 Total: 52.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.47 -9.00 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593662355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.897 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds